Gene

KWMTBOMO05882

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr10(+):13361746-13362389      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.023 Nuclear   Reliability : 2.362

CDS

ATGTATCTAGCCTATCGTCATGTATGGTTGCGAAACGTGGACCCTGAAAGAGGACACTACAAGACGCCTACAGGCATTCGAGATGTGGTGCTACCGTCGCATGTTACGCAGTTTAGTTGGACGCAGAGGGTCAGGAACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGTTGCCTGCTATCAAAAAGCGCAAGATAGAGTATCTCGGCCACGTGCTCAGGAACGATCGATACATGCTGCTGCAGCTGATAATTATGGGCAAAGTGGACGGAAAGAGACGTGCTGGGCGAAGAAAAAAGTCATGGCTCCGGAATATCCGGGAGTGGACCAGTATTGCCTCCGTCGAACAGCTGTTCCGGCTGGCTGCTGACAGAAAGGAATACAGAAAACTAACGGCCAACCTTCAGGATTGA

Protein

MYLAYRHVWLRNVDPERGHYKTPTGIRDVVLPSHVTQFSWTQRVRNETVLQRVHMSRKMLPAIKKRKIEYLGHVLRNDRYMLLQLIIMGKVDGKRRAGRRKKSWLRNIREWTSIASVEQLFRLAADRKEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A151IIH7   A0A146L0Z1   A0A2H1V1U0   A0A0K8T3U8   + More
A0A2S2QJK3   A0A0A9XCF5   A0A0J7KRQ5   A0A0J7KZE8   A0A2A4JBK9   A0A2S2QAF2   A0A2S2PW26   A0A2W1BSK1   A0A0J7KK86   W4Y921   X1D4L4   A0A3S1AZH6   A0A3S0ZE77   J9LIJ7   A0A2S2P9Y7   A0A2S2P7C6   A0A3S1AY56   A0A067QXS5   A0A0B7BUS3   A0A0B7BSZ9   A0A0B7BT80   A0A0B7BUR9   A0A3S1A2L0   A0A3S1CD12   A0A067RNC1   A0A067QUH9   A0A1W7RAL1   A0A3S0ZU31   A0A3S1HJZ0   A0A2J7PZP5   A0A067QJX4  

Pubmed

20470440    26823975    25401762    28756777    24624126    24845553    + More

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ977522    KYN02133.1    + More
GDHC01017214    JAQ01415.1    ODYU01000306    SOQ34818.1    GBRD01005612    JAG60209.1    GGMS01008711    MBY77914.1    GBHO01028834    JAG14770.1    LBMM01003995    KMQ92919.1    LBMM01001656    KMQ95932.1    NWSH01001998    PCG69477.1    GGMS01004979    MBY74182.1    GGMS01000367    MBY69570.1    KZ149912    PZC78062.1    LBMM01006413    KMQ90631.1    AAGJ04161766    BART01031562    GAH15691.1    RQTK01000685    RUS76136.1    RQTK01000625    RUS76894.1    ABLF02012409    ABLF02012412    GGMR01013640    MBY26259.1    GGMR01012724    MBY25343.1    RQTK01001448    RUS70261.1    KK853131    KDR10935.1    HACG01049256    CEK96121.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    RQTK01000357    RUS81065.1    RQTK01000058    RUS89376.1    KK852404    KDR24543.1    KK852941    KDR13536.1    GFAH01000222    JAV48167.1    RQTK01000752    RUS75316.1    RQTK01000360    RUS81011.1    NEVH01020333    PNF21801.1    KK853249    KDR09341.1   

Proteomes

UP000218220    UP000078542    UP000036403    UP000007110    UP000271974    UP000007819    + More
UP000027135    UP000235965   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036640   ABC1_TM_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF90123   SSF90123       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A151IIH7   A0A146L0Z1   A0A2H1V1U0   A0A0K8T3U8   + More
A0A2S2QJK3   A0A0A9XCF5   A0A0J7KRQ5   A0A0J7KZE8   A0A2A4JBK9   A0A2S2QAF2   A0A2S2PW26   A0A2W1BSK1   A0A0J7KK86   W4Y921   X1D4L4   A0A3S1AZH6   A0A3S0ZE77   J9LIJ7   A0A2S2P9Y7   A0A2S2P7C6   A0A3S1AY56   A0A067QXS5   A0A0B7BUS3   A0A0B7BSZ9   A0A0B7BT80   A0A0B7BUR9   A0A3S1A2L0   A0A3S1CD12   A0A067RNC1   A0A067QUH9   A0A1W7RAL1   A0A3S0ZU31   A0A3S1HJZ0   A0A2J7PZP5   A0A067QJX4  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519  

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0061

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.18445

outside

1  -  139

 

 

Pi

315.567165

Theta

198.608789

Tajima's D

1.853572

CLR

0

CSRT

0.854057297135143

Interpretation

Uncertain