Gene

KWMTBOMO05872

Pre Gene Modal

BGIBMGA002942

Annotation

PREDICTED:_15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(-):13032291-13038260      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.333

CDS

ATGTACGATTTAAAAGATAAGGTGGTAATTATTACTGGTGGTGCTAATGGGATAGGAGAGAGCTTTGTCCAGAATTTACTCAAAGAAGATATTAAGTTTATTGCAATTTTGGACACTGATGTCGAAGCGGGTGAAATGCTTCAGGATAAAATGATGACTGAATATGGTAATTCGAAAGTAAAATTCATACAGTGTGACGTCACTGTCGATGAAGAACTTTTTGGGGCTTTTGATGATGTTGTCAAAGAAATCGGATATATTGATCTAGTTATTAATAATGCTGGGATAGCCAATGAATCAGATCCAAAAGCAATAAGAAAAGAAGTTGAAGTTAATTACATTGCTCTTGTAAATGGAACATTGAAATCCTTAGAACTTATGCGCAAGGACAAAGGCGGTAACGGAGGAACGATTGTGAATATTTCATCTATTGGTTGTATGTGTCAGCATGCACCAGCTTTGTTTGTTTACATGGGGACAAAGAGTGCTGTGTTGCAATTTAGTAATTGCATTGGGAGGGAAGAATATTATAGTAAAACAGGAGTGCGCATTCTAACTGTGTGCTTTGGAATCACAAAAACTGGCATTTACAACAACCTCAAAAGTTTTGATGAAAACATTAACAAAGATATGCAACAGATTATAGATTTATATCCTATGCAGTCAAAAGAGTCAGCAGCCAAAGGTGCGATAGAAGCAATCAAGAAAGGTATTATGAGTGAAGTAAACGACAAAATTGTAATTGTTACGGGCGGTGCTAATGGCATCGGTGCGTTTAGTGTTGAAGTATTTATTGAAAATCAGGCCAAGCATGTTGCCATCCTGGACATCGACACAATTTCCGGATTCAAATTGGAAAAACATTTAAATACTACATACGGAGATGGAAAAGTAAAATTTTACAAATGCGATGTCTCTATTGATGATCAATTGTTTGGTGCGTTTAATAAAGTTCTAGACAGCCATGGTTATATTGATGTAGTTGTGAATAACGCTGCTGTTTCGTTGGAAAATTCTCTTGAAGGTATTCGAAGACTAGTTGACATAAATGTTACCGCCTTGGTCATGAGCACATTGAAAGCTATCGAAATAATGCGTGTAGATAAAACAGGGAAAGGCGGTACGATTATAAACATCTCGTCTATAGCAGCGCTCAAACAATTTTGTCCCAGTGTCTTCGTTTACTGCGGCACGAAAAGCGCAGTCTTACAGTTCAGTAATTGTATTGGAAAACAAGAATATTTTTCTAAAACAGGCGTAAGAGTAATAACGGTGTGCTACGGTCCAACAGACACTGACTTAGTTCCGCTGATGATCAATATCGATGACAGCATCAATCCTGAAATTCGCTCGAACATTGATGCCCAGAAATTACAAACGGCGGAATCAGCGGCACGTGGTCTCCTGGAAGCCTACAAGAATGGTGCGAGCGGTAGTACTTGGCTTGTATTTGACAGCAAAGTTACAGAAATCACATCTAATATAGACAGAGCCTACGATATAATGTCGGAAAATTTTACTAAGTAG

Protein

MYDLKDKVVIITGGANGIGESFVQNLLKEDIKFIAILDTDVEAGEMLQDKMMTEYGNSKVKFIQCDVTVDEELFGAFDDVVKEIGYIDLVINNAGIANESDPKAIRKEVEVNYIALVNGTLKSLELMRKDKGGNGGTIVNISSIGCMCQHAPALFVYMGTKSAVLQFSNCIGREEYYSKTGVRILTVCFGITKTGIYNNLKSFDENINKDMQQIIDLYPMQSKESAAKGAIEAIKKGIMSEVNDKIVIVTGGANGIGAFSVEVFIENQAKHVAILDIDTISGFKLEKHLNTTYGDGKVKFYKCDVSIDDQLFGAFNKVLDSHGYIDVVVNNAAVSLENSLEGIRRLVDINVTALVMSTLKAIEIMRVDKTGKGGTIINISSIAALKQFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLVPLMINIDDSINPEIRSNIDAQKLQTAESAARGLLEAYKNGASGSTWLVFDSKVTEITSNIDRAYDIMSENFTK

Similarity

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Uniprot

A0A0L7KWX5   A0A2H1WQ20   A0A310SBI2   A0A2A4JP62   A0A195BP85   A0A182H9W1   + More
A0A195CI97   A0A2A3ECA0   D6WGE4   A0A158NP60   A0A2H1VSR5   A0A154PC54   A0A195FBJ6   N6UBZ4   A0A1B0DGV4   A0A0L0BQ91   A0A2P8ZLP3   A0A1B0C9Z0   A0A310SGK5  

Pubmed

26227816    26483478    18362917    19820115    21347285    23537049    + More
26108605    29403074   

EMBL

JTDY01004799    KOB67737.1    ODYU01010208    SOQ55170.1    KQ771134    OAD52543.1    + More
NWSH01000856    PCG73837.1    KQ976424    KYM88327.1    JXUM01030715    JXUM01030716    JXUM01030717    KQ560893    KXJ80459.1    KQ977720    KYN00433.1    KZ288303    PBC28806.1    KQ971329    EFA01118.2    ADTU01001531    ODYU01003911    SOQ43254.1    KQ434870    KZC09509.1    KQ981685    KYN37995.1    APGK01029527    APGK01029528    APGK01029529    KB740735    ENN79175.1    AJVK01060401    JRES01001539    KNC22176.1    PYGN01000021    PSN57413.1    AJWK01003050    AJWK01003051    AJWK01003052    AJWK01003053    OAD52542.1   

Proteomes

UP000037510    UP000218220    UP000078540    UP000069940    UP000249989    UP000078542    + More
UP000242457    UP000007266    UP000005205    UP000076502    UP000078541    UP000019118    UP000092462    UP000037069    UP000245037    UP000092461   

Pfam

PF00106   adh_short        + More
PF10545   MADF_DNA_bdg

Interpro

IPR002347   SDR_fam        + More
IPR006578   MADF-dom       
IPR036291   NAD(P)-bd_dom_sf       
IPR020904   Sc_DH/Rdtase_CS       
IPR002426   ADH_Ceratitis-type       

SUPFAM

SSF51735   SSF51735       

ProteinModelPortal

A0A0L7KWX5   A0A2H1WQ20   A0A310SBI2   A0A2A4JP62   A0A195BP85   A0A182H9W1   + More
A0A195CI97   A0A2A3ECA0   D6WGE4   A0A158NP60   A0A2H1VSR5   A0A154PC54   A0A195FBJ6   N6UBZ4   A0A1B0DGV4   A0A0L0BQ91   A0A2P8ZLP3   A0A1B0C9Z0   A0A310SGK5  

PDB

2GDZ     E-value=1.58135e-24,     Score=281

KEGG

101746786    K00069 15-hydroxyprostaglandin dehydrogenase (NAD) [EC:1.1.1.141] | (RefSeq) 15-hydroxyprostaglandin

GO

GO:0016491   GO:0004022   GO:0005737   GO:0008152   GO:0019805   GO:0008270   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

Length:

508

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.42797

Exp number, first 60 AAs:

0.05495

Total prob of N-in:

0.06093

outside

1  -  508

 

 

Pi

224.956665

Theta

180.470072

Tajima's D

0.65199

CLR

0

CSRT

0.559222038898055

Interpretation

Uncertain