Gene

KWMTBOMO05870

Pre Gene Modal

BGIBMGA002771

Annotation

low_density_lipoprotein_receptor-related_protein-like_protein_precursor_[Bombyx_mori]

Location

Bomo_Chr10(+):13007721-13016434      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.006 PlasmaMembrane   Reliability : 1.085

CDS

ATGGCATACAAAGTTCTACGGAGAGAGCACGCCACAGTCAGATACGGCGGTACGCCTCTATTAGATCGTCCCTTTTTCAAACTGAGACCTATAGCCGTCCCCGTAAACATTTCACGCGAAGATACGAATGCAAGGTCGACACGAACGCCCGAGTATTACCTCGGGGATTTGATCTCCGGAACTTATTGCTCCCGGATATTCAGCGACTGCGATCGTAAAAACTGTAGGTTACAATCACCGAATTTCCCTGGCGTTTACCCGAGAAATTTGACGTGTTACTATGCCGTGCGACAACACGAGGTCCCTCAGGGTAAACACGCCTTGATTGTGGTGAAACAGCCCAACGGGCAGTTGATTTCTATAAGGAGTCAGAAGGCTTTGTATGCTGCCCAACAAGAACGGGGTAACAACGGAAGAGAGCTGAAATTTTGGCAACAGTGTGACGAGGTTCAGGATTATGTTACGGTATACGATGGCTACACAACTAGAGACCCTGTCGTGCTAAGGTTTTGTGGAGGCGGTGTGGCTGTCCCAGAAGCGATATCGAGTGGACCTGAGTTACTGGTCGAATTCACTACGTCCCCATTTGGCACATTCCTTCAGCCAGCAACTTTACAATCACTACACGGGTTTCAACTTGAAGTCGAAGTCAGGTTCGTTGATCAACAGTCGCCTACATATGCGAAAAACAAGAGAACTTGCGAATTCTGGATCCGAGGGACAGGTCGTGGTGTTTTGGAGCATCCGCAACATTCTTTACCGCCGAACACCACGTGCCTTTATCACATGCAAGGGATTGACACCTCCGGGCCTTCGGGACGCCACATAATTTACAGACGGCCGTCGTTTTCGGCTCCACGATTCAGGGTTTGGTTTTCGGTATTGAAATTTTATGTGACCAACGCTCTGAACCCTAACTTGCCCGAGGACGAATACTGCGGAAGCCATTTTAATATATGGGATGGTCCGATGAGAATATCGCCTGGTTGCAGCGATATATTTTGTGACAAAGAGCGGTCAGTCCAAATGTCAAGAGCGACATCCCCTCAATCAGTAATTGTGGGTCGACCTCCTACGAATGCAACACTCATAGCCAGATTCTGCAGGGAAAGAGCACCCAGGACATGCGAACATGCACTGCTGAAAAAATCCAGAGCCTGCACGAAAACAGAAAGCTTCCTTTCCAAGGGGGATTCTTTGACTTTGGAATTGAAGTTAACTCAAGGAACAGCTTTGAAACCAGTGTTCTTCAAGGCATTATACGAATTCGTGGATCTACACCAAGATGGCGAGCCTTGGGGTCGTGGTCCGTGTTCTCGACGATTTGCCTCACGATCCTTTCCTGAAGCTCCTCCCGATCCACCCATTAATTTTTCTTCACCGAGAGACGTGTTCTTGTATGGACGAGGTGGTGCCAGAAATATTAGTTGCACGTATCGCTTCGAAGCAAATCCTGGTGAAGTGGTCAGACTAAGGGTTTGGGGTGTTCGAAGTGGTGGCAGATTGTGTCGATCGGTGCATTCCGCCCACGCACCCTGGTATCGATGCGCCGGTGACCTCACAGCAGCTGTGAGGATATTCGACAGACCTTGGAAAAACATTGGCTCTGGGATACCGAGAGATTGCTTGTGCAGTGACGTCGGCGACTACGAGTTCGTGTCTTCGTCAACTGTGGCCGAGCTGAAATTCGATGTGGTGAATATGACGGCGACAGATGACTTCCGATCTTTTGGCTTCGAAGCGTCTGTAGAGTTTGTCAGATACGATTCCGTTTGTGAAAGTACCCATCGAGTGTATGGAGCCAGTGGAGAACTTAGATTATCCGCTACATTACCAGACTCGGAAGCAGAGCATTGTGAACATCGCCCTTGGCTAATAGATCCCTCGCCGGGTCATTATCTCTACTTACAAGTGCGCGGATCAATCATCAGTGAACCAACGTTGGACAACTTTACTCTTCTCAACAATATCACAGTAGCACCAGATTTAAGGCACTTGTGCAGAACACAAAACAGAATCGCCGTTTACGCTGGAGGGTTAATGCCCGTTTATATTTGCCCTGAGTCTCCTGAGCAGGATACAGAAGAGGTAGTAGAAATTTTCTCTGAAGGCTGGTCTAAGGATGTAGACGAACTTGCTCGACACGTGCTACAACCCGGACCTTCTCCTGACCGATTCGACTTGGAGTTCCCACGCTCTTTAGCTGTTGAACTCATCGCTGTAGAAGCCGGAAATTACTTTGTTTCGTGGCTAGAACTCTCTAAGAGGTATACCTGCATCTTTCGCCTTCTGTGA

Protein

MAYKVLRREHATVRYGGTPLLDRPFFKLRPIAVPVNISREDTNARSTRTPEYYLGDLISGTYCSRIFSDCDRKNCRLQSPNFPGVYPRNLTCYYAVRQHEVPQGKHALIVVKQPNGQLISIRSQKALYAAQQERGNNGRELKFWQQCDEVQDYVTVYDGYTTRDPVVLRFCGGGVAVPEAISSGPELLVEFTTSPFGTFLQPATLQSLHGFQLEVEVRFVDQQSPTYAKNKRTCEFWIRGTGRGVLEHPQHSLPPNTTCLYHMQGIDTSGPSGRHIIYRRPSFSAPRFRVWFSVLKFYVTNALNPNLPEDEYCGSHFNIWDGPMRISPGCSDIFCDKERSVQMSRATSPQSVIVGRPPTNATLIARFCRERAPRTCEHALLKKSRACTKTESFLSKGDSLTLELKLTQGTALKPVFFKALYEFVDLHQDGEPWGRGPCSRRFASRSFPEAPPDPPINFSSPRDVFLYGRGGARNISCTYRFEANPGEVVRLRVWGVRSGGRLCRSVHSAHAPWYRCAGDLTAAVRIFDRPWKNIGSGIPRDCLCSDVGDYEFVSSSTVAELKFDVVNMTATDDFRSFGFEASVEFVRYDSVCESTHRVYGASGELRLSATLPDSEAEHCEHRPWLIDPSPGHYLYLQVRGSIISEPTLDNFTLLNNITVAPDLRHLCRTQNRIAVYAGGLMPVYICPESPEQDTEEVVEIFSEGWSKDVDELARHVLQPGPSPDRFDLEFPRSLAVELIAVEAGNYFVSWLELSKRYTCIFRLL

Uniprot

B1B558   H9IZT6   A0A2H1VYU1   A0A2W1BRG3   A0A2A4K9S5   A0A3S2M9Y6   + More
A0A194QWE6   A0A194Q9M9   A0A212F0K8   A0A0L7KNE2   A0A0L7KNG2   A0A067R7E6   F4W516   A0A158NDI5   A0A195CEV3   A0A3L8DN15   A0A088A128   A0A195BQ33   A0A195D9W5   A0A151XEB7   A0A139WBM9   A0A195F490   A0A0C9R1A0   A0A026X3E2   E0V9K2   A0A154PRJ0   A0A0L7QUS5   T1HHN8   K7IX36   A0A336KGA1   A0A336KH36   A0A1I8PUT1   A0A0N0U5H3   A0A2C9GPD1   A0A0J9RZ35   A0A0J9S0E0   M9PG87   A0A1I8PUU9   A0A1W4UCC2   A0A0Q5UHK0   Q17IR5   Q7PP31   B4N3W2   A0A0J9UQG3   A0A0J9RYZ2   A0A3B0J5E4   A0A0P8Y9V5   A0A3B0JU47   B4IAH1   Q9VPA1   B4PEN6   A0A0Q9XV19   A0A1W4UP22   B3NIT2   A0A0M5J7S5   A0A1B0CN39   A0A0P8XU36   B3M6W0   B4LB68   B4L9F4   A0A0Q9XGZ5   N6T4A6   A0A1A9XF20   B4J0Z5   A0A0Q9WI58   A0A0Q9WR28   W8C8T0   W8BX11   A0A1A9ZTV4   A0A2S2P1H5   A0A0R1E8C4   J9LBR5   A0A2S2QIH8   A0A1J1IAL4   A0A1B0G6C5   B4QJ86   A0A182FFA3   A0A182PB74   A0A1I8MMX6   A0A182YNW7   A0A182VEL6   A0A182X8Z3   A0A182UE33   A0A182WC42   A0A182NJ48   A0A182M4T9   A0A182J0J3   A0A182Q9V2   A0A0L0CNS0   W5JQN4   E0VKW7   A0A1B0BBU0   A0A1A9X529   A0A0T6AW00   A0A3S2LUX9   A0A0J7L4Y6  

Pubmed

18505883    19121390    28756777    26354079    22118469    26227816    + More
24845553    21719571    21347285    30249741    18362917    19820115    24508170    20566863    20075255    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    17510324    12364791    14747013    17210077    26109357    26109356    17550304    18057021    23537049    24495485    25315136    25244985    26108605    20920257    23761445   

EMBL

AB360591    BAG12564.1    BABH01019213    BABH01019214    BABH01019215    ODYU01005285    + More
SOQ45988.1    KZ149998    PZC75360.1    NWSH01000014    PCG80829.1    RSAL01000003    RVE54804.1    KQ461175    KPJ07891.1    KQ459302    KPJ01720.1    AGBW02011082    OWR47234.1    JTDY01008594    KOB64494.1    JTDY01007968    KOB64833.1    KK852687    KDR18394.1    GL887596    EGI70712.1    ADTU01012606    ADTU01012607    ADTU01012608    ADTU01012609    ADTU01012610    ADTU01012611    KQ977827    KYM99419.1    QOIP01000006    RLU21218.1    KQ976424    KYM88248.1    KQ981082    KYN09652.1    KQ982254    KYQ58724.1    KQ971372    KYB25368.1    KQ981820    KYN35201.1    GBYB01001735    JAG71502.1    KK107020    EZA62531.1    DS234994    EEB10058.1    KQ435078    KZC14511.1    KQ414735    KOC62226.1    ACPB03000410    AAZX01003790    AAZX01015851    UFQS01000243    UFQT01000243    SSX01903.1    SSX22280.1    UFQS01000465    UFQT01000465    SSX04226.1    SSX24591.1    KQ435776    KOX74932.1    APCN01002271    CM002912    KMZ00894.1    KMZ00890.1    AE014296    AGB94824.1    CH954178    KQS44339.1    CH477237    EAT46575.1    AAAB01008960    EAA11118.5    CH964095    EDW79317.2    KMZ00891.1    KMZ00892.1    KMZ00893.1    OUUW01000002    SPP76885.1    CH902618    KPU78217.1    SPP76886.1    CH480826    EDW44284.1    AY113343    AAF51654.2    AAM29348.1    CM000159    EDW95110.2    CH933816    KRG07736.1    EDV52578.2    CP012525    ALC42911.1    AJWK01019761    AJWK01019762    AJWK01019763    KPU78218.1    EDV39796.2    CH940647    EDW68632.2    EDW17329.2    KRG07731.1    KRG07732.1    KRG07733.1    KRG07734.1    KRG07735.1    APGK01044261    APGK01044262    APGK01044263    KB741022    ENN74974.1    CH916366    EDV95816.1    KRF83935.1    KRF83936.1    KRF83938.1    KRF83937.1    GAMC01002774    JAC03782.1    GAMC01002773    JAC03783.1    GGMR01010651    MBY23270.1    CH891929    KRK05369.1    ABLF02039535    ABLF02039539    ABLF02050433    GGMS01008308    MBY77511.1    CVRI01000047    CRK97333.1    CCAG010000608    CM000363    EDX11303.1    AXCM01003578    AXCN02000457    AXCN02000458    JRES01000234    KNC33099.1    ADMH02000730    ETN65225.1    DS235255    EEB14023.1    JXJN01011668    JXJN01011669    LJIG01022713    KRT79099.1    RSAL01000196    RVE44555.1    LBMM01000589    KMQ98012.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000037510    UP000027135    UP000007755    UP000005205    UP000078542    UP000279307    UP000005203    UP000078540    UP000078492    UP000075809    UP000007266    UP000078541    UP000053097    UP000009046    UP000076502    UP000053825    UP000015103    UP000002358    UP000095300    UP000053105    UP000075840    UP000000803    UP000192221    UP000008711    UP000008820    UP000007062    UP000007798    UP000268350    UP000007801    UP000001292    UP000002282    UP000009192    UP000092553    UP000092461    UP000008792    UP000019118    UP000092443    UP000001070    UP000092445    UP000007819    UP000183832    UP000092444    UP000000304    UP000069272    UP000075885    UP000095301    UP000076408    UP000076407    UP000075902    UP000075920    UP000075884    UP000075883    UP000075880    UP000075886    UP000037069    UP000000673    UP000092460    UP000091820    UP000036403   

PRIDE

B1B558    H9IZT6    M9PG87    Q9VPA1   

Pfam

PF00057   Ldl_recept_a        + More
PF00431   CUB

Interpro

IPR002172   LDrepeatLR_classA_rpt        + More
IPR000859   CUB_dom       
IPR035914   Sperma_CUB_dom_sf       
IPR036055   LDL_receptor-like_sf       
IPR023415   LDLR_class-A_CS       

SUPFAM

SSF49854   SSF49854        + More
SSF57424   SSF57424       

Gene 3D

2.60.120.290     4.10.400.10    

CDD

cd00112  LDLa
cd00041  CUB

ProteinModelPortal

B1B558   H9IZT6   A0A2H1VYU1   A0A2W1BRG3   A0A2A4K9S5   A0A3S2M9Y6   + More
A0A194QWE6   A0A194Q9M9   A0A212F0K8   A0A0L7KNE2   A0A0L7KNG2   A0A067R7E6   F4W516   A0A158NDI5   A0A195CEV3   A0A3L8DN15   A0A088A128   A0A195BQ33   A0A195D9W5   A0A151XEB7   A0A139WBM9   A0A195F490   A0A0C9R1A0   A0A026X3E2   E0V9K2   A0A154PRJ0   A0A0L7QUS5   T1HHN8   K7IX36   A0A336KGA1   A0A336KH36   A0A1I8PUT1   A0A0N0U5H3   A0A2C9GPD1   A0A0J9RZ35   A0A0J9S0E0   M9PG87   A0A1I8PUU9   A0A1W4UCC2   A0A0Q5UHK0   Q17IR5   Q7PP31   B4N3W2   A0A0J9UQG3   A0A0J9RYZ2   A0A3B0J5E4   A0A0P8Y9V5   A0A3B0JU47   B4IAH1   Q9VPA1   B4PEN6   A0A0Q9XV19   A0A1W4UP22   B3NIT2   A0A0M5J7S5   A0A1B0CN39   A0A0P8XU36   B3M6W0   B4LB68   B4L9F4   A0A0Q9XGZ5   N6T4A6   A0A1A9XF20   B4J0Z5   A0A0Q9WI58   A0A0Q9WR28   W8C8T0   W8BX11   A0A1A9ZTV4   A0A2S2P1H5   A0A0R1E8C4   J9LBR5   A0A2S2QIH8   A0A1J1IAL4   A0A1B0G6C5   B4QJ86   A0A182FFA3   A0A182PB74   A0A1I8MMX6   A0A182YNW7   A0A182VEL6   A0A182X8Z3   A0A182UE33   A0A182WC42   A0A182NJ48   A0A182M4T9   A0A182J0J3   A0A182Q9V2   A0A0L0CNS0   W5JQN4   E0VKW7   A0A1B0BBU0   A0A1A9X529   A0A0T6AW00   A0A3S2LUX9   A0A0J7L4Y6  

PDB

6GJE     E-value=0.00341937,     Score=98

KEGG

100144543    no KO assigned | (RefSeq) Lrpl; low density lipoprotein receptor-related protein-like protein

GO

GO:0016021   GO:0005886  

Length:

764

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.20691

Exp number, first 60 AAs:

0.00085

Total prob of N-in:

0.00137

outside

1  -  764

 

 

Pi

235.926365

Theta

208.658709

Tajima's D

0.457592

CLR

0.327606

CSRT

0.505174741262937

Interpretation

Uncertain