Gene

KWMTBOMO05859

Pre Gene Modal

BGIBMGA006967

Annotation

PREDICTED:_transcription_initiation_factor_TFIID_subunit_2_[Papilio_xuthus]

Location

Bomo_Chr10(+):12620176-12636439      View in EpiBrowser

Full name

Transcription initiation factor TFIID subunit 2      

Alternative Name

Transcription initiation factor TFIID 150 kDa subunit

Location in the cell

Nuclear   Reliability : 3.559

CDS

ATGAAAAAAGAACGTACGGGCGACAATTGTCGCCCATTTAAATTAGCTCATCAAATTTTGAGTTTAACGGGAATAAGCTTTGAAAGAAGAAGCGTTATTGGATTTGTGGAACTTACTGTCGTTCCCCTTAAGGATAACTTACGCTACATTCGTCTAAATGCGAAGCAATCTCGAATATATAGAGTGTGCTTAAATGATCAATATGAAGCAAATTTTCAGTACTTTGACCCATTTCTGGATATATGTCAAGCCGATCCAAATACGAGATCACTGGAAGCATTCTCTCAGTATCATTTAACTGCAGCACAGAAGACAGACCCTGACCATAACTCAGGAGAACTTCACATTCAAATACCTGAAGAAGCAGCTCACTTAGTTGGTGAAGGCCGAGGGCTCAGAATTGGTATTGAATTTTCACTTGAATCTCCCCAAGGGGGCATGCATTTTGTTGTACCTGAGGGAGAAGGTACTTTGACAGAGAAATCAGCGCACATGTTTACATATGGACATTCTGCTCGACTATGGTTCCCATGTGTGGATAGTTTTGCTGAGCCTTGCACTTGGAAACTGGAATTCACTGTTGATGAATGCCTCACAGCTGTTTCATGTGGAGAACTAGTAGATGTTATTTATACACCTGATCATAGGAGGAAAACATTTCATTATTTAGTGAATACTCCAGCTTGCGCACCAAACATAGCATTGGCTATTGGACCATTTGAAACTTATGTTGATCCTTTCATGAATGAAGTAACACATTATTGCTTACCAAATTTGCTACAAATATTAAAGAACACCGTAAGATATTTGCATGAGGCATTTGAATTCTATGAAGAAACATTATCAACTCGATATCCATATCCCTGTTACAAACAAGTTTTTGTTGATGAGACAGAAGATGACGCAACTGCTTACACAACTATTTCGATATTAAGCACTCACCTGCTACACTCGATTGCTATCATCGACCAGACTTACATCAGCAGGAAGGCAATGGCACAAGCAGTGGCCGAGCAGTTTTTCGGTTGTTTTATAACTATGCAGAACTGGTCAGATCTGTGGCTAGCAAAAGGTATACCGGACTATTTATGCGGACTGTACTCCAAGAAATGTTTCGGGAACAACGCCTATCGGTATTGGATACATCAGGAGTTGAAAGAGGTGATGGGTTACGAAGAACAATATGGCGGTATAGTCTTAGACCCGTGGCAGCCGCCCGCTAGTGGAACCAGGATTGAACCCAATGTCTTCTATTTCCCCGTACGCAATGTTCATACCATGTCGCCGCGGTATATTGAAGTTATGCGCAAAAAATCCCATTTGGTACTACGAATGTTGGAGCAGCGTATTGGACAAGAGCTCCTGCTTCAAGTATTTAACAAGCAGTTGGCGTTGGCCACCAATGCGGCCAATACAAAGATCGGGAGTGGGCTATGGGGCCACTTGTTGCTATCGACCAACTTGTTTGTCAAAGCTATATTCACGGTGACTGGTAAAGATATGGCTGTGTTCGTCGACCAGTGGGTGAGGACCGGAGGGCACGCCAAATTTCAATTGACATCAGTCTTTAATAGAAAAAGGAACACCGTAGAACTTGAGATACGACAGGACTGCGTGCACGAGCGCGGTATACGTAAATACGTGGGTCCCCTGCTCGTCCAGTTGCAAGAGTTGGACGGTACATTCAAGCACACATTGCAGATTGAGAATACGGTGGTCAAAGCCGATATAACTTGTCACAGCAAGAGTCGGAGGAATAAGAAGAAGAAGATTCCTTTGTGCACCGGAGAAGAAGTAGACATGGATTTGTCGGCAATGGACGATTCTCCTGTACTGTGGATTCGTCTGGACCCGGAGATGTCGTTACTGCGTAGCACTATAATATCGCAGCCGGACTACCAGTGGCAGTACCAGCTGCGTCACGAGCGTGACGTCACCGCGCAGAGCGAGGCCATAGACGCGCTGCACACGTTCCCCGAGCCGGCCACGAGGAAGGCTCTCACGGACACCATTGAGAACGAACAGACGTTCTATAAGATACGGTGTAGGGCAGCGCATTGCTTGACAAAGGTGGCGAATGCAATGATAAGTTCATGGGCGGGTCCGCCGGCGATGTTGACGATCTTCCGCAAAATGTTCGGTTCGTTTTCCGCGCCGCATATAATAAAGCAGAACAACTTCGACAACTTGCAGCATTACTTCCTGCAGAAGACTATACCGGTCACCATGGCTGGTCTCCGGAACATCCACGGCATCTGTCCACCGGAAGTCGTGAAATTCCTCTTAGATCTCTTCAAGTACAACGACAATTCGAAGAATCATTTCTCTGATAACTACTACAGAGCTGCTTTGGTGGACGCTCTCGCTGCCACGATCACTCCAGTCATATCCGTGCTGCAACCCGGCGCGCCGATAACGGCAGACTCCCTGTCGGCGGACTCCAGACTGGTCCTGGAAGAGATAACCCGGGTCCTGAATTTGGAGAAGGTGCTGCCGTGCTACAAGAACACGGTGACGGTGAGCTGCCTGCGCGCCATCCGCCGCCTGCAGCAGTGCGGCCACCTGCCCAGCACGCCCATGATATTCAGGGCCTATGCGCAGTACGGACAGTACATTGATGTGCGACTGGCGGCCTTCGAGTGCCTGGTCGAGTTCGTCCGAGTGGACGGGAAGCCGGAGGACCTGGCGTCGCTGCTGACGGCCGTGGAGAGCGACCCCGACCCGGGCGTGCGGCACGGCCTGGCGCGCCTGCTCGTCGACACGCCGCCCTTCGAGCGCGCGCAGAGGCACCGCCTCGACTCCGAGACGGTGGTGCACAGAATATGGAACAATATAAACAGTAATTTGTCGAACGACGCTCGTCTCCGGTGCGACCTTGTGGACCTGTATTACACGTTGTACGGCGCTAAACGTCCTATTTGCTGTCCGCTACCCGAAATACAAGCGATGATAAAGCAGAACCATCAAAAAGAACGAGAACGCCTCGAGAGGGAACGAGAAAGGGAGAGGGAAAAGGAAAGGGAGAGGGAGAGACAGAGCAATCTGGAGTTGAAGCCCGTGATCAAACAGGAGATTGATGACGTGAAATACGATTCGACGATTGGTCCAATGACGAGTACATCGCTATTGGACAATAAAATGGACATCACAGATGAGAACGTGCTTCCGGTTCCGCTGTCCAGTATCAAAGAGGAGGACGTGAAGGTTGACGTAACGACAGTTTCCGCTGAAATTCCCTTAAGAGTTTTTAATGATGATTCGAAACGAGAATTCAGTTCAGATAATGCTGTGGCTCTGCCCGGTATCCCGGGGACTTCGGGACCCATCGGCTTCGAACCTGGAATGTTCAGGCCCCTGAAGGATGAGCTCGGAGCCCCTAAGGCAAAGAAAAAGAAGAAAGAGAAAAAGAAGCACAAACACAAACATAAACACAAGCACAGCAGCAAAGATAAGTCTAAAGAGCACAAGGACAGGTCGTTGCCCCCGAGCCTGCCCCTCGGCACCGACCATCTGAAGATTAAAGAGGAGACCCGTGAGACTCTCAGCTCTTTCAGCTCGAGTCAAAGTCCCTCTGAAGATATCTCCAGCACGCAGGGCAATATGAGTTTTTGA

Protein

MKKERTGDNCRPFKLAHQILSLTGISFERRSVIGFVELTVVPLKDNLRYIRLNAKQSRIYRVCLNDQYEANFQYFDPFLDICQADPNTRSLEAFSQYHLTAAQKTDPDHNSGELHIQIPEEAAHLVGEGRGLRIGIEFSLESPQGGMHFVVPEGEGTLTEKSAHMFTYGHSARLWFPCVDSFAEPCTWKLEFTVDECLTAVSCGELVDVIYTPDHRRKTFHYLVNTPACAPNIALAIGPFETYVDPFMNEVTHYCLPNLLQILKNTVRYLHEAFEFYEETLSTRYPYPCYKQVFVDETEDDATAYTTISILSTHLLHSIAIIDQTYISRKAMAQAVAEQFFGCFITMQNWSDLWLAKGIPDYLCGLYSKKCFGNNAYRYWIHQELKEVMGYEEQYGGIVLDPWQPPASGTRIEPNVFYFPVRNVHTMSPRYIEVMRKKSHLVLRMLEQRIGQELLLQVFNKQLALATNAANTKIGSGLWGHLLLSTNLFVKAIFTVTGKDMAVFVDQWVRTGGHAKFQLTSVFNRKRNTVELEIRQDCVHERGIRKYVGPLLVQLQELDGTFKHTLQIENTVVKADITCHSKSRRNKKKKIPLCTGEEVDMDLSAMDDSPVLWIRLDPEMSLLRSTIISQPDYQWQYQLRHERDVTAQSEAIDALHTFPEPATRKALTDTIENEQTFYKIRCRAAHCLTKVANAMISSWAGPPAMLTIFRKMFGSFSAPHIIKQNNFDNLQHYFLQKTIPVTMAGLRNIHGICPPEVVKFLLDLFKYNDNSKNHFSDNYYRAALVDALAATITPVISVLQPGAPITADSLSADSRLVLEEITRVLNLEKVLPCYKNTVTVSCLRAIRRLQQCGHLPSTPMIFRAYAQYGQYIDVRLAAFECLVEFVRVDGKPEDLASLLTAVESDPDPGVRHGLARLLVDTPPFERAQRHRLDSETVVHRIWNNINSNLSNDARLRCDLVDLYYTLYGAKRPICCPLPEIQAMIKQNHQKERERLEREREREREKERERERQSNLELKPVIKQEIDDVKYDSTIGPMTSTSLLDNKMDITDENVLPVPLSSIKEEDVKVDVTTVSAEIPLRVFNDDSKREFSSDNAVALPGIPGTSGPIGFEPGMFRPLKDELGAPKAKKKKKEKKKHKHKHKHKHSSKDKSKEHKDRSLPPSLPLGTDHLKIKEETRETLSSFSSSQSPSEDISSTQGNMSF

Description

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. An essential subunit binds to core promoter DNA.

Subunit

Belongs to the TFIID complex which is composed of TATA binding protein (Tbp) and a number of TBP-associated factors (TAFs). Interacts with Tbp, Taf1, Taf11 and Taf12.

Similarity

Belongs to the TAF2 family.

Keywords

Complete proteome   Direct protein sequencing   Nucleus   Phosphoprotein   Reference proteome   Transcription   Transcription regulation  

Feature

chain  Transcription initiation factor TFIID subunit 2

Uniprot

H9JBS2   A0A2A4JZ75   A0A2H1WDD7   A0A212ETI9   A0A194Q870   L7X0M9   + More
A0A3S2NRW6   D6WZT8   A0A0T6B482   A0A088AQA5   A0A2J7PJZ4   A0A1S4G185   A0A1Q3F5Y4   A0A0P6IT94   K7IVG4   A0A151J1F2   A0A195D198   A0A151XDB6   A0A158NH00   A0A1B6LDU4   F4WSR6   A0A0M8ZX29   A0A336MMD4   A0A336MRJ9   A0A067R4M3   A0A182GFP6   A0A182GC37   A0A1Y1JZD6   B0WMQ1   A0A0L7QZ07   E2AS08   A0A154NYC2   A0A026X344   A0A195B6H6   A0A0C9R2X1   A0A336MKX7   A0A1B0CCN9   A0A182RAA1   E0V9Y7   A0A182J7U6   A0A195FNU9   A0A182YPI7   A0A182XMQ0   A0A182PPD6   A0A182M9F3   A0A182VCN1   A0A182SU14   A0A182WKW0   A0A1I8PH89   A0A1I8PH07   A0A0L0CNQ5   A0A182QS22   A0A084VPX6   A0A1I8MN66   A0A182K509   A0A182NID5   A7UTV1   A0A182L320   A0A182HWK7   Q7Q6Q1   A0A182TUD2   W8B442   A0A0K8W6B0   A0A1J1IAX7   A0A2M4CS69   A0A2M4CS30   A0A023F4P3   A0A1A9XF11   A0A2M4AMY0   A0A1A9WDZ5   A0A182FDQ5   A0A1A9ZTU1   A0A1B0BBV2   A0A1B0G6D2   A0A1A9UVW5   B4LGL6   B4L098   A0A1B0DAF1   B4MLY0   B4PDX9   A0A0J9RSZ9   B4J2T3   T1HIJ1   B3NGN4   E8NHB1   Q24325   B3M574   A0A1W4UMT8   B4QNQ8   A0A0M4EJQ3   A0A0A9Y392   A0A146MGD9   E2BJS0   A0A3B0JNA2   B5DPM6   B4HLR1   B4H3H1   A0A3B0JW99   A0A2H8U174   A0A1Z5L4C4  

Pubmed

19121390    22118469    26354079    23674305    18362917    19820115    + More
26999592    20075255    21347285    21719571    24845553    26483478    28004739    20798317    24508170    20566863    25244985    26108605    24438588    25315136    12364791    20966253    24495485    25474469    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    8178153    12537569    8276241    18327897    25401762    26823975    15632085    28528879   

EMBL

BABH01024589    BABH01024590    BABH01024591    NWSH01000367    PCG76944.1    ODYU01007906    + More
SOQ51095.1    AGBW02012562    OWR44822.1    KQ459302    KPJ01723.1    KC469892    AGC92654.1    RSAL01000003    RVE54808.1    KQ971372    EFA09648.1    LJIG01009894    KRT82168.1    NEVH01024944    PNF16653.1    GFDL01012122    JAV22923.1    GDUN01000923    JAN94996.1    KQ980555    KYN15558.1    KQ976973    KYN06642.1    KQ982294    KYQ58343.1    ADTU01015419    ADTU01015420    GEBQ01018114    JAT21863.1    GL888327    EGI62723.1    KQ435840    KOX71363.1    UFQT01001519    SSX30895.1    SSX30897.1    KK852704    KDR18047.1    JXUM01010685    KQ560314    KXJ83099.1    JXUM01053738    KQ561789    KXJ77528.1    GEZM01096674    JAV54682.1    DS232000    EDS31136.1    KQ414685    KOC63835.1    GL442209    EFN63782.1    KQ434782    KZC04581.1    KK107020    EZA62441.1    KQ976574    KYM80111.1    GBYB01007167    JAG76934.1    SSX30896.1    AJWK01006930    DS235000    EEB10193.1    KQ981387    KYN41987.1    AXCM01010257    JRES01000234    KNC33084.1    AXCN02000881    ATLV01015067    KE525001    KFB40020.1    AAAB01008960    EDO63725.1    APCN01001497    EAA10740.3    GAMC01010640    JAB95915.1    GDHF01005899    JAI46415.1    CVRI01000042    CRK95593.1    GGFL01003975    MBW68153.1    GGFL01003974    MBW68152.1    GBBI01002773    JAC15939.1    GGFK01008810    MBW42131.1    JXJN01011682    CCAG010000615    CH940647    EDW69454.1    CH933809    EDW18044.1    AJVK01029047    AJVK01029048    CH963847    EDW73191.1    CM000159    EDW93975.2    CM002912    KMY98787.1    CH916366    EDV96074.1    ACPB03016793    CH954178    EDV51270.2    BT125987    AE014296    ADX35966.1    AGB94362.1    X79243    AY070564    CH902618    EDV40579.1    CM000363    EDX09925.1    CP012525    ALC43272.1    GBHO01019589    JAG24015.1    GDHC01000803    JAQ17826.1    GL448636    EFN84045.1    OUUW01000002    SPP76980.1    CH379069    EDY73646.2    CH480815    EDW40943.1    CH479206    EDW30911.1    SPP76981.1    GFXV01008134    MBW19939.1    GFJQ02004717    JAW02253.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000283053    UP000007266    + More
UP000005203    UP000235965    UP000002358    UP000078492    UP000078542    UP000075809    UP000005205    UP000007755    UP000053105    UP000027135    UP000069940    UP000249989    UP000002320    UP000053825    UP000000311    UP000076502    UP000053097    UP000078540    UP000092461    UP000075900    UP000009046    UP000075880    UP000078541    UP000076408    UP000076407    UP000075885    UP000075883    UP000075903    UP000075901    UP000075920    UP000095300    UP000037069    UP000075886    UP000030765    UP000095301    UP000075881    UP000075884    UP000007062    UP000075882    UP000075840    UP000075902    UP000183832    UP000092443    UP000091820    UP000069272    UP000092445    UP000092460    UP000092444    UP000078200    UP000008792    UP000009192    UP000092462    UP000007798    UP000002282    UP000001070    UP000015103    UP000008711    UP000000803    UP000007801    UP000192221    UP000000304    UP000092553    UP000008237    UP000268350    UP000001819    UP000001292    UP000008744   

PRIDE

H9JBS2    E8NHB1    Q24325   

Pfam

PF01433   Peptidase_M1        + More
PF15990   UPF0767
PF05189   RTC_insert
PF01137   RTC
PF12937   F-box-like

Interpro

IPR042097   Aminopeptidase_N-like_N        + More
IPR014782   Peptidase_M1_dom       
IPR016024   ARM-type_fold       
IPR037813   TAF2       
IPR002052   DNA_methylase_N6_adenine_CS       
IPR031933   UPF0767       
IPR036047   F-box-like_dom_sf       
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR016443   RNA3'_term_phos_cyc_type_2       
IPR013791   RNA3'-term_phos_cycl_insert       
IPR032675   LRR_dom_sf       
IPR001810   F-box_dom       
IPR023797   RNA3'_phos_cyclase_dom       
IPR020719   RNA3'_term_phos_cycl-like_CS       
IPR013792   RNA3'P_cycl/enolpyr_Trfase_a/b       
IPR037136   RNA3'_phos_cyclase_dom_sf       
IPR036553   RPTC_insert       

SUPFAM

SSF48371   SSF48371        + More
SSF55205   SSF55205       
SSF81383   SSF81383       

Gene 3D

2.60.40.1730     3.30.360.20     3.65.10.20     3.80.10.10    

CDD

cd00875  RNA_Cyclase_Class_I

ProteinModelPortal

H9JBS2   A0A2A4JZ75   A0A2H1WDD7   A0A212ETI9   A0A194Q870   L7X0M9   + More
A0A3S2NRW6   D6WZT8   A0A0T6B482   A0A088AQA5   A0A2J7PJZ4   A0A1S4G185   A0A1Q3F5Y4   A0A0P6IT94   K7IVG4   A0A151J1F2   A0A195D198   A0A151XDB6   A0A158NH00   A0A1B6LDU4   F4WSR6   A0A0M8ZX29   A0A336MMD4   A0A336MRJ9   A0A067R4M3   A0A182GFP6   A0A182GC37   A0A1Y1JZD6   B0WMQ1   A0A0L7QZ07   E2AS08   A0A154NYC2   A0A026X344   A0A195B6H6   A0A0C9R2X1   A0A336MKX7   A0A1B0CCN9   A0A182RAA1   E0V9Y7   A0A182J7U6   A0A195FNU9   A0A182YPI7   A0A182XMQ0   A0A182PPD6   A0A182M9F3   A0A182VCN1   A0A182SU14   A0A182WKW0   A0A1I8PH89   A0A1I8PH07   A0A0L0CNQ5   A0A182QS22   A0A084VPX6   A0A1I8MN66   A0A182K509   A0A182NID5   A7UTV1   A0A182L320   A0A182HWK7   Q7Q6Q1   A0A182TUD2   W8B442   A0A0K8W6B0   A0A1J1IAX7   A0A2M4CS69   A0A2M4CS30   A0A023F4P3   A0A1A9XF11   A0A2M4AMY0   A0A1A9WDZ5   A0A182FDQ5   A0A1A9ZTU1   A0A1B0BBV2   A0A1B0G6D2   A0A1A9UVW5   B4LGL6   B4L098   A0A1B0DAF1   B4MLY0   B4PDX9   A0A0J9RSZ9   B4J2T3   T1HIJ1   B3NGN4   E8NHB1   Q24325   B3M574   A0A1W4UMT8   B4QNQ8   A0A0M4EJQ3   A0A0A9Y392   A0A146MGD9   E2BJS0   A0A3B0JNA2   B5DPM6   B4HLR1   B4H3H1   A0A3B0JW99   A0A2H8U174   A0A1Z5L4C4  

PDB

6MZM     E-value=0,     Score=2770

KEGG

101745855    K03128 transcription initiation factor TFIID subunit 2 | (RefSeq) transcription initiation factor TF

PATHWAY

03022    Basal transcription factors - Bombyx mori (domestic silkworm)

GO

GO:0008237   GO:0008270   GO:0005669   GO:0003743   GO:0045944   GO:0003682   GO:0006367   GO:0044212   GO:0008168   GO:0016021   GO:0042254   GO:0005730   GO:0060261   GO:0000979   GO:0017025   GO:0051123   GO:0000995   GO:0006352   GO:0008134   GO:0005634   GO:0006366   GO:0005488   GO:0046983   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

PANTHER

PTHR15137  

Subcellular location

Nucleus  

Length:

1203

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.30269

Exp number, first 60 AAs:

0.07279

Total prob of N-in:

0.05453

outside

1  -  1203

 

 

Pi

215.025903

Theta

171.123435

Tajima's D

0.798907

CLR

0.192372

CSRT

0.60021998900055

Interpretation

Uncertain