Gene

KWMTBOMO05858  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006895

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_17-like_[Bombyx_mori]

Location

Bomo_Chr10(-):12614577-12618145      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.689 Nuclear   Reliability : 1.312

CDS

ATGTGGGACTTGCCATACTTGTCTTGTTTAGTTTTGTATATATTTTCATTTCAAGTTATTGTTATAAATTCTCGCACCTCTAATATTTGGAAATTGAATTTAGAAGAAGACCTTATTGTAGATGGCAAAACTTTGTCTCAAGATGACACAGAAAAACCATTAAGTGAGGAAGACACCGTATTCAATATAATAACATCTACAGTTTACTACGGGAATACATGGACGAAACATGGATTTGATATGTTTTGCACAGATTGTCAGATTTATGAACAACAGAGAGCTGGCAGTGAAACTAATGAAGATACACCACCATCAGAAACAAATGGGCACTCAGATGATGAATATTTAGATTGTGGCAAAGCAGTAAACTTCACTTACTATGATAACTTAGTTGGAGTTGCTAGACGACACAGACATCCTAATGTACCTGAACCACAGGTTGCATTGATATTCACAAAAAAGAAAAATGGAGTCACGGAATTTGATATAAATTCTTTAGAGAAACGTCTAAAGAAGGCGAAAAGAGAAAAACCCAAATCAGTACAGTTATACAATCAGATTGGCAACTTTTGGAGAATCAAAGGAGACACTCGACAATCGATAGAGTGTTTCCGGCGAGCACTAGCAGTGGCACCTTACAATGCTGAGGTGCTACTGAATCTGGCGCGAGTCCTGTTCACGCTGCAGTACTTGGACGACGCCATCTACCTGACGCGCCGATCGCTCGAGGTGCAGCCCCCGGACCGTAGCGCATGGCAACAGTACTTCACGCTCGGCGAGATATTCAAAGCGTACGGACATTATCAGGTACACGATTTTAATCTATACTAA

Protein

MWDLPYLSCLVLYIFSFQVIVINSRTSNIWKLNLEEDLIVDGKTLSQDDTEKPLSEEDTVFNIITSTVYYGNTWTKHGFDMFCTDCQIYEQQRAGSETNEDTPPSETNGHSDDEYLDCGKAVNFTYYDNLVGVARRHRHPNVPEPQVALIFTKKKNGVTEFDINSLEKRLKKAKREKPKSVQLYNQIGNFWRIKGDTRQSIECFRRALAVAPYNAEVLLNLARVLFTLQYLDDAIYLTRRSLEVQPPDRSAWQQYFTLGEIFKAYGHYQVHDFNLY

Uniprot

H9JBK0   A0A1E1WCU9   A0A2A4JZK5   A0A2H1WF45   A0A212ETP4   L7X3T5   + More
A0A194Q8K0   A0A2J7PJJ0   A0A2P8XQ71   A0A067RB78   A0A1B6D116   A0A1B6DAN3   E0VG00   A0A1B6HU72   A0A1B6EXJ5   A0A224XEH6   A0A069DYS8   T1I3J5   A0A2R7W7F2   A0A1Y1LW23   D6X1D3   A0A139WBW0   A0A0A9Z1X8   A0A1W4W2L2   A0A1S4G986   A7USE5   A0A182JZ39   A0A182PFV6   A0A084WFH1   A0A182F9W4   A0A182M3E6   A0A2M4BQA6   A0A2M4BQL0   W5J840   A0A2M4BQI1   A0A182MZJ5   A0A182Y7R7   A0A182XDZ6   A0A182V1R8   A0A2M4AQ78   A0A182QJM7   A0A182UJJ3   A0A182HGM7   A0A182RH77   A0A182IKB8   F4WUY4   E2BXA7   A0A026WT09   A0A336LH52   A0A3L8DHI5   A0A151WW58   A0A195FX42   A0A195ATV6   A0A151JCJ8   A0A0J7KZT4   A0A2A3ED17   V9IMA5   A0A088A790   E9IZ96   E2AAP5   A0A0L7QNJ1   A0A154PMC5   K7ITE6   A0A195CXJ4   A0A158P152   A0A0K8UVK7   A0A1D2NMT1   A0A1S3HIQ7   A0A1S3HJM9   A0A034WJL8   R7UPC8   A0A182W4I1   K1QRJ8   J3JWN5   A0A1Q3G0D8   A0A1S3D830   A0A210Q3V2   A0A2T7PPV4   A0A182T7Y3   C3XPH2   A0A0N0U2N3   A0A0K2TQ94   W4XHP6   W8B737   A0A0A9Z443   B0WE02  

Pubmed

19121390    22118469    23674305    26354079    29403074    24845553    + More
20566863    26334808    28004739    18362917    19820115    25401762    26823975    12364791    24438588    20920257    23761445    25244985    21719571    20798317    24508170    30249741    21282665    20075255    21347285    27289101    25348373    23254933    22992520    22516182    28812685    18563158    24495485   

EMBL

BABH01024588    BABH01024589    GDQN01006232    GDQN01000969    JAT84822.1    JAT90085.1    + More
NWSH01000367    PCG76943.1    ODYU01007906    SOQ51094.1    AGBW02012562    OWR44821.1    KC469892    AGC92655.1    KQ459302    KPJ01724.1    NEVH01024947    PNF16502.1    PYGN01001545    PSN34156.1    KK852575    KDR21003.1    GEDC01017965    JAS19333.1    GEDC01027934    GEDC01014618    GEDC01010886    JAS09364.1    JAS22680.1    JAS26412.1    DS235129    EEB12306.1    GECU01029472    JAS78234.1    GECZ01027132    JAS42637.1    GFTR01005550    JAW10876.1    GBGD01001865    JAC87024.1    ACPB03021980    KK854357    PTY15051.1    GEZM01048943    JAV76255.1    KQ971372    EFA09505.2    KYB25417.1    GBHO01004342    GBRD01000103    GDHC01018012    GDHC01011728    GDHC01005072    JAG39262.1    JAG65718.1    JAQ00617.1    JAQ06901.1    JAQ13557.1    AAAB01008846    EDO64323.2    ATLV01023349    KE525342    KFB48965.1    AXCM01002344    GGFJ01006124    MBW55265.1    GGFJ01006153    MBW55294.1    ADMH02001968    ETN60136.1    GGFJ01006123    MBW55264.1    GGFK01009551    MBW42872.1    AXCN02001283    APCN01005677    GL888378    EGI61998.1    GL451230    EFN79690.1    KK107109    EZA59137.1    UFQS01000005    UFQT01000005    SSW96945.1    SSX17332.1    QOIP01000008    RLU19904.1    KQ982691    KYQ52056.1    KQ981200    KYN45008.1    KQ976738    KYM75663.1    KQ979038    KYN23482.1    LBMM01001700    KMQ95876.1    KZ288279    PBC29673.1    JR052404    AEY61691.1    GL767121    EFZ14085.1    GL438137    EFN69495.1    KQ414851    KOC60195.1    KQ434978    KZC13009.1    AAZX01006673    KQ977141    KYN05366.1    ADTU01005773    GDHF01021939    JAI30375.1    LJIJ01000008    ODN06246.1    GAKP01004083    JAC54869.1    AMQN01001083    KB299137    ELU08379.1    JH816675    EKC24151.1    BT127653    AEE62615.1    GFDL01001788    JAV33257.1    NEDP02005113    OWF43410.1    PZQS01000002    PVD35451.1    GG666451    EEN69843.1    KQ436033    KOX67521.1    HACA01010833    CDW28194.1    AAGJ04170915    GAMC01009575    JAB96980.1    GBHO01004345    JAG39259.1    DS231903    EDS45132.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000235965    UP000245037    + More
UP000027135    UP000009046    UP000015103    UP000007266    UP000192223    UP000007062    UP000075881    UP000075885    UP000030765    UP000069272    UP000075883    UP000000673    UP000075884    UP000076408    UP000076407    UP000075903    UP000075886    UP000075902    UP000075840    UP000075900    UP000075880    UP000007755    UP000008237    UP000053097    UP000279307    UP000075809    UP000078541    UP000078540    UP000078492    UP000036403    UP000242457    UP000005203    UP000000311    UP000053825    UP000076502    UP000002358    UP000078542    UP000005205    UP000094527    UP000085678    UP000014760    UP000075920    UP000005408    UP000079169    UP000242188    UP000245119    UP000075901    UP000001554    UP000053105    UP000007110    UP000002320   

PRIDE

H9JBK0   

Pfam

PF13176   TPR_7        + More
PF13181   TPR_8
PF07719   TPR_2
PF10250   O-FucT
PF16363   GDP_Man_Dehyd
PF01370   Epimerase

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR013105   TPR_2       
IPR019378   GDP-Fuc_O-FucTrfase       
IPR016040   NAD(P)-bd_dom       
IPR036291   NAD(P)-bd_dom_sf       
IPR001509   Epimerase_deHydtase       

SUPFAM

SSF48452   SSF48452        + More
SSF51735   SSF51735       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9JBK0   A0A1E1WCU9   A0A2A4JZK5   A0A2H1WF45   A0A212ETP4   L7X3T5   + More
A0A194Q8K0   A0A2J7PJJ0   A0A2P8XQ71   A0A067RB78   A0A1B6D116   A0A1B6DAN3   E0VG00   A0A1B6HU72   A0A1B6EXJ5   A0A224XEH6   A0A069DYS8   T1I3J5   A0A2R7W7F2   A0A1Y1LW23   D6X1D3   A0A139WBW0   A0A0A9Z1X8   A0A1W4W2L2   A0A1S4G986   A7USE5   A0A182JZ39   A0A182PFV6   A0A084WFH1   A0A182F9W4   A0A182M3E6   A0A2M4BQA6   A0A2M4BQL0   W5J840   A0A2M4BQI1   A0A182MZJ5   A0A182Y7R7   A0A182XDZ6   A0A182V1R8   A0A2M4AQ78   A0A182QJM7   A0A182UJJ3   A0A182HGM7   A0A182RH77   A0A182IKB8   F4WUY4   E2BXA7   A0A026WT09   A0A336LH52   A0A3L8DHI5   A0A151WW58   A0A195FX42   A0A195ATV6   A0A151JCJ8   A0A0J7KZT4   A0A2A3ED17   V9IMA5   A0A088A790   E9IZ96   E2AAP5   A0A0L7QNJ1   A0A154PMC5   K7ITE6   A0A195CXJ4   A0A158P152   A0A0K8UVK7   A0A1D2NMT1   A0A1S3HIQ7   A0A1S3HJM9   A0A034WJL8   R7UPC8   A0A182W4I1   K1QRJ8   J3JWN5   A0A1Q3G0D8   A0A1S3D830   A0A210Q3V2   A0A2T7PPV4   A0A182T7Y3   C3XPH2   A0A0N0U2N3   A0A0K2TQ94   W4XHP6   W8B737   A0A0A9Z443   B0WE02  

PDB

1NA0     E-value=2.20791e-05,     Score=112

KEGG

101745706    no KO assigned | (RefSeq) tetratricopeptide repeat protein 17-like

GO

GO:0016021   GO:0030041   GO:0015629   GO:0016740   GO:0016757   GO:0006004   GO:0008446   GO:0050662   GO:0019673   GO:0005515   GO:0006810   GO:0006355   GO:0046983   GO:0008270   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

Length:

276

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

15.34656

Exp number, first 60 AAs:

14.45849

Total prob of N-in:

0.21079

POSSIBLE N-term signal

sequence

outside

1  -  276

 

 

Pi

361.925904

Theta

220.241149

Tajima's D

2.191177

CLR

0.403003

CSRT

0.910004499775011

Interpretation

Uncertain