Gene

KWMTBOMO05855  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006896

Annotation

PREDICTED:_U4/U6_small_nuclear_ribonucleoprotein_Prp31_[Amyelois_transitella]

Location

Bomo_Chr10(-):12576215-12603885      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.281

CDS

ATGTCTCTAGCTGACGAATTACTTGCTGATTTAGAAGAAAATGACGATGGTGAACTCGAAGCTGCTATCGAGAGCAAAACCAAAGAAGAATACGACTTTGCAGTTCCATATCCCGTCTTACCTAAAGAAGAAGAAATCAAGAATGTCTCGATAAGAGAACTCGCGAAACTAAGATATTCTGATCGTCTGAAACGTGTTATGAGTGAAATAGAATGTAATGCTGGAAATAACAGAAATAAGGTTGAAGTTGCTGGCTTAATGGAGTCTGACCCTGAGTATCAACTGATTGTGGAAGCAAATAATGTTGCTGTTGAAATTGATGGTGAAATAGCTATTATTCACAGATTTGTCCGTGACAAATATCAGAAACGGTTTCCTGAATTGGAATCTCTAATCATCACTCCATTGGAATACATAAGGACAGTGAAAGAACTTGGCAATGATTTGGACAGGGCTAAGAATAATGAAATATTACAGAGTTTTCTTACTCAGGCCACTATTATGATTGTTTCTGTTACTGCATCTACAACTCAAGGGAAATTACTAAGCCAAATTGAACTAGAAGAAATCAATGAGGCCTGTGATATGGCAAGTGAGCTGAACAATTTCAAATCGCAAATATATGAGTATGTTGAAAGTAGAATGACTTTTATTGCACCAAACATAACTGCCATTGTTGGAGCATCAACAGCAGCAAAAATCCTTGGTGTGGCCGGTGGATTGTCTAAATTATCAAAGATGCCAGCGTGTAATGTGTTACCTCTCGGGCAACAGAAGAAGACACTGTCAGGCTTCTCGCAAGCAACAGCTCTACCTCATACTGGGTTCATTTATTTTTCACAAATTGTACAAGATACAACACCTGAATTAAGGTACAAAGCTGCGAAATTAGTGTCGACTAAGTTAACATTAGCCGCCCGTGTGGACGCGTGCCACGAGAGCACCGATGGGCACATCGGTCGGCAACTACGGGAAAATATCGAAAAGAAACTAGATAAACTACAGGAACCCCCACCGGTGAAGTTCGTGAAACCCCTACCGAAGCCGATCGAACAAAGCAGGAAGAAGAGAGGCGGCAAACGTGTCAGGAAGATGAAGGAGCGTTACGCTATGACCGAGTTCAGGAAGAACGCCAACCGACTAAACTTTGCTGACATCGAAGATGACGCGTACCAAGAAGATTTAGGATACACGCGAGGCACGATCGGCAAGTCTAGCACGGGCCGAATCCGACTACCGCAAATCGACGAGAAAACGAAGGTCCGCATCAGCAAGACATTGCAAAAGAACTTACAGAAACAACAGCAGTACGGCGGTGCTACCAGTATTAGAAGACAAGTATCTGGTACTGCGTCTTCTGTGGCCTTCACGCCTCTACAGGGTTTGGAAATCGTCAATCCTCAAGCCGCAGAAACTAGGACCAACGAAGGCAATGCCAAGTATTTCTCTAATACATCCGGGTTCTTATCTGTGGGAAAGAAATCTGATTAA

Protein

MSLADELLADLEENDDGELEAAIESKTKEEYDFAVPYPVLPKEEEIKNVSIRELAKLRYSDRLKRVMSEIECNAGNNRNKVEVAGLMESDPEYQLIVEANNVAVEIDGEIAIIHRFVRDKYQKRFPELESLIITPLEYIRTVKELGNDLDRAKNNEILQSFLTQATIMIVSVTASTTQGKLLSQIELEEINEACDMASELNNFKSQIYEYVESRMTFIAPNITAIVGASTAAKILGVAGGLSKLSKMPACNVLPLGQQKKTLSGFSQATALPHTGFIYFSQIVQDTTPELRYKAAKLVSTKLTLAARVDACHESTDGHIGRQLRENIEKKLDKLQEPPPVKFVKPLPKPIEQSRKKRGGKRVRKMKERYAMTEFRKNANRLNFADIEDDAYQEDLGYTRGTIGKSSTGRIRLPQIDEKTKVRISKTLQKNLQKQQQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSVGKKSD

Uniprot

A0A212ETL8   A0A194QE36   A0A3S2TTI3   A0A2A4JYP9   S4PX48   A0A1E1WRZ0   + More
A0A194QRB4   L7WW56   A0A151IWX7   A0A151I376   A0A2J7RJ76   A0A067RFN2   A0A158NMD6   A0A2P8XXZ8   E2BA59   A0A154P8B9   A0A151JWN5   F4X5S9   A0A195D781   A0A151WVF6   A0A088A4A7   A0A0J7KN77   E2AHQ5   A0A0C9QMR6   A0A0L7QT99   A0A0T6B6P1   A0A1Y1LVH0   A0A310SFF8   J3JZ24   A0A2A3E7I8   D6X2L5   A0A026W0B4   A0A1Q3EYX1   A0A182V3A0   A0A182U9M8   A0A232ELL6   A0A182P1J8   A0A182KT25   A0A182HPQ4   A0A182JV09   A0A182LRG4   K7J9U0   A0A1B6BWS1   A0A182H4M4   A0A182GSV5   A0A182WD77   J9HZ33   A0A182R1W9   B3M728   A0A182MXD9   A0A182QUI0   Q9VUM1   A0A1W4VPB8   B4PCD9   B3NI01   B4QKL1   B4HI60   A0A1J1IQD6   A0A2M4BKT2   A0A2M4BKQ1   W5JCV3   Q7PV98   B4L132   A0A182JDF3   A0A084WM29   B0W564   B4LGU8   A0A0L0C0F3   A0A1B6KA95   A0A2S2QVV7   W8BUN6   A0A182FV96   A0A0M8ZUJ3   A0A1A9WE15   A0A1S4E7W3   D3TM87   A0A1A9YEF7   A0A1B0B7X5   A0A0K8TWW6   A0A1W4XL50   B4N517   J9JPX3   A0A1I8PNC7   B4IZG0   Q2M1A7   B4GUD9   A0A023F5A4   A0A0V0GAS8   A0A0P4VR95   T1HUF0   A0A1I8MIY3   A0A069DU29   A0A087T6S9   A0A1B0FJN1   A0A1A9ZS45   E0W0J5   A0A1A9V472   A0A1L8DFQ0   A0A0A9W543   T1ISX8  

Pubmed

22118469    26354079    23622113    23674305    24845553    21347285    + More
29403074    20798317    21719571    28004739    22516182    23537049    18362917    19820115    24508170    30249741    28648823    20966253    20075255    26483478    17510324    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    22936249    20920257    23761445    12364791    24438588    26108605    24495485    20353571    15632085    25474469    27129103    25315136    26334808    20566863    25401762    26823975   

EMBL

AGBW02012562    OWR44819.1    KQ459302    KPJ01726.1    RSAL01000003    RVE54812.1    + More
NWSH01000367    PCG76939.1    GAIX01005663    JAA86897.1    GDQN01001265    JAT89789.1    KQ461175    KPJ07884.1    KC469892    AGC92657.1    KQ980838    KYN12339.1    KQ976507    KYM82800.1    NEVH01002996    PNF40886.1    KK852665    KDR18987.1    ADTU01020390    PYGN01001178    PSN36890.1    GL446678    EFN87401.1    KQ434842    KZC08112.1    KQ981655    KYN38603.1    GL888742    EGI58169.1    KQ976750    KYN08718.1    KQ982701    KYQ51919.1    LBMM01005167    KMQ91767.1    GL439579    EFN67035.1    GBYB01004779    GBYB01004784    JAG74546.1    JAG74551.1    KQ414748    KOC61863.1    LJIG01009468    KRT83020.1    GEZM01047337    JAV76878.1    KQ766043    OAD53756.1    APGK01043399    BT128505    KB741014    KB632204    AEE63462.1    ENN75460.1    ERL90102.1    KZ288344    PBC27675.1    KQ971372    EFA09428.1    KK107519    QOIP01000009    EZA49365.1    RLU18626.1    GFDL01014556    JAV20489.1    NNAY01003528    OXU19250.1    APCN01003267    AXCM01004908    AAZX01012697    GEDC01031561    GEDC01003034    JAS05737.1    JAS34264.1    JXUM01109816    KQ565356    KXJ71059.1    JXUM01085391    KQ563500    KXJ73729.1    CH477506    EJY57745.1    CH902618    EDV40893.1    AXCN02001696    AE014296    AY051928    AAF49655.1    AAK93352.1    CM000159    EDW94849.1    CH954178    EDV52087.1    CM000363    CM002912    EDX10522.1    KMY99715.1    CH480815    EDW41556.1    CVRI01000056    CRL01756.1    GGFJ01004432    MBW53573.1    GGFJ01004433    MBW53574.1    ADMH02001525    ETN62182.1    AAAB01008986    EAA00197.5    CH933809    EDW18189.1    ATLV01024365    KE525351    KFB51273.1    DS231841    EDS34811.1    CH940647    EDW70563.1    JRES01001072    KNC25736.1    GEBQ01031614    JAT08363.1    GGMS01012662    MBY81865.1    GAMC01005902    JAC00654.1    KQ435840    KOX71440.1    EZ422539    ADD18815.1    JXJN01009745    GDHF01033335    JAI18979.1    CH964101    EDW79456.1    ABLF02025474    CH916366    EDV97735.1    CH379069    EAL30668.2    CH479191    EDW26222.1    GBBI01002438    JAC16274.1    GECL01001618    JAP04506.1    GDKW01001033    JAI55562.1    ACPB03005522    GBGD01001271    JAC87618.1    KK113697    KFM60818.1    CCAG010020214    DS235860    EEB19151.1    GFDF01008806    JAV05278.1    GBHO01040052    GBRD01005888    GDHC01015691    GDHC01000709    JAG03552.1    JAG59933.1    JAQ02938.1    JAQ17920.1    JH431449   

Proteomes

UP000007151    UP000053268    UP000283053    UP000218220    UP000053240    UP000078492    + More
UP000078540    UP000235965    UP000027135    UP000005205    UP000245037    UP000008237    UP000076502    UP000078541    UP000007755    UP000078542    UP000075809    UP000005203    UP000036403    UP000000311    UP000053825    UP000019118    UP000030742    UP000242457    UP000007266    UP000053097    UP000279307    UP000075903    UP000075902    UP000215335    UP000075885    UP000075882    UP000075840    UP000075881    UP000075883    UP000002358    UP000069940    UP000249989    UP000075920    UP000008820    UP000075900    UP000007801    UP000075884    UP000075886    UP000000803    UP000192221    UP000002282    UP000008711    UP000000304    UP000001292    UP000183832    UP000000673    UP000007062    UP000009192    UP000075880    UP000030765    UP000002320    UP000008792    UP000037069    UP000069272    UP000053105    UP000091820    UP000079169    UP000092443    UP000092460    UP000192223    UP000007798    UP000007819    UP000095300    UP000001070    UP000001819    UP000008744    UP000015103    UP000095301    UP000054359    UP000092444    UP000092445    UP000009046    UP000078200   

PRIDE

Q9VUM1   

Pfam

PF09785   Prp31_C        + More
PF01798   Nop
PF13850   ERGIC_N
PF07970   COPIIcoated_ERV

Interpro

IPR019175   Prp31_C        + More
IPR042239   Nop_C       
IPR027105   Prp31       
IPR036070   Nop_dom_sf       
IPR002687   Nop_dom       
IPR029012   Helix_hairpin_bin_sf       
IPR012976   NOSIC       
IPR039542   Erv_N       
IPR012936   Erv_C       

SUPFAM

SSF89124   SSF89124       

Gene 3D

1.10.246.90     1.10.287.660    

ProteinModelPortal

A0A212ETL8   A0A194QE36   A0A3S2TTI3   A0A2A4JYP9   S4PX48   A0A1E1WRZ0   + More
A0A194QRB4   L7WW56   A0A151IWX7   A0A151I376   A0A2J7RJ76   A0A067RFN2   A0A158NMD6   A0A2P8XXZ8   E2BA59   A0A154P8B9   A0A151JWN5   F4X5S9   A0A195D781   A0A151WVF6   A0A088A4A7   A0A0J7KN77   E2AHQ5   A0A0C9QMR6   A0A0L7QT99   A0A0T6B6P1   A0A1Y1LVH0   A0A310SFF8   J3JZ24   A0A2A3E7I8   D6X2L5   A0A026W0B4   A0A1Q3EYX1   A0A182V3A0   A0A182U9M8   A0A232ELL6   A0A182P1J8   A0A182KT25   A0A182HPQ4   A0A182JV09   A0A182LRG4   K7J9U0   A0A1B6BWS1   A0A182H4M4   A0A182GSV5   A0A182WD77   J9HZ33   A0A182R1W9   B3M728   A0A182MXD9   A0A182QUI0   Q9VUM1   A0A1W4VPB8   B4PCD9   B3NI01   B4QKL1   B4HI60   A0A1J1IQD6   A0A2M4BKT2   A0A2M4BKQ1   W5JCV3   Q7PV98   B4L132   A0A182JDF3   A0A084WM29   B0W564   B4LGU8   A0A0L0C0F3   A0A1B6KA95   A0A2S2QVV7   W8BUN6   A0A182FV96   A0A0M8ZUJ3   A0A1A9WE15   A0A1S4E7W3   D3TM87   A0A1A9YEF7   A0A1B0B7X5   A0A0K8TWW6   A0A1W4XL50   B4N517   J9JPX3   A0A1I8PNC7   B4IZG0   Q2M1A7   B4GUD9   A0A023F5A4   A0A0V0GAS8   A0A0P4VR95   T1HUF0   A0A1I8MIY3   A0A069DU29   A0A087T6S9   A0A1B0FJN1   A0A1A9ZS45   E0W0J5   A0A1A9V472   A0A1L8DFQ0   A0A0A9W543   T1ISX8  

PDB

6QX9     E-value=2.26195e-127,     Score=1167

KEGG

101745122    K12844 U4/U6 small nuclear ribonucleoprotein PRP31 | (RefSeq) U4/U6 small nuclear ribonucleoprotein

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000244   GO:0046540   GO:0005687   GO:0000398   GO:0016021   GO:0071011   GO:0005681   GO:0043021   GO:0003723  

PANTHER

PTHR13904  

Length:

496

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.53129

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01262

outside

1  -  496

 

 

Pi

193.277496

Theta

164.202099

Tajima's D

0.724933

CLR

0.497529

CSRT

0.578771061446928

Interpretation

Uncertain