SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05852
Pre Gene Modal
BGIBMGA006898
Annotation
PREDICTED:_cerebellar_degeneration-related_protein_2-like_isoform_X3_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.586
 

Sequence

CDS
ATGAGCGAGGAACAAGAACAGTGCGATTCATTCAATTCTTGGGAACTGAACGGGTTGAATTCTCTTGATCTTTGGGACTACACCGTCGAGCTGGAGTGCCTGCAAGGAACTGAAGATTTGCAACTGGCGGCCGAACTCGGGAAAACCCTACTCGAACGCAACAAGGAACTCGAGACAGCCCTTCGCCAGCATCAAAATGTTATTGAAGATCAAGCACAAGAAATCGAATATCTTACAAAGCAAACGGTTGCTTTGCGAGAGGTGAATGATTCAAGGTTGAGGATTTATGAGCAACTGGAACTCAGTATTCAAGATTTAGAACGAGCTAACCACAGACTAGCTGTCGATCATGCAGCCGACAAGAAACACATTAAGTCATTATGCTCAAACATTGACACTGTGGAGGCCAAATGCGAAGAACTACAAAAGACTGTGGACGAACTTAACGTTCAACTAGAGATCTACAGGCGAAGAGCTGAACGAAAACCCGAAAGCGAAAAACCCAAAGAGAAAGAGAAATCTGAACCATCGCAGAATTGCAAGAAACCCGAGGTAAATAGTACACCGAAGACGGTAGCACCTCTCCCGGAACTGACTAAAGAGGACGAGGATTTACTGAGGCTTAGCGATGCACTGCGAGAGAGTAAAGTGGCTTTCGCACAAGAACAGAGACGAGTCACTGAACTGGAGGAGCAATTGGCTTCTATGGTGCAAGAGAACAACAGACTACACGACCAGCTTAGGAACTGGCATACGAGAGAAGATGAGCCCAAGTCAATGCAAGAAGAATTCTCTATTCTCGAAGAAGTCAGACAAGGCCAATTGTGTATCAGGTGTCTGAGAGGTGTCGAACGAGATGACATGTCTTCTATGCTCGATGGTGATGATGACGATCGAAGCGCCATCAGTTCCGTCATATTGCCTCCATCGGGACAAGACAGCCCACGTGAAGATGTCACCAATAAACTCATCAAATTCGACAACGCCAAGGAAAAACTACTGAAAGGTACATGGGCCAATAAAGACGATGGTAATGCAAACCCATACAGAGAGCTGGTTGAAAAGTATGAGGCCCTACTCGAAGTGCAGCTGTCACAAGTTAAGAACATAAAGAAGAACAAACAGAACATTACGCCGAATTCGCAGAACCAATCAGGACCGGTCTCGCTTCAAGATGAACTTCAAACATCAGGAGATTACAGTCAGTTCAGCATCAAAGATACCGATGAGGAGAGTGGCCATGCTGATGAAACTCAAAACAACGACAAACAACCCCAGAAACCTGAGCCAACATCACGAAAGAAAATTATTCAAACCCCGGACTTTTCCGAAGCAGAGACCTCAAGCTCCGGATTTTCGGATGAGACGAGCAACAAGGCAACGCAAACTGAACGCGAGCGACCCGGTTCGTTCTTGTGTACTATCGCAGATGGAGAGGACTACCGCTTCAGCATCTATGACGACGTCAGTCCAATGGACAGTCGATTCCGCAACAGGCCGGAATATCGAGAACTATTCAAAGAGATCTTTACAATACTTAAGAAAGCGGCCGAAAATAAAGACGACGGTGAACAACTTCCCTTACTAGATGACACAACGGCGGGAAAAGTGCCTCCCGTCACTCCGGCGACGGAGGATCCCCCGGGTAACTTCACCGATGACACTCAAAGCATTTTTTCATCTGTCATGTCTGAACAATCCATTCCAGTCTCTGATATCACCGCACCGGAAACGCCCACACTCAAAGAACCAGAGAAGGAGAAACCAGATAAAGTGAAAGTCGAACCGAAAGAAAAGGTAACTCCAGAAACGAGCAAGAAGAAAGCGGTGGGTGATAACAAAGAAAACAAACCAGTGGACGATAGCACCACCGAGATATCAAACGAACAAGAGAAGGAAAAAGAACGAGTGCTCACACCGTTGGTGCGTCAGCCGCTGGAGTACATAGCGGCGACTAGAAAGAAATCCAGACATCGCAACAGGAAACACAGTCAGGACCGACAAGGCGCCGACAGCCCGGTGTATCCTACGCCGCCCAAAGTAACTTATCAGAAATCATCGAACAAGAAGAAACGTGATTATAGGCCTATAGAAGTAAGTCCGCTCGCCAGAGCTGACACCGAATGGAACGGTACCACTTTGCAATTCTACAATAGGAATTTCAACTCCCCAACACCGAGCGTGAGTGGCCGAACTGGTAAGATCTATCAAGGCTGGAACCCCGAGACAGACACGTGGGACATAAAGCAGAGCACCGCCTCGCAGGAAATACACAAACTCAGGAAGTTGGAGCTATCCTACGCCGAGGTGCTCAGAAACGCCGATAAGACTAAAACCAGGCGAAAGAAGCATCAATAA
Protein
MSEEQEQCDSFNSWELNGLNSLDLWDYTVELECLQGTEDLQLAAELGKTLLERNKELETALRQHQNVIEDQAQEIEYLTKQTVALREVNDSRLRIYEQLELSIQDLERANHRLAVDHAADKKHIKSLCSNIDTVEAKCEELQKTVDELNVQLEIYRRRAERKPESEKPKEKEKSEPSQNCKKPEVNSTPKTVAPLPELTKEDEDLLRLSDALRESKVAFAQEQRRVTELEEQLASMVQENNRLHDQLRNWHTREDEPKSMQEEFSILEEVRQGQLCIRCLRGVERDDMSSMLDGDDDDRSAISSVILPPSGQDSPREDVTNKLIKFDNAKEKLLKGTWANKDDGNANPYRELVEKYEALLEVQLSQVKNIKKNKQNITPNSQNQSGPVSLQDELQTSGDYSQFSIKDTDEESGHADETQNNDKQPQKPEPTSRKKIIQTPDFSEAETSSSGFSDETSNKATQTERERPGSFLCTIADGEDYRFSIYDDVSPMDSRFRNRPEYRELFKEIFTILKKAAENKDDGEQLPLLDDTTAGKVPPVTPATEDPPGNFTDDTQSIFSSVMSEQSIPVSDITAPETPTLKEPEKEKPDKVKVEPKEKVTPETSKKKAVGDNKENKPVDDSTTEISNEQEKEKERVLTPLVRQPLEYIAATRKKSRHRNRKHSQDRQGADSPVYPTPPKVTYQKSSNKKKRDYRPIEVSPLARADTEWNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWNPETDTWDIKQSTASQEIHKLRKLELSYAEVLRNADKTKTRRKKHQ

Summary

EMBL
BABH01024583    GDQN01002566    JAT88488.1    KQ459302    KPJ01728.1    KQ461175    + More
KPJ07882.1    AGBW02012562    OWR44816.1    ODYU01006576    SOQ48536.1    GDQN01008993    JAT82061.1    JTDY01000585    KOB76567.1    GEZM01013401    JAV92591.1    GEZM01013402    JAV92590.1    KQ971372    EFA09463.2    KA645837    AFP60466.1    GEDC01003089    JAS34209.1    KA649363    AFP63992.1    NEVH01015817    PNF26679.1    AAZX01003536    JXUM01120237    JXUM01120238    JXUM01120239    JXUM01120240    KQ566373    KXJ70171.1    KQ414813    KOC60530.1    GEDC01009846    JAS27452.1    GEDC01029229    JAS08069.1    GL446556    EFN87632.1    KK107119    QOIP01000009    EZA58532.1    RLU18685.1    KQ766043    OAD53759.1    CH940650    EDW66653.1    KRF82846.1    KB632204    ERL90098.1    CH933806    EDW14067.1    GEZM01013407    GEZM01013405    JAV92586.1    GL888103    EGI67379.1    CH963925    EDW78287.1    CVRI01000036    CRK93157.1    LBMM01001395    KMQ96391.1    CH916373    EDV94953.1    ADTU01013712    KQ978287    KYM95638.1    CH954179    EDV54527.1    KQ976736    KYM76047.1    CH480833    EDW46368.1    CM000361    CM002910    EDX05644.1    KMY91191.1    GL438827    EFN68256.1    KQ983106    KYQ47407.1    CM000158    EDW90966.1    AE014134    AY051930    AAF53912.1    AAK93354.1    AAN11083.1    GALX01003322    JAB65144.1    GL766526    EFZ15066.1    KQ981490    KYN41360.1    ADMH02000093    ETN67839.1    GFDF01010292    JAV03792.1    GFDF01010293    JAV03791.1    JRES01001295    KNC23849.1    JXJN01020334    GDUN01000432    JAN95487.1    GFXV01007600    MBW19405.1    GAKP01017004    JAC41948.1    GAKP01016998    JAC41954.1    GBXI01002127    JAD12165.1    CH477282    EAT44894.1    GBXI01009182    JAD05110.1    GAKP01017003    GAKP01017001    GAKP01017000    JAC41952.1    GFDL01003314    JAV31731.1    KQ979479    KYN21333.1    GFDL01003315    JAV31730.1    GFDL01003285    JAV31760.1    GBHO01045199    GBRD01017358    JAF98404.1    JAG48469.1    CCAG010000991    GBHO01045198    JAF98405.1    GBHO01045202    JAF98401.1    GBHO01042731    GBRD01017357    JAG00873.1    JAG48470.1    GDHC01011949    JAQ06680.1    GDHC01011275    JAQ07354.1   
Interpro
IPR026079   CDR2       

Ontologies

Topology

Length:
785
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00041
outside
1  -  785
 
 

Population Genetic Test Statistics

Pi
252.205605
Theta
164.673397
Tajima's D
0.312697
CLR
0.87109
CSRT
0.457227138643068
Interpretation
Uncertain
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