SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05851  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006964
Annotation
PREDICTED:_ATP-binding_cassette_sub-family_F_member_3_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.249 Nuclear   Reliability : 2.152
 

Sequence

CDS
ATGGCTGGCTGTGGAGACTTCATCAAGAGTCAGTTTCCATTGATCGATGACGAATTAATGAAATATGTGGAAGATATCTTGTGCAACAGCGCTGATGAGTTTGAAGACACAGAGGAAATTTTTGAGGCCGTTGGCGAAGTTTTACAAGGCATATCTGAGAAATCTGAGAAAGACATTAAAGACATATGTGGAAAACTTCTACACATGTTACAACCTGACAAAGGATCGAAGAACAATGGGCCTACGAAAATTTTGGATGCACCAATACATTTAGCTTCAATGACCCAGACTAATTATAATGACACAGATGATCTCAAAAGTATATGGATGCAAACAAGGGATGATAGTTTGAAAGTAGATGCTAGAAAATTAGAGAAAGCCGAAGCTAAATTACAACAGAAGCAACAGAAACAAAAAGAGGTAAAAGCACCAACAGCCACACCACTATTACAAACTGCGACTGCATCACAAGTAACATCGAAAAAAGACAGCAAACTTGAAGCTAAAGGGACAAATAGAACACAAGACATAAGGATAGAAAACTTTGACATAGCGTATGGAGATCGGGTATTATTACAAGGTGCCGACTTGATACTTGCATTTGGACGAAGATACGGCTTAGTCGGAAGAAATGGTCTCGGTAAAACAACTCTCCTACGAATGATATCCAGTAAACAGTTGAAGATTCCATCGCATATAACTATCCTGCATGTGGAGCAGGAGGTTGTAGGAGATGACACCATAGCCCTGCAGAGCGTTCTTGAATGTGATACCATTAGAGAAGGCCTATTAAAAAAAGAAAGGGATATAACTGCTGCTATAAATAATGGCTCCACAGATCCGCAGCTCTCGTCCGAGTTGAGTTCAATATACGTGCAACTACAGAACATAGAGGCGGACAAGGCGCCCGCCCGGGCTTCGGTCATATTGAACGGCTTGGGTTTTACAACGGAGATGCAGGCAAGACCCACCAAGACCTTCTCCGGTGGATGGAGAATGAGATTGGCTTTGGCAAGAGCACTGTTTTCTACCCCTGACCTGTTGTTACTCGACGAACCGACCAACATGTTGGACATAAAGGCGATCATCTGGTTAGAAAACTATCTACAGAAGTGGCCCACTACCCTGTTAGTCGTCTCTCACGACAGAAATTTCTTGGACACCGTACCTACAGATATAATGCATTTACACACCCAAAGGATAGATACGTATAGGGGTAACTACGAACAGTTCCACAAGACAAAGACTGAGAAGCTGAAGAATCAGCAGCGCGAGTACGAGGCGCAGCAGCAGCACCGGGCGCACACGCAGGAGTTCATCGACCGGTTCCGTTACAACGCGAACCGCGCCTCCTCCGTGCAGAGCAAGATCAAAATGCTCGATAAACTTCCAGAACTGAAACCAGTCGAGAAGGAAATAGACGTGGTCCTGCGGTTTCCGGAGACAGAGCCGCTCTCGCCCCCCATATTGCAGCTCAACGAAGTCGGCTTCTACTATTCAAAGGACAAAGTCATATTCACAAATGTTAATCTGGGAGCGACCCTAGAATCTAGGATATGTATTGTGGGCGATAATGGCGCTGGCAAAACAACATTGCTGAAGATCATAATGGGTATACTATCGCCAACGAACGGGATCCGCACCGTGCACAGAGGGCTCAAGTTCGGTTACTTCTCGCAGCACCACGTCGATCAGCTCGAGATGAACGTCAACTCTGTTGAGTTGCTACGGAACAGTTATCCAGGTAAACCGATAGAGGAATACAGGAGGCAGTTGGGTAGTTTCGGAGTGAGCGGCGACCTCGCGTTACAGACGATAGGCAGCTTGTCCGGGGGGCAGAAGTCGAGGGTGGCCTTCGCCAGGATGTGTATGGGAAACCCTAACTTCCTAGTTCTGGACGAGCCCACCAATCATCTGGACATCGAAACGATTGAGGCTCTAGGAAAAGGAATAAACAAATACACTGGTGGCGTGATATTGGTATCTCACGACGAACGGCTAATACGGATGGTCTGCAAGGAGCTTTGGGTCTGCGGGAACGGCTGCGTCACCAGTATAGAAGGAGGATTCGACGAATATCGCAAGATAGTCGAAAGGGAATTAGAAGCACAGAATAAATAG
Protein
MAGCGDFIKSQFPLIDDELMKYVEDILCNSADEFEDTEEIFEAVGEVLQGISEKSEKDIKDICGKLLHMLQPDKGSKNNGPTKILDAPIHLASMTQTNYNDTDDLKSIWMQTRDDSLKVDARKLEKAEAKLQQKQQKQKEVKAPTATPLLQTATASQVTSKKDSKLEAKGTNRTQDIRIENFDIAYGDRVLLQGADLILAFGRRYGLVGRNGLGKTTLLRMISSKQLKIPSHITILHVEQEVVGDDTIALQSVLECDTIREGLLKKERDITAAINNGSTDPQLSSELSSIYVQLQNIEADKAPARASVILNGLGFTTEMQARPTKTFSGGWRMRLALARALFSTPDLLLLDEPTNMLDIKAIIWLENYLQKWPTTLLVVSHDRNFLDTVPTDIMHLHTQRIDTYRGNYEQFHKTKTEKLKNQQREYEAQQQHRAHTQEFIDRFRYNANRASSVQSKIKMLDKLPELKPVEKEIDVVLRFPETEPLSPPILQLNEVGFYYSKDKVIFTNVNLGATLESRICIVGDNGAGKTTLLKIIMGILSPTNGIRTVHRGLKFGYFSQHHVDQLEMNVNSVELLRNSYPGKPIEEYRRQLGSFGVSGDLALQTIGSLSGGQKSRVAFARMCMGNPNFLVLDEPTNHLDIETIEALGKGINKYTGGVILVSHDERLIRMVCKELWVCGNGCVTSIEGGFDEYRKIVERELEAQNK

Summary

EMBL
RSAL01000003    RVE54816.1    KY484786    ASS36028.1    BABH01024582    BABH01024583    + More
KQ459302    KPJ01729.1    KQ971372    EFA09785.1    NEVH01022641    PNF18410.1    KK852510    KDR22359.1    GEZM01021182    JAV89103.1    GEDC01024329    JAS12969.1    GECU01025867    JAS81839.1    GEBQ01014681    JAT25296.1    MH172509    QAA95916.1    ABLF02027509    PNF18408.1    DS234989    EEB09935.1    GFDL01003117    JAV31928.1    CH477658    EAT37669.1    JXUM01033968    JXUM01033969    JXUM01096545    GAPW01000359    KQ564272    KQ561007    JAC13239.1    KXJ72498.1    KXJ80058.1    AAAB01008986    EAA00437.5    APCN01002438    GANO01000882    JAB58989.1    GFXV01005366    MBW17171.1    AXCN02001803    AXCM01001492    ATLV01020330    KE525298    KFB45099.1    UFQS01000062    UFQT01000062    SSW98811.1    SSX19197.1    GDKW01000544    JAI56051.1    GBGD01000641    JAC88248.1    GFTR01007825    JAW08601.1    GECL01003559    JAP02565.1    GGFK01002764    MBW36085.1    APGK01053042    APGK01053043    APGK01053044    KB741219    ENN72448.1    GGFM01001222    MBW21973.1    GGFM01001299    MBW22050.1    GGFM01001284    MBW22035.1    GGMS01014962    MBY84165.1    ADMH02000726    ETN65237.1    GDHC01005074    JAQ13555.1    GAHY01000399    JAA77111.1    GGFJ01002551    MBW51692.1    GBHO01007631    JAG35973.1    KQ414756    KOC61602.1    KQ435090    KZC14576.1    KQ760505    OAD60068.1    GU196316    ACZ26286.1    GL766616    EFZ14875.1    GBYB01005727    GBYB01007335    JAG75494.1    JAG77102.1    KQ435718    KOX78962.1    NNAY01004984    OXU17138.1    AAZX01007436    AAZX01020481    GDAI01002205    JAI15398.1    GEMB01000198    JAS02916.1    GL438428    EFN68967.1    LBMM01000640    KMQ97916.1    KQ981693    KYN37765.1    KQ980439    KYN16050.1    GGMS01013326    MBY82529.1    KQ982762    KYQ51083.1    KQ977294    KYN03962.1    KZ288266    PBC30202.1    GL888406    EGI61443.1    KQ976692    KYM77853.1    ADTU01018847    GL451091    EFN80092.1    KK107105    QOIP01000011    EZA59470.1    RLU16676.1    KY849637    ATY74518.1    GAKP01008856    JAC50096.1    GDHF01026549    GDHF01009483    JAI25765.1    JAI42831.1    CCAG010001380    JXJN01017347    GBYB01008660    JAG78427.1    JRES01001549    KNC22105.1    GBXI01006323    JAD07969.1    CH902618    EDV40864.1    CH940647    EDW69884.1    CH916366    EDV97563.1    KA645181    AFP59810.1    CH933809    EDW18949.1   
Pfam
PF12848   ABC_tran_Xtn        + More
PF00005   ABC_tran
Interpro
IPR017871   ABC_transporter_CS        + More
IPR003439   ABC_transporter-like       
IPR027417   P-loop_NTPase       
IPR003593   AAA+_ATPase       
IPR032781   ABC_tran_Xtn       
SUPFAM
SSF52540   SSF52540       
PDB
5ZXD     E-value=4.46939e-111,     Score=1028

Ontologies

Topology

Length:
706
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00546999999999998
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00015
outside
1  -  706
 
 

Population Genetic Test Statistics

Pi
211.995435
Theta
181.251548
Tajima's D
0.48211
CLR
0.521085
CSRT
0.504774761261937
Interpretation
Uncertain
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