Silkworm Genome Informatics Database

Gene

KWMTBOMO05850

Annotation

PREDICTED:_uncharacterized_protein_LOC106718483_[Papilio_machaon]

Location

Bomo_Chr10(-):12474535-12475820 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.923

CDS

ATGGATGAAAACATTCATAACAATGTAGCGGTCTTAGCTATTCTCGATAGTCAACCTAATTTGTACAAACCAAATATGCCAGTTCCAACATACAATCACAATCAAAACATTAGCCAACAAGAAGAATCGGATGTAAATGAAATGAATAAGCAAAATATCATTTGGACAAAAAATTCTACAATAATGTTACTAAATTTATACGAAACTAAAATACATATGTTGGATAATCCTAAGAAGAAATCAAAGATGTGGATATCTATTGCAGAAGAATTAAAATCATTAAACGTAGAGGTAACTGCAGATCAGGTCAGATGGAAAATAAATGCACTCACAAAAAAATATAAAGACTGCATTGACAATGGACAAGGAGCAGTATCTTTTAAGTATTTTAATGAGATGCACCAAATATTAGGCCGCTACAACGATAATGGTGGAAATTATAGATTGGCTTCTGGTGTTATACAAGAAGACGCAGAGAAAAGTAAAGACCGAAAGAACTTAATGAAAACAACAACTCCTTTTAGAAAATTAAGGGCAGAACGTAGAGCTAAAGTAGAATTAGATAAACAGTGGATAGAATACATTAAAAGACAAGAGGAACAAAAACAAATAAGAGATGAAAGGTATGAGAGGAGTTTGAGATTAAAAGAAGAGGAACTACAATTGAGAAGAAAAGAATTAGAACTGAAACAATCCATAGCTTTAAGAAAGTTACAACTAAGAGAAAACAAACAAGAAGAACTTCTTAAAATAGAACGAGAGAAATGTGCTTTGTTAAGGAAACTAGTGGCAGAACATGAAATTTTGAGACAGTAA

Protein

MDENIHNNVAVLAILDSQPNLYKPNMPVPTYNHNQNISQQEESDVNEMNKQNIIWTKNSTIMLLNLYETKIHMLDNPKKKSKMWISIAEELKSLNVEVTADQVRWKINALTKKYKDCIDNGQGAVSFKYFNEMHQILGRYNDNGGNYRLASGVIQEDAEKSKDRKNLMKTTTPFRKLRAERRAKVELDKQWIEYIKRQEEQKQIRDERYERSLRLKEEELQLRRKELELKQSIALRKLQLRENKQEELLKIEREKCALLRKLVAEHEILRQ

Similarity

Belongs to the E2F/DP family.

Uniprot

A0A2H1WLC1 A0A2A4J448 A0A212ETP2 A0A194Q9N9 A0A194QRB0 A0A2A4J3S2 + More
A0A2H1WL02 S4PGJ5 A0A151ITV1 A0A151J016 A0A151JRH7 A0A0J7KCN2 E9IJ47

Pubmed

22118469 26354079 23622113 21282665

EMBL

ODYU01009378 SOQ53766.1 NWSH01003269 PCG66639.1 AGBW02012562 OWR44814.1 + More
KQ459302 KPJ01730.1 KQ461175 KPJ07879.1 PCG66641.1 SOQ53765.1 GAIX01003637 JAA88923.1 KQ980977 KQ980479 KQ978897 KYN10866.1 KYN15952.1 KYN27623.1 KQ980664 KYN14653.1 KQ978589 KYN29979.1 LBMM01009506 KMQ88077.1 GL763660 EFZ19408.1

Proteomes

UP000218220 UP000007151 UP000053268 UP000053240 UP000078492 UP000036403 + More

Pfam

PF16421 E2F_CC-MB + More
PF02319 E2F_TDP

Interpro

IPR036390   WH_DNA-bd_sf        + More
IPR036388   WH-like_DNA-bd_sf
IPR028312   E2F4
IPR003316   E2F_WHTH_DNA-bd_dom
IPR037241   E2F-DP_heterodim
IPR032198   E2F_CC-MB
IPR015633   E2F
IPR009057   Homeobox-like_sf
IPR001005   SANT/Myb
IPR017877   Myb-like_dom

SUPFAM

SSF46785   SSF46785        + More
SSF144074   SSF144074
SSF46689   SSF46689

Gene 3D

1.10.10.10

ProteinModelPortal

A0A2H1WLC1 A0A2A4J448 A0A212ETP2 A0A194Q9N9 A0A194QRB0 A0A2A4J3S2 + More
A0A2H1WL02 S4PGJ5 A0A151ITV1 A0A151J016 A0A151JRH7 A0A0J7KCN2 E9IJ47

KEGG

101744598 no KO assigned | (RefSeq) uncharacterized LOC101744598

GO

GO:0005634 GO:0003677 GO:0046983 GO:0005667 GO:0003700

PANTHER

PTHR12081:SF42 PTHR12081

Subcellular location

Nucleus

Length:

271

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00764

Exp number, first 60 AAs:

0.00449

Total prob of N-in:

0.08896

outside

1 - 271

Pi

168.328059

Theta

153.478252

Tajima's D

0.268179

CLR

173.495268

CSRT

0.446327683615819

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics