Silkworm Genome Informatics Database

Gene

KWMTBOMO05848

Annotation

PREDICTED:_uncharacterized_protein_LOC101744598_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(-):12464582-12467950 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.885

CDS

ATGGACTTTAGCGGGAATGCTTCTACGTATGTTATTTTAGATGAATCTAAAGACATTGCTATTGATTCAGCAAGTGAAATGGAGAGTAACGACAGAATCAATATTATGAATGAAAGATCTGAGAAACATAGTGCAGTGTGGACAAGTAATGCAACTTCAATACTCTTGAAACTGTATGAATCAAATTTGCAGATGTTAGAAACACCCAAAAAGAAGACTAGAATATGGATGGCTATTTCACAAAATTTAAAACATTTTGACATAGATATGACTGCTGATCAAGTGAGATGGAAAATAAATGCCTTAACAAAGAAATACAAACAATGCATAGATTCGGAATGTAGGCAATATGAAAAATTTAAGTATTTCAAAGAAATGGATAGTATTTACTCACAATATAATGTAGACTGTGATTCCTATTTAATAACAGAACTATTGCACAAAAATAATGAACGAAATAACCAAAATGTGAATAGTTCTCTATCCAAGAAACCTATAGAAAGTAAGGCAGTTATAGAAATGAGGAAAATCAGATTAGCAAACCGCATTGATTCAGAACGAAATCAAAGTAAGGTACAATTAGAAAAACAGTGGCTGGTATACTTAAAAACACAAGAAGACCAAAGGCAATTAAGAGATAGAATGTATGAGAGAAGTCTAAAGTTAAAAGAGGAAGAGTTGGAATTGCGGAAAAGAGAACTAGAGTTAATAGAATCTCTAGAAGGCAAAATAATTGACTTAATAGAAAAAGAACATGATCAAGTTTTACAGCTTGAAAGAGAAAAATGTGATCTAATGAAAGAAAACCTCACAATTTCATAA

Protein

MDFSGNASTYVILDESKDIAIDSASEMESNDRINIMNERSEKHSAVWTSNATSILLKLYESNLQMLETPKKKTRIWMAISQNLKHFDIDMTADQVRWKINALTKKYKQCIDSECRQYEKFKYFKEMDSIYSQYNVDCDSYLITELLHKNNERNNQNVNSSLSKKPIESKAVIEMRKIRLANRIDSERNQSKVQLEKQWLVYLKTQEDQRQLRDRMYERSLKLKEEELELRKRELELIESLEGKIIDLIEKEHDQVLQLEREKCDLMKENLTIS

Similarity

Belongs to the E2F/DP family.

Uniprot

A0A2A4J3S2 A0A2H1WL02 S4PGJ5 A0A2H1WLC1 A0A2A4J448 A0A194Q9N9 + More
A0A194QRB0 A0A212ETP2 A0A151J016 A0A151ITV1 A0A151IKV0 E9J8C8

Pubmed

23622113 26354079 22118469 21282665

EMBL

NWSH01003269 PCG66641.1 ODYU01009378 SOQ53765.1 GAIX01003637 JAA88923.1 + More
SOQ53766.1 PCG66639.1 KQ459302 KPJ01730.1 KQ461175 KPJ07879.1 AGBW02012562 OWR44814.1 KQ980664 KYN14653.1 KQ980977 KQ980479 KQ978897 KYN10866.1 KYN15952.1 KYN27623.1 KQ977162 KYN05232.1 GL768976 EFZ10925.1

Proteomes

UP000218220 UP000053268 UP000053240 UP000007151 UP000078492 UP000078542 + More

Pfam

PF16421 E2F_CC-MB + More
PF02319 E2F_TDP

Interpro

IPR036390   WH_DNA-bd_sf        + More
IPR036388   WH-like_DNA-bd_sf
IPR028312   E2F4
IPR003316   E2F_WHTH_DNA-bd_dom
IPR037241   E2F-DP_heterodim
IPR032198   E2F_CC-MB
IPR015633   E2F

SUPFAM

SSF46785 SSF46785 + More
SSF144074 SSF144074

Gene 3D

1.10.10.10

ProteinModelPortal

A0A2A4J3S2 A0A2H1WL02 S4PGJ5 A0A2H1WLC1 A0A2A4J448 A0A194Q9N9 + More
A0A194QRB0 A0A212ETP2 A0A151J016 A0A151ITV1 A0A151IKV0 E9J8C8

KEGG

101744598 no KO assigned | (RefSeq) uncharacterized LOC101744598

GO

GO:0005634 GO:0003677 GO:0046983 GO:0005667 GO:0003700

PANTHER

PTHR12081:SF42 PTHR12081

Subcellular location

Nucleus

Length:

273

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00401

Exp number, first 60 AAs:

0.00327

Total prob of N-in:

0.03559

outside

1 - 273

Pi

187.36759

Theta

183.2774

Tajima's D

-0.56318

CLR

0.292564

CSRT

0.228338583070846

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics