Gene

KWMTBOMO05839

Pre Gene Modal

BGIBMGA001404

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Bombyx_mori]

Location

Bomo_Chr10(-):11848387-11849490      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.887

CDS

ATGTATAAACTACTTGAGCGAATCACACTTAACCGCATTGCACCAACTATAGAAAAACATATTCCTCAAGAGCAAGCTGGATTCCGTCCAGGACGCAGCTGCAGCGATCAAGTGTTAGCACTGACCACACTCTTGGAGAGGGGATTTAATGAAAACCTCAAGTCGTCAACTGTATTCGTGGACCTAACCGCTGCTTACGACACAGTATGGCGCCAGGGACTGCTGTACAAACTACTCAAGCTGATCCCCTGTATAAAGATCTACAAAGTTATTGAGGACGCTTTTACCAACAGACCATTCCGTGTCTATCTGGGAGACAAGTCTAGCTTATCCAGGGTCCTGAACAACGGTCTCCCGCAGGGCTCAGTCCTCGCACCAACACTCTTCAACGTGTACACCCACGATGTGCCAGAGATGCTCTCCAGGAAATTTCCGTACGCCGACGATCTAGCTCTAGTCGCACAAGGCCGCAGTATAGAGACAACGGAATGTCAGCTTGAAAACGACATGGCCACGCTTGATGACTACTTCATTCGATGGCGCTTGTGTCCAAACGCTTCCAAGACGGAAGTCTGCTGTTTCCACCTAAATAACCGACAGGCTAACAAGAAACCCAACGTCACCTTTAGAGGTTCCACTCTCCCCTTTAACCCCTATCCCAAATATCTGAGTGTCACCCTAGACCTGGTTTCAGAGAAAAACGCCCAATCTGGTGCATGCTTAACCACCTGA

Protein

MYKLLERITLNRIAPTIEKHIPQEQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVWRQGLLYKLLKLIPCIKIYKVIEDAFTNRPFRVYLGDKSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPEMLSRKFPYADDLALVAQGRSIETTECQLENDMATLDDYFIRWRLCPNASKTEVCCFHLNNRQANKKPNVTFRGSTLPFNPYPKYLSVTLDLVSEKNAQSGACLTT

Uniprot

A0A2S2R704   H9ISG9   A0A2S2R976   A0A2S2R253   D7GXJ1   A0A2W5AJS5   + More
A0A2S2PC59   A0A2H8TVX2   X1WVV2   A0A1B6EN51   A0A2S2R0G0   J9L403   J9LNS0   A0A2S2QUG9   J9M1G4   J9KEZ9   A0A1B6KBV5   A0A1B6MIJ0   J9M8I0   A0A1B0D7V9   J9KK83   A0A0A9XVR4   J9L8J9   X1WPT5   A0A2S2Q452   J9KCY3   A0A2A4JQG8   A0A2S2QXK4   A0A2S2QZD0   J9L783   D6WE86   A0A2S2PKC8   X1WLF6   J9KT55   A0A2S2P4T9   W4YNK6   A0A2S2NDH1   J9M4Z0   W4XZG1   J9L8V9   A0A2W1BYF3   A0A3Q2YYG1   A0A3Q3E6Q2   J9L1U8   J9LFU6   W4XC16   A0A3B4VIU4   A0A2T7PMN6   J9LDH1   A0A2S2PR14   A0A0J7MT32   A0A2W1BC05   X1X928   A0A3S1ASJ4   A0A0A9Y6N1   X1WUG2   A0A023EW17   A0A2S2Q823   A0A0A9YHZ1   A0A1Y1NA23   A0A1Q3G5J4   A0A1Q3G5F7   J9KCZ4   J9KKL3   A0A2A4IUM2   V9GZF1   Q07995   A0A2S2N814   J9KIX1   A0A146KRW8   A0A0A9YSX4   X1WNI2   X1WXU3   A0A3Q2YP85   A0A2S2QV02   X1WWC4   J9LC21   A0A0A9YHY8   V5GNF3  

Pubmed

19121390    18362917    19820115    25401762    28756777    24945155    + More
28004739    1327974    8387152    26823975   

EMBL

GGMS01015939    MBY85142.1    BABH01040680    GGMS01017393    MBY86596.1    GGMS01014914    + More
MBY84117.1    GG694201    EFA13393.1    QFNT01000080    PZO93396.1    GGMR01011027    GGMR01014159    MBY23646.1    MBY26778.1    GFXV01006156    MBW17961.1    ABLF02041704    GECZ01030418    JAS39351.1    GGMS01014285    MBY83488.1    ABLF02018295    ABLF02048731    ABLF02008383    ABLF02008387    ABLF02008388    ABLF02008389    ABLF02042376    ABLF02043653    GGMS01011579    MBY80782.1    ABLF02008152    ABLF02025872    ABLF02015153    ABLF02015154    GEBQ01031055    JAT08922.1    GEBQ01004298    JAT35679.1    ABLF02029964    AJVK01031149    ABLF02021396    GBHO01020646    JAG22958.1    ABLF02032924    ABLF02013865    ABLF02013866    ABLF02059691    GGMS01002779    MBY71982.1    ABLF02009760    NWSH01000896    PCG73650.1    GGMS01013298    MBY82501.1    GGMS01013279    MBY82482.1    ABLF02031655    KQ971325    EEZ99467.2    GGMR01017280    MBY29899.1    ABLF02030901    ABLF02059692    ABLF02033421    GGMR01011854    MBY24473.1    AAGJ04013553    GGMR01002645    MBY15264.1    ABLF02007187    ABLF02020407    ABLF02051791    ABLF02064862    AAGJ04063984    ABLF02014865    ABLF02025557    ABLF02067079    KZ149907    PZC78267.1    ABLF02007188    ABLF02035831    ABLF02035833    ABLF02057398    AAGJ04076310    PZQS01000003    PVD34672.1    ABLF02035448    GGMR01019198    MBY31817.1    LBMM01018951    KMQ83660.1    KZ150236    PZC71961.1    ABLF02066620    RQTK01001306    RUS70916.1    GBHO01016303    JAG27301.1    ABLF02016613    GAPW01000276    JAC13322.1    GGMS01004685    MBY73888.1    GBHO01014486    GBHO01014484    GBHO01012635    JAG29118.1    JAG29120.1    JAG30969.1    GEZM01008457    JAV94772.1    GFDL01000006    JAV35039.1    GFDL01000004    JAV35041.1    ABLF02008463    ABLF02029306    ABLF02029314    ABLF02060138    NWSH01007753    PCG62823.1    M95171    AAA29354.1    S59870    AAB26437.2    GGMR01000676    MBY13295.1    ABLF02030646    GDHC01020244    JAP98384.1    GBHO01008295    JAG35309.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02008933    GGMS01012362    MBY81565.1    ABLF02003961    ABLF02059872    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GBHO01014489    GBHO01012641    JAG29115.1    JAG30963.1    GALX01005359    JAB63107.1   

Proteomes

UP000005204    UP000007266    UP000249298    UP000007819    UP000092462    UP000218220    + More
UP000007110    UP000264820    UP000261420    UP000245119    UP000036403    UP000271974   

PRIDE

H9ISG9   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00514   Arm
PF05699   Dimer_Tnp_hAT
PF02892   zf-BED
PF00075   RNase_H
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR011989   ARM-like       
IPR000225   Armadillo       
IPR028435   Plakophilin/d_Catenin       
IPR028446   JAC-1       
IPR016024   ARM-type_fold       
IPR003656   Znf_BED       
IPR008906   HATC_C_dom       
IPR036236   Znf_C2H2_sf       
IPR011010   DNA_brk_join_enz       
IPR013762   Integrase-like_cat_sf       
IPR026630   EPM2A-int_1       
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       

SUPFAM

SSF56219   SSF56219        + More
SSF48371   SSF48371       
SSF57667   SSF57667       
SSF56349   SSF56349       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     1.25.10.10     1.10.443.10     3.30.420.10    

ProteinModelPortal

A0A2S2R704   H9ISG9   A0A2S2R976   A0A2S2R253   D7GXJ1   A0A2W5AJS5   + More
A0A2S2PC59   A0A2H8TVX2   X1WVV2   A0A1B6EN51   A0A2S2R0G0   J9L403   J9LNS0   A0A2S2QUG9   J9M1G4   J9KEZ9   A0A1B6KBV5   A0A1B6MIJ0   J9M8I0   A0A1B0D7V9   J9KK83   A0A0A9XVR4   J9L8J9   X1WPT5   A0A2S2Q452   J9KCY3   A0A2A4JQG8   A0A2S2QXK4   A0A2S2QZD0   J9L783   D6WE86   A0A2S2PKC8   X1WLF6   J9KT55   A0A2S2P4T9   W4YNK6   A0A2S2NDH1   J9M4Z0   W4XZG1   J9L8V9   A0A2W1BYF3   A0A3Q2YYG1   A0A3Q3E6Q2   J9L1U8   J9LFU6   W4XC16   A0A3B4VIU4   A0A2T7PMN6   J9LDH1   A0A2S2PR14   A0A0J7MT32   A0A2W1BC05   X1X928   A0A3S1ASJ4   A0A0A9Y6N1   X1WUG2   A0A023EW17   A0A2S2Q823   A0A0A9YHZ1   A0A1Y1NA23   A0A1Q3G5J4   A0A1Q3G5F7   J9KCZ4   J9KKL3   A0A2A4IUM2   V9GZF1   Q07995   A0A2S2N814   J9KIX1   A0A146KRW8   A0A0A9YSX4   X1WNI2   X1WXU3   A0A3Q2YP85   A0A2S2QV02   X1WWC4   J9LC21   A0A0A9YHY8   V5GNF3  

PDB

6AR3     E-value=6.49755e-05,     Score=108

KEGG

101737659    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0005913   GO:0010172   GO:0032956   GO:0045296   GO:0098609   GO:0046983   GO:0003677   GO:0006310   GO:0015074   GO:0032053   GO:0010457   GO:0005814   GO:0036064   GO:0007099  

PANTHER

PTHR10372:SF27   PTHR10372   PTHR45913  

Length:

243

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01054

Exp number, first 60 AAs:

0.0005

Total prob of N-in:

0.03909

outside

1  -  243

 

 

Pi

132.879621

Theta

54.374501

Tajima's D

1.11363

CLR

11.262216

CSRT

0.694115294235288

Interpretation

Uncertain