SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05835
Pre Gene Modal
BGIBMGA006904
Annotation
polycomb_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.731
 

Sequence

CDS
ATGGAGCTAGGCGACAGCGTGTTCGCCGCTGAACGCATCATGAAAAGGAGAATTAGAAAGAACAAGGTGGAGTACTACGTGAAATGGAAAGGGTGGAAACCGAAGCACAACACGTGGGAACCGGAGGAGAACATTTTGGATCCTCGGCTCATACAGAGTTTCATGAAAGGCGAGGAGGTCCGGCGCCAGGGCCGGAAACGCGAGCGGGAACACTCGTCCGTGGAGCGCGCGCGCAGCGGCTCCGAGGAACGCCACCCTCCGCCCGGGAAGCGCAAAGCTGAAGTCCTCTCTAGGGAGTCGGGCAAGATCGGCGTGACCATCACTATGAGTCCGCCCACAAAGCGCCACGAATCTAAGTTGAACGGCACAAGAACGCCCCAGGTCAGTCTGCCGCCCCCACCGGCCGCAGCACCAGGCGGTGCCGCTGTTCCTACTTCTCCCGCCGCTGAGGCCGCCGCACCAAGATCGGGGCCGCGGCGAGCGCCTCACTCACCCGAAGAAGCAGACACGCACACGTCTCCAGAGCGAGAGAGGCGCACTGAAACACAACCGACAGCGACAGCGCCTGCCGAGCCCAAGGGCGCTCGTCCTGCGCCTCAAGCGCCACAACCCGAAGACGAAGATTCATGGGGAGAAGCACCAGTGGCGGTGCCCGCGCCGGCATCGGCTCCGGCTGCCAAGCGAGGTGCTGCATACTGGATGGCACGATCACCGGTAGCAGATCAAATTTTCATAACGGACGTGACAGTCAACCTACAGACGGTTACGATCACGGAATGTCGCACGGAGAAGGGCTTCTTCAGGTCTCGCGAGCCCCGACCGCTCGACGCCACATAA
Protein
MELGDSVFAAERIMKRRIRKNKVEYYVKWKGWKPKHNTWEPEENILDPRLIQSFMKGEEVRRQGRKREREHSSVERARSGSEERHPPPGKRKAEVLSRESGKIGVTITMSPPTKRHESKLNGTRTPQVSLPPPPAAAPGGAAVPTSPAAEAAAPRSGPRRAPHSPEEADTHTSPERERRTETQPTATAPAEPKGARPAPQAPQPEDEDSWGEAPVAVPAPASAPAAKRGAAYWMARSPVADQIFITDVTVNLQTVTITECRTEKGFFRSREPRPLDAT

Summary

Pfam
PF17218   CBX7_C        + More
PF00385   Chromo
Interpro
IPR023779   Chromodomain_CS        + More
IPR023780   Chromo_domain       
IPR017984   Chromo_dom_subgr       
IPR016197   Chromo-like_dom_sf       
IPR033773   CBX7_C       
IPR000953   Chromo/chromo_shadow_dom       
SUPFAM
SSF54160   SSF54160       
PDB
5EPK     E-value=1.70609e-14,     Score=191

Ontologies

Topology

Subcellular location
Nucleus  
Length:
278
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00104
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00815
outside
1  -  278
 
 

Population Genetic Test Statistics

Pi
301.510875
Theta
190.367393
Tajima's D
1.110922
CLR
0.269353
CSRT
0.689115544222789
Interpretation
Uncertain
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