SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05833  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006952
Annotation
PREDICTED:_TBC1_domain_family_member_9_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.523
 

Sequence

CDS
ATGTGGGTGAAACCTCAAGAAATATATTTGAAAACCGCACTATGGGATACGGAAGAAACATCTTTGTATTTTGTTTTACAATGTAGAAAAGGACATGGTAAATCAAAAGGGCTCTCCTCGCTTCTTGTTGGTACTTTAGACAGCGTCCGAGACACCAAACCTGCGCCCTACAGGATATTACATCAAACTCCAAACTCCGAAATCTATTATGTAATAGCAACTGCATTGACGGAACAACAGATCCGTCAAGATTGGCAGTGGCTTATTGACAATGTTTGTTCAACACTCCATTCCTTTGACACCGAGGAAGAAGTCACAGAATTTGTATGCTGCAAAATTAACTCTGTTATGGCAACTGAACAAGAAAATATAACTGAAGATGAAGACACAATAACTTACAAAAATGTTGATTATGAATTTCACCAAAGATTTAATATGCCCAAAGATGAAAAACTTGTGTGCTATTATTCATGCAGTTATTGGAAGGGAAAAATGCCACGTCAGGGATGGATGTATCTGTCTGTCCATTACATGTGTTTCTATTCATACATTATCGGTCGGAAAACAGCTGTTAAGATACGTTGGGCTGATGTGACAGAGCTCGCAAAAACACACAGCCTAATATTTCCAGACTCCATTAAAGTGGTGACCAGGGATGCTGAGCATTATTTCACTATGTTTTTGAAGAAGAATGAGACTTTTGCATTAATGCAGCAGCTCGCCAATATTGCTATGAAACAGCTTATAGATGATAAATCTGGAACCTTCAACATTGACAAAGATTTATTAACAAAACTGAGCAAAAATGTGCCAAAGAAAGCATCTTTTTTGAAACGTGACCTAGATGCTAGAAAGCAATCAAATCTGTACACACTAAGGTTCCGATTGCCTCAAACAGAAAAGCTTGATGGAACTGAAGCATGTACTCTCTGGACACCATACAATAAAAAACACAATTGGGGAAGACTATATTTGTCTCAGAATTTTATATGTTTTGACAGCAGGGTGCCAAATTTGGTACGACTGACTATCCCACTGCGCAACGTACATCAAGTGGAACGCGCTGACTCCGGCGGCACTGGAAGCTCAGGAGATTCTGGTAGCATCCTCATCACGACCGCCCACCACACCAGCTTCCTTTTCGGAAACATATCCGACAGGGATTTTCTTGTGCACAAAATCTCTGAGCTACTGGCAAAATTACCAAAGGAGAAGGCGATACGGGCAATGGCGAAACTCGAAAATGACAGTCACTGGACTCCGCAGCCCCCTTTGATGACGCTATTCAAGACTCATCAAACTTCACCGATTAAACAAATGCAACAGAAAAAGGAGAAAAGATGGGAAGACCACATGGCTGAAGTCGGTCGAGGGGTGAGCATGTACCAAACGACAGACGGTAGCGAATTAGTCGTCAGCGGCCTTCCTGAGTCTCTTCGTGGAGAACTATGGAGCGTGTTCTCGGGTTCTATACTGCAGAAGGCACAGAACAAAGGACTGTACGAAAGACTGGTTAATGAGGCTCTTTCATCGAAGAATCAGGCGAACGATGAAATAGAACGAGATTTGCACAGATCATTGCCGGAACATAGGGCATTTCAAAACGATATCGGAATATCGGCATTACGTCGGGTTCTATGTGCGTACGCTCGCAAGAATCCCACAATAGGATATTGTCAGGCGATGAACATCGTGGCGTCTGTACTACTCATATATTGTCCGGAAGAGCAGGCGTTCTGGTTGTTAGCAACAATATGCGAGACTTTGTTGCCAGATTACTACAATACCAGGGTAGTCGGAGCTCTGGTCGATCAAGGAGTCCTTGAAGAACTAACAGAAGCTCATCTGCCGGAATTACACGCGAAGCTAGACGAACTGGGAATGATGAAAATGATCAGTCTGTCTTGGTTCCTGACTCTGTTCATCAGCGTGATGCCGTACGAGTGCGCGGTCAACGTTATGGACTGTTTCTTTTATGATGGCGCTAAAGTCATATTCCAGGTAACGCTCACGATTCTCGACATCAATCACGAGAAGCTACTCAAATGCACCGAAGATGGACAGGCTATGCAGGTTTTAAACGAGTATCTAGAAGGCATTTACAACGAGGAAGCAATGGCGCTGTCCACAGAACCACGAACTGAGGCAAAAACAATAAAGATTCAAGATCTCATTTACCGTACTTACCGTTCGTACGGCAGCACCGTTACCAGCGAACATATAGAGCACTTGCGACTGAAACACCGCCTGCGGGTAGTCAAACAACTAGAGGACAGCCTGGAGAGGAATACATTGAGGGCTTTACAACAAGACAAGCTGCTGGAGCCTAATGAATTGCATGATCTCTTAAGCATAATACGCGAAGAGTTATTCTGGGCGAAGCGTGTACCTTGCGAAAGATTGGAAGCTCCTTACGAAGCTTACCGACTCGATTACACCCAATTCAAAAGTTTATTCACTGCTCTATCGCCTTGGGCCAAAGGGGATTACGCCGAAGCTATTACTGCTAGAATGTTTAAGTTAATGGACCACGACGACGACGGGTTCGTGAGCGCTCGCGGCCTGAGCGTGGCCATAGGGCTGAGCACCCGCGGCGACGCCCAGCGCCGGCTGCGCGCCCTGTACTGCGCGCACGCGCCGCCGCTGCTCACCCACCAGGACCTCAGGCCCACGCACTTCACGGAAACCGGGGAAGAGGTCGCCGCCGACGCCATCTCCTTCTTCGACGACATAGAAAATCCACCAACGCCAGAACCATTAGCGCTGTCAGGTCTGCAGCGATCGATAAGTGAAGTGTGCGGTGAAGGTAGCAACATGGATAAGTCCACTGACAGCACCACAAGTCAAACCGGCTCGCCATGGGAGGGCTACACGTCGGAGTCGGTCCGTGCGTGCGGACTAGCCGGACTGGCGGGGTCGTCGCCCCCGAGCCCGGGCCCCGCCCCGCCCCCTCCCGCGCCGCCGCTCCCCCGCGCGCACTTCCTGCAGCTCCTCGCCGCGCTGCACGACCTCACGCAGCACAGCGCGCCGCACTACGAAGCCGTCGTCTTGGCAGGCACCTTGCTGTTACAACTCGGCGAGTTAAACCACCGGAGGCCGGATCTGGAGCGAGAAATGTCCCAGGACAGTCTGTACCTGGCGGCCGCGGCGAAGCAGTCGTCCACTTCCACGATGGATCCAAACGGCAACACCCCAGACGAACAAGAAATTCGAAGGACGCAGTCTCAAGAGTCTGAAAGCGTTTGGTCGATAACGTTAGAACAATTCCTGGCCACAATGCTTCTGCAGCCACCCCTAGAAGAATACTTCAACGAGAAGATATCTCTGGTGCCGCAACTGGAAGCGTTGAAGCAAAGAGATCGGCTCCACTCCGTCTCGTAG
Protein
MWVKPQEIYLKTALWDTEETSLYFVLQCRKGHGKSKGLSSLLVGTLDSVRDTKPAPYRILHQTPNSEIYYVIATALTEQQIRQDWQWLIDNVCSTLHSFDTEEEVTEFVCCKINSVMATEQENITEDEDTITYKNVDYEFHQRFNMPKDEKLVCYYSCSYWKGKMPRQGWMYLSVHYMCFYSYIIGRKTAVKIRWADVTELAKTHSLIFPDSIKVVTRDAEHYFTMFLKKNETFALMQQLANIAMKQLIDDKSGTFNIDKDLLTKLSKNVPKKASFLKRDLDARKQSNLYTLRFRLPQTEKLDGTEACTLWTPYNKKHNWGRLYLSQNFICFDSRVPNLVRLTIPLRNVHQVERADSGGTGSSGDSGSILITTAHHTSFLFGNISDRDFLVHKISELLAKLPKEKAIRAMAKLENDSHWTPQPPLMTLFKTHQTSPIKQMQQKKEKRWEDHMAEVGRGVSMYQTTDGSELVVSGLPESLRGELWSVFSGSILQKAQNKGLYERLVNEALSSKNQANDEIERDLHRSLPEHRAFQNDIGISALRRVLCAYARKNPTIGYCQAMNIVASVLLIYCPEEQAFWLLATICETLLPDYYNTRVVGALVDQGVLEELTEAHLPELHAKLDELGMMKMISLSWFLTLFISVMPYECAVNVMDCFFYDGAKVIFQVTLTILDINHEKLLKCTEDGQAMQVLNEYLEGIYNEEAMALSTEPRTEAKTIKIQDLIYRTYRSYGSTVTSEHIEHLRLKHRLRVVKQLEDSLERNTLRALQQDKLLEPNELHDLLSIIREELFWAKRVPCERLEAPYEAYRLDYTQFKSLFTALSPWAKGDYAEAITARMFKLMDHDDDGFVSARGLSVAIGLSTRGDAQRRLRALYCAHAPPLLTHQDLRPTHFTETGEEVAADAISFFDDIENPPTPEPLALSGLQRSISEVCGEGSNMDKSTDSTTSQTGSPWEGYTSESVRACGLAGLAGSSPPSPGPAPPPPAPPLPRAHFLQLLAALHDLTQHSAPHYEAVVLAGTLLLQLGELNHRRPDLEREMSQDSLYLAAAAKQSSTSTMDPNGNTPDEQEIRRTQSQESESVWSITLEQFLATMLLQPPLEEYFNEKISLVPQLEALKQRDRLHSVS

Summary

EMBL
BABH01024523    BABH01024524    KQ459302    KPJ01752.1    KQ461175    KPJ07862.1    + More
GDQN01010089    JAT80965.1    AGBW02014723    OWR41127.1    NWSH01005395    PCG64249.1    NWSH01007754    PCG62820.1    ODYU01010888    SOQ56274.1    ADTU01011884    PCG64250.1    NEVH01020353    PNF21369.1    GL452292    EFN77590.1    GBYB01010011    GBYB01010013    JAG79778.1    JAG79780.1    KQ435922    KOX68432.1    KQ414582    KOC70864.1    PNF21368.1    KQ434998    KZC13338.1    KQ976396    KYM92930.1    GEZM01087290    JAV58793.1    NNAY01003342    OXU19592.1    GL438684    EFN68621.1    QOIP01000008    RLU19823.1    KQ982934    KYQ49185.1    GEDC01011289    GEDC01005799    JAS26009.1    JAS31499.1    GEDC01029812    GEDC01012500    JAS07486.1    JAS24798.1    KZ288198    PBC33685.1    GL764129    EFZ18494.1    KQ978076    KYM97244.1    GBBI01003455    JAC15257.1    GBGD01000221    JAC88668.1    KQ981727    KYN37025.1    ACPB03021630    ACPB03021631    JH432011    GFAA01002157    JAU01278.1    GEFH01003251    JAP65330.1    GFPF01013403    MAA24549.1    GGLE01003844    MBY07970.1    GACK01001106    JAA63928.1    GEFM01004348    JAP71448.1    DS235068    EEB11252.1    GACK01001105    JAA63929.1    GEGO01001799    JAR93605.1    LNIX01000003    OXA58223.1    AMQN01002354    KB308962    ELT95953.1    KB631294    KB632328    ERL84216.1    ERL92540.1    ABLF02024336    ABLF02024337    GFXV01007058    MBW18863.1    GFAC01000400    JAT98788.1    GG666548    EEN57011.1    GGMS01016953    MBY86156.1    GECU01027990    JAS79716.1    NEDP02002474    OWF50762.1    HACG01025149    CEK72014.1    LJIJ01000549    ODM96342.1    KB201304    ESO97799.1    AHAT01005408    KK107088    EZA59763.1    GFDF01006402    JAV07682.1    GFDF01006403    JAV07681.1    GBEX01003378    JAI11182.1    PZQS01000003    PVD33410.1    JARO02001073    KPP76562.1    HADX01001351    SBP23583.1    CU896540    HADW01001341    SBP02741.1    JXUM01065830    KQ562367    KXJ76052.1    AXCN02000557    AXCP01008284    AXCP01008285    AEMK02000012    DQIR01021783    HCZ77258.1    JXLN01013336    KPM09271.1    HAEB01011202    SBQ57729.1    GFDL01002658    JAV32387.1    HAEG01001582    SBR65563.1   
Pfam
PF00566   RabGAP-TBC        + More
PF02893   GRAM
PF03969   AFG1_ATPase
PF00929   RNase_T
PF00787   PX
PF10456   BAR_3_WASP_bdg
PF14604   SH3_9
Interpro
IPR000195   Rab-GTPase-TBC_dom        + More
IPR011993   PH-like_dom_sf       
IPR036014   TCB1D9/TCB1D9B_PH-GRAM1       
IPR036017   TCB1D9/TCB1D9B_PH-GRAM2       
IPR035969   Rab-GTPase_TBC_sf       
IPR004182   GRAM       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR005654   ATPase_AFG1-like       
IPR027417   P-loop_NTPase       
IPR034922   REX1-like_exo       
IPR012337   RNaseH-like_sf       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR036397   RNaseH_sf       
IPR001751   S100/CaBP-9k_CS       
IPR001683   Phox       
IPR001452   SH3_domain       
IPR027267   AH/BAR_dom_sf       
IPR036871   PX_dom_sf       
IPR019497   Sorting_nexin_WASP-bd-dom       
IPR036028   SH3-like_dom_sf       
SUPFAM
SSF47923   SSF47923        + More
SSF47473   SSF47473       
SSF52540   SSF52540       
SSF53098   SSF53098       
SSF64268   SSF64268       
SSF50044   SSF50044       
PDB
4P17     E-value=1.88007e-27,     Score=309

Ontologies

Topology

Length:
1126
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.88248
Exp number, first 60 AAs:
0.00015
Total prob of N-in:
0.04753
outside
1  -  1126
 
 

Population Genetic Test Statistics

Pi
179.766318
Theta
175.227682
Tajima's D
0.657141
CLR
0
CSRT
0.552322383880806
Interpretation
Uncertain
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