Gene

KWMTBOMO05832  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006951

Annotation

hypothetical_protein_KGM_17238_[Danaus_plexippus]

Location

Bomo_Chr10(+):11507963-11513514      View in EpiBrowser

Full name

Protein rogdi      

Location in the cell

Cytoplasmic   Reliability : 1.962 Nuclear   Reliability : 1.37

CDS

ATGGGTGACAACGAAAAAGAAGAAGCAGCTAATTTAAAAGAAGAGTTTGAATGGGTTCTTCGTGAAGAGGTTCATGCTATATTACACCAATTACACACAGTTTTAGTTGAATGTGCTCACAGGTTTCCTGTACCATTGTATGGTAATGAAGGCCAAAAACAGGATAAATTTATTTTGACATCACAACCTGAGCAGTTAAAGTGTATTGTGACCCTCACAGGAGATAGCATAACTCATGCAGATATTAGTTTCAAGGTCCTCCGTCAAATGCACACAATATGCCGTACCTCAATCAATCAAGATGGACCATGGAAACTTCAGCAGATACAAGATGCTGCAAACCATCTCCAACAAGCTATAGGCTATATTGATAATGTGGACAAACATTATGTTTTTCGATCATCAGAAGAAGTATTACATATAATTCAATGTCTTATTGGCTCTTTACAAAGAGCTCGGACTGCCTTAGTATTACCCAAAAAAAAAGCAATTGATGAGCTCATGAAGAGTCGAAATATGAAAGCTCTTTCACCAAATTTGCCTGAAGATTTAGCGATATCATTTTACATACAATCTCATAAATTGATATTTGTGGCGTACCATATTAGTTTTGTACATGGTACCATGAGGATTGATTCATGTCAAGCCGACTGTGCAGTGCCTTGGCTAAGTGATGTACTATTTATGCTGACAGCTGCATTACACATGTGTCAGCAATTAAAAGATAAGTTATGTGTTTTCTCGCAATACAAAGACTTCACAGTGGGATCAAGATCTGCCTCGATGGTGTTTAACTGA

Protein

MGDNEKEEAANLKEEFEWVLREEVHAILHQLHTVLVECAHRFPVPLYGNEGQKQDKFILTSQPEQLKCIVTLTGDSITHADISFKVLRQMHTICRTSINQDGPWKLQQIQDAANHLQQAIGYIDNVDKHYVFRSSEEVLHIIQCLIGSLQRARTALVLPKKKAIDELMKSRNMKALSPNLPEDLAISFYIQSHKLIFVAYHISFVHGTMRIDSCQADCAVPWLSDVLFMLTAALHMCQQLKDKLCVFSQYKDFTVGSRSASMVFN

Similarity

Belongs to the rogdi family.

Keywords

Alternative splicing   Complete proteome   Nucleus   Reference proteome  

Feature

chain  Protein rogdi
splice variant  In isoform 2.

Uniprot

A0A2H1WZK2   A0A1E1WJG2   A0A194QWB6   A0A3S2MA04   H9JBQ6   A0A194Q8A0   + More
A0A212EI13   A0A0N0PFE8   A0A182LK91   Q7PPB1   A0A182SBB5   A0A182WBL7   A0A182M2K3   A0A182K3E2   A0A182I4N1   A0A182X4N3   A7UUH2   A0A2M3ZIP4   A0A2M4BR16   A0A182VI07   A0A2M4BQ80   A0A2M4AU34   A0A2M4AU86   A0A182RDK5   A0A182NKJ0   A0A182J162   A0A182QHQ0   A0A1J1I7C2   A0A1Q3F0T3   A0A1Q3F0E6   A0A1L8DAX0   A0A1L8DAY3   W5JU02   A0A1L8DAY1   A0A182FD19   U5EZG1   A0A2J7PW06   A0A2J7PVZ9   A0A2J7PW07   B0W6V9   A0A182U792   A0A182PK11   A0A336MQA1   A0A182Y2F6   A0A1B0CKA7   A0A0K8TM40   A0A1L8EI54   A0A1S4EWQ3   T1PIP1   A0A1I8MLX6   Q17NC8   A0A067QN59   A0A1A9WFK1   A0A182GKD3   A0A1A9VHJ6   D3TQA4   A0A0A1X7R7   A0A1B0BFQ6   A0A2P8XQG1   A0A0K8WFR7   A0A1I8Q7G2   A0A1Y1LKY2   D6WZP6   B3M5H8   A0A1I8Q7J4   A0A1B6J284   A0A1B6GYE5   Q9VVE2   B4N3A0   B4PJY4   B3NDD3   B4HKA9   B4QNE9   Q9VVE2-2   A0A3B0KG16   A0A1W4W4K7   W8C4K8   E2BDB6   K7ITL6   B4LDT3   A0A232EZA2   A0A1L8E791   A0A1L8E6V7   B4KYE9   B4IZD7   A0A0Q9WV67   A0A0M3QX05   E9ILD5   A0A026VZ51   A0A195DYH2   F4WZL3   A0A195B7V1   A0A195FFF2   A0A158NGR6   A0A151IFD6   E1ZV53   A0A151XAC4   A0A0L0BWY9   A0A2A3EKA0   A0A087ZVT6  

Pubmed

26354079    19121390    22118469    20966253    12364791    14747013    + More
17210077    20920257    23761445    25244985    26369729    17510324    25315136    24845553    26483478    20353571    25830018    29403074    28004739    18362917    19820115    17994087    10731132    12537572    12537569    17550304    22936249    24495485    20798317    20075255    28648823    21282665    24508170    30249741    21719571    21347285    26108605   

EMBL

ODYU01012206    SOQ58386.1    GDQN01004053    JAT87001.1    KQ461175    KPJ07861.1    + More
RSAL01000003    RVE54836.1    BABH01024523    KQ459302    KPJ01753.1    AGBW02014723    OWR41126.1    LADI01014852    KPJ20792.1    AAAB01008960    EAA10769.4    AXCM01003844    APCN01002332    EDO63950.1    GGFM01007663    MBW28414.1    GGFJ01006321    MBW55462.1    GGFJ01005940    MBW55081.1    GGFK01010962    MBW44283.1    GGFK01010961    MBW44282.1    AXCN02000396    CVRI01000043    CRK96181.1    GFDL01013884    JAV21161.1    GFDL01014019    JAV21026.1    GFDF01010463    JAV03621.1    GFDF01010466    JAV03618.1    ADMH02000378    ETN66773.1    GFDF01010465    JAV03619.1    GANO01000859    JAB59012.1    NEVH01020940    PNF20513.1    PNF20512.1    PNF20514.1    DS231850    EDS37105.1    UFQS01002022    UFQT01002022    SSX12995.1    SSX32436.1    AJWK01015949    AJWK01015950    AJWK01015951    GDAI01002179    JAI15424.1    GFDG01000464    JAV18335.1    KA647803    AFP62432.1    CH477200    EAT48207.1    KK853218    KDR09743.1    JXUM01013314    JXUM01013315    KQ560374    KXJ82730.1    EZ423606    ADD19882.1    GBXI01007105    JAD07187.1    JXJN01013628    PYGN01001530    PSN34247.1    GDHF01002303    JAI50011.1    GEZM01054669    JAV73498.1    KQ971372    EFA09669.1    CH902618    EDV39588.1    GECU01021759    GECU01014407    GECU01003661    JAS85947.1    JAS93299.1    JAT04046.1    GECZ01002326    JAS67443.1    AE014296    AY060379    BT023927    CH964062    EDW78839.1    CM000159    EDW94753.1    CH954178    EDV51995.1    CH480815    EDW41850.1    CM000363    CM002912    EDX10819.1    KMZ00191.1    OUUW01000009    SPP85269.1    GAMC01005444    JAC01112.1    GL447585    EFN86344.1    CH940647    EDW68956.1    NNAY01001503    OXU23772.1    GFDG01004226    JAV14573.1    GFDG01004328    JAV14471.1    CH933809    EDW17728.1    CH916366    EDV96692.1    KRF84101.1    CP012525    ALC45093.1    GL764074    EFZ18615.1    KK107681    QOIP01000006    EZA48109.1    RLU21512.1    KQ980107    KYN17654.1    GL888480    EGI60288.1    KQ976574    KYM80274.1    KQ981625    KYN39086.1    ADTU01015173    KQ977793    KYM99663.1    GL434441    EFN74912.1    KQ982339    KYQ57317.1    JRES01001303    KNC23754.1    KZ288219    PBC32233.1   

Proteomes

UP000053240    UP000283053    UP000005204    UP000053268    UP000007151    UP000075882    + More
UP000007062    UP000075901    UP000075920    UP000075883    UP000075881    UP000075840    UP000076407    UP000075903    UP000075900    UP000075884    UP000075880    UP000075886    UP000183832    UP000000673    UP000069272    UP000235965    UP000002320    UP000075902    UP000075885    UP000076408    UP000092461    UP000095301    UP000008820    UP000027135    UP000091820    UP000069940    UP000249989    UP000078200    UP000092460    UP000245037    UP000095300    UP000007266    UP000007801    UP000000803    UP000007798    UP000002282    UP000008711    UP000001292    UP000000304    UP000268350    UP000192221    UP000008237    UP000002358    UP000008792    UP000215335    UP000009192    UP000001070    UP000092553    UP000053097    UP000279307    UP000078492    UP000007755    UP000078540    UP000078541    UP000005205    UP000078542    UP000000311    UP000075809    UP000037069    UP000242457    UP000005203   

PRIDE

H9JBQ6    Q9VVE2    A0A087ZVT6   

Pfam

PF10259   Rogdi_lz        + More
PF02194   PXA
PF00787   PX
PF08628   Nexin_C
PF00498   FHA
PF00250   Forkhead
PF13499   EF-hand_7

Interpro

IPR028241   RAVE2/Rogdi        + More
IPR001683   Phox       
IPR036871   PX_dom_sf       
IPR003114   Phox_assoc       
IPR013937   Sorting_nexin_C       
IPR018122   TF_fork_head_CS_1       
IPR036390   WH_DNA-bd_sf       
IPR000253   FHA_dom       
IPR036388   WH-like_DNA-bd_sf       
IPR008984   SMAD_FHA_dom_sf       
IPR001766   Fork_head_dom       
IPR030456   TF_fork_head_CS_2       
IPR018247   EF_Hand_1_Ca_BS       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       

SUPFAM

SSF64268   SSF64268        + More
SSF46785   SSF46785       
SSF49879   SSF49879       
SSF47473   SSF47473       

Gene 3D

3.30.1520.10     1.10.10.10    

CDD

cd00060  FHA
cd00059  FH
cd00051  EFh

ProteinModelPortal

A0A2H1WZK2   A0A1E1WJG2   A0A194QWB6   A0A3S2MA04   H9JBQ6   A0A194Q8A0   + More
A0A212EI13   A0A0N0PFE8   A0A182LK91   Q7PPB1   A0A182SBB5   A0A182WBL7   A0A182M2K3   A0A182K3E2   A0A182I4N1   A0A182X4N3   A7UUH2   A0A2M3ZIP4   A0A2M4BR16   A0A182VI07   A0A2M4BQ80   A0A2M4AU34   A0A2M4AU86   A0A182RDK5   A0A182NKJ0   A0A182J162   A0A182QHQ0   A0A1J1I7C2   A0A1Q3F0T3   A0A1Q3F0E6   A0A1L8DAX0   A0A1L8DAY3   W5JU02   A0A1L8DAY1   A0A182FD19   U5EZG1   A0A2J7PW06   A0A2J7PVZ9   A0A2J7PW07   B0W6V9   A0A182U792   A0A182PK11   A0A336MQA1   A0A182Y2F6   A0A1B0CKA7   A0A0K8TM40   A0A1L8EI54   A0A1S4EWQ3   T1PIP1   A0A1I8MLX6   Q17NC8   A0A067QN59   A0A1A9WFK1   A0A182GKD3   A0A1A9VHJ6   D3TQA4   A0A0A1X7R7   A0A1B0BFQ6   A0A2P8XQG1   A0A0K8WFR7   A0A1I8Q7G2   A0A1Y1LKY2   D6WZP6   B3M5H8   A0A1I8Q7J4   A0A1B6J284   A0A1B6GYE5   Q9VVE2   B4N3A0   B4PJY4   B3NDD3   B4HKA9   B4QNE9   Q9VVE2-2   A0A3B0KG16   A0A1W4W4K7   W8C4K8   E2BDB6   K7ITL6   B4LDT3   A0A232EZA2   A0A1L8E791   A0A1L8E6V7   B4KYE9   B4IZD7   A0A0Q9WV67   A0A0M3QX05   E9ILD5   A0A026VZ51   A0A195DYH2   F4WZL3   A0A195B7V1   A0A195FFF2   A0A158NGR6   A0A151IFD6   E1ZV53   A0A151XAC4   A0A0L0BWY9   A0A2A3EKA0   A0A087ZVT6  

PDB

5XQI     E-value=4.34975e-41,     Score=420

KEGG

101743104    no KO assigned | (RefSeq) protein rogdi

GO

GO:0035091   GO:0007035   GO:0043291   GO:0032502   GO:0005634   GO:0016021   GO:0003700   GO:0043565   GO:0005635   GO:0048149   GO:0005509  

PANTHER

PTHR13618  

Subcellular location

Nucleus  
Nucleus envelope  

Length:

265

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.39201

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.06593

outside

1  -  265

 

 

Pi

202.827719

Theta

195.043596

Tajima's D

0.499121

CLR

0

CSRT

0.514524273786311

Interpretation

Uncertain