Gene

KWMTBOMO05829

Pre Gene Modal

BGIBMGA006950

Annotation

hypothetical_protein_KGM_05194_[Danaus_plexippus]

Location

Bomo_Chr10(+):11369851-11374611      View in EpiBrowser

Full name

RNA-binding protein Musashi homolog Rbp6      

Location in the cell

Extracellular   Reliability : 1.079 Nuclear   Reliability : 1.404 PlasmaMembrane   Reliability : 1.105

CDS

ATGTTTGCAGTTGACCTGACCAACGGCCAACTCACACCGAACAACAACACACCGCTTCTCGCGCAGGCGCTCTCAGTGATGAACAACTATCAAGCTGCAGCGGCTGGCTTTGGACCTCCGGCGTCTCCTCACGCTGCCGGTGGACGCGCTGGGTTCCCGGCCGCGAGCTCCCCGGGACCAGCCCTCGACGTGTACGGGTCTGCAGCGGACAGTGTTGGCTACGTCCAGGCTGCTAGTCCCCAGCCCTCTGGATTCCCCGCGATTGCTGTCAGCCGCGCTCCCCTCAATTACACCCCAGGACCCCTGATTCCGGCGGCTTTCACCAACGGATATCATTGA

Protein

MFAVDLTNGQLTPNNNTPLLAQALSVMNNYQAAAAGFGPPASPHAAGGRAGFPAASSPGPALDVYGSAADSVGYVQAASPQPSGFPAIAVSRAPLNYTPGPLIPAAFTNGYH

Description

RNA binding protein that regulates the expression of target mRNAs at the translation level. May play a role in the proliferation and maintenance of stem cells in the central nervous system (By similarity).

Similarity

Belongs to the Musashi family.

Keywords

Alternative splicing   Complete proteome   Cytoplasm   Reference proteome   Repeat   RNA-binding  

Feature

chain  RNA-binding protein Musashi homolog Rbp6
splice variant  In isoform C.

Uniprot

A0A2A4ISX8   A0A3S2P1Q0   A0A194QE64   A0A0E3X695   A0A194QR89   A0A182JI30   + More
A0A182LK87   A0A182UKI2   A0A1L8DGR6   A0A182QCB7   A0A182I4N4   A0A182NKI7   A0A0K8TLT9   A0A1J1I795   A0A1Y1N9J1   A0A139WBC6   A0A3F2Z1X8   A0A139WBJ1   A0A1Y1N9J3   A0A1Y1NA14   A0A2M4AP90   W8C2V0   A0A2C9H5S3   A0A1J1I9A1   A0A0A1XI81   A0A2M3Z9S5   A0A2M4AIL9   A7UUH3   A0A1I8MH30   A0A2M4CSP3   A0A2M4CSK0   A0A2M3Z967   A0A0K8U076   A0A212F376   A0A0J9RX16   M9NG33   A0A0R1DYG9   A0A0Q5UJ76   A0A1W4W4M9   A0A1B0FBZ2   A0A0Q9XIQ3   A0A0P8XU17   A0A1B6D1A3   M9PCV2   A0A0R1DY67   A0A0Q5U512   A0A0J9UN01   A0A1W4W369   A0A3B0KJH9   A0A0P8YGM5   B4N6E3   A0A0Q9XBB3   A0A1Y1NEH4   A0A146LUG6   A0A0T6B1U6   A0A1B6I4P0   A0A1B6KNI6   A0A1B6KCZ7   A0A1B6HBR4   H9JBQ5   A0A1B6H0Y8   A0A0L7KP61   A0A182LRB9   B0W6V4   R4WE31   A0A182WBL4   K7IQ65   N6T074   A0A336M0B1   A0A0C9QVP0   A0A1L8DG82   A0A139WBC1   A0A0C9PK15   A0A1Y1NFY6   A0A1Y1NAN9   E0V9J4   U4UH50   W8BS37   A0A0A1WYL5   D5AEM6   A0A195FP54   A0A088ABW3   V9IAU0   V9I9X6   A0A0M5J651   A0A1I8P1Z3   Q9VVE5-3   A0A3L8DNT4   V9IAE1   Q4V4E8   A0A1W4W418   A0A0J9RX70   B4PJY2   B4HKB1   B3NHX8  

Pubmed

26354079    20966253    26369729    28004739    18362917    19820115    + More
24495485    25830018    12364791    14747013    17210077    25315136    22118469    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17994087    17550304    26823975    19121390    26227816    23691247    20075255    23537049    20566863    12537569    8417324    30249741   

EMBL

NWSH01007890    PCG62769.1    RSAL01000003    RVE54838.1    KQ459302    KPJ01756.1    + More
KP236740    AKB96196.1    KQ461175    KPJ07859.1    GFDF01008534    JAV05550.1    AXCN02000396    APCN01002335    GDAI01002261    JAI15342.1    CVRI01000043    CRK96149.1    GEZM01009443    JAV94592.1    KQ971372    KYB25220.1    KYB25221.1    GEZM01009444    JAV94591.1    GEZM01009446    JAV94589.1    GGFK01009269    MBW42590.1    GAMC01010466    JAB96089.1    CRK96148.1    GBXI01003606    JAD10686.1    GGFM01004474    MBW25225.1    GGFK01007305    MBW40626.1    AAAB01008960    EDO63951.1    GGFL01004194    MBW68372.1    GGFL01003973    MBW68151.1    GGFM01004326    MBW25077.1    GDHF01032388    GDHF01022268    JAI19926.1    JAI30046.1    AGBW02010608    OWR48184.1    CM002912    KMZ00197.1    AE014296    AFH04483.1    CM000159    KRK02025.1    CH954178    KQS44054.1    CCAG010000100    CH933809    KRG05722.1    CH902618    KPU78094.1    GEDC01017816    JAS19482.1    AGB94672.1    KRK02024.1    KQS44053.1    KMZ00194.1    KMZ00195.1    KMZ00200.1    KMZ00201.1    OUUW01000009    SPP85271.1    KPU78095.1    CH964154    EDW79932.2    KRG05724.1    GEZM01009439    JAV94596.1    GDHC01008599    JAQ10030.1    LJIG01016248    KRT81172.1    GECU01025798    JAS81908.1    GEBQ01026972    JAT13005.1    GEBQ01030655    JAT09322.1    GECU01035579    JAS72127.1    BABH01024509    GECZ01001458    JAS68311.1    JTDY01007610    KOB65082.1    AXCM01008296    DS231850    EDS37100.1    AK418049    BAN21264.1    APGK01049918    APGK01049919    KB741161    ENN73459.1    UFQT01000076    SSX19408.1    GBYB01001327    GBYB01006728    GBYB01007789    GBYB01007790    JAG71094.1    JAG76495.1    JAG77556.1    JAG77557.1    GFDF01008621    JAV05463.1    KYB25219.1    GBYB01001328    JAG71095.1    GEZM01009438    JAV94597.1    GEZM01009447    JAV94588.1    DS234994    EEB10050.1    KB632296    ERL91693.1    GAMC01010469    JAB96086.1    GBXI01010375    JAD03917.1    BT124763    ADF28804.1    KQ981430    KYN41724.1    JR036878    AEY57449.1    JR036876    AEY57447.1    CP012525    ALC44568.1    AY122226    S51715    AAB24627.1    AAM52738.1    ABW08559.1    QOIP01000006    RLU22067.1    JR036875    AEY57446.1    BT023058    AAY55474.1    KMZ00198.1    EDW94751.1    CH480815    EDW41852.1    EDV51993.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000053240    UP000075880    UP000075882    + More
UP000075902    UP000075886    UP000075840    UP000075884    UP000183832    UP000007266    UP000076407    UP000075903    UP000007062    UP000095301    UP000007151    UP000000803    UP000002282    UP000008711    UP000192221    UP000092444    UP000009192    UP000007801    UP000268350    UP000007798    UP000005204    UP000037510    UP000075883    UP000002320    UP000075920    UP000002358    UP000019118    UP000009046    UP000030742    UP000078541    UP000005203    UP000092553    UP000095300    UP000279307    UP000001292   

PRIDE

M9PCV2    H9JBQ5    Q9VVE5    Q4V4E8   

Pfam

PF00076   RRM_1

Interpro

IPR034130   MSI_RRM1        + More
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR034126   MSI_RRM2       
IPR035979   RBD_domain_sf       
IPR037366   BOULE/DAZ       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12576  RRM1_MSI
cd12323  RRM2_MSI

ProteinModelPortal

A0A2A4ISX8   A0A3S2P1Q0   A0A194QE64   A0A0E3X695   A0A194QR89   A0A182JI30   + More
A0A182LK87   A0A182UKI2   A0A1L8DGR6   A0A182QCB7   A0A182I4N4   A0A182NKI7   A0A0K8TLT9   A0A1J1I795   A0A1Y1N9J1   A0A139WBC6   A0A3F2Z1X8   A0A139WBJ1   A0A1Y1N9J3   A0A1Y1NA14   A0A2M4AP90   W8C2V0   A0A2C9H5S3   A0A1J1I9A1   A0A0A1XI81   A0A2M3Z9S5   A0A2M4AIL9   A7UUH3   A0A1I8MH30   A0A2M4CSP3   A0A2M4CSK0   A0A2M3Z967   A0A0K8U076   A0A212F376   A0A0J9RX16   M9NG33   A0A0R1DYG9   A0A0Q5UJ76   A0A1W4W4M9   A0A1B0FBZ2   A0A0Q9XIQ3   A0A0P8XU17   A0A1B6D1A3   M9PCV2   A0A0R1DY67   A0A0Q5U512   A0A0J9UN01   A0A1W4W369   A0A3B0KJH9   A0A0P8YGM5   B4N6E3   A0A0Q9XBB3   A0A1Y1NEH4   A0A146LUG6   A0A0T6B1U6   A0A1B6I4P0   A0A1B6KNI6   A0A1B6KCZ7   A0A1B6HBR4   H9JBQ5   A0A1B6H0Y8   A0A0L7KP61   A0A182LRB9   B0W6V4   R4WE31   A0A182WBL4   K7IQ65   N6T074   A0A336M0B1   A0A0C9QVP0   A0A1L8DG82   A0A139WBC1   A0A0C9PK15   A0A1Y1NFY6   A0A1Y1NAN9   E0V9J4   U4UH50   W8BS37   A0A0A1WYL5   D5AEM6   A0A195FP54   A0A088ABW3   V9IAU0   V9I9X6   A0A0M5J651   A0A1I8P1Z3   Q9VVE5-3   A0A3L8DNT4   V9IAE1   Q4V4E8   A0A1W4W418   A0A0J9RX70   B4PJY2   B4HKB1   B3NHX8  

KEGG

101742820    K14411 RNA-binding protein Musashi | (RefSeq) RNA-binding protein Musashi homolog Rbp6

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0005737   GO:1990904   GO:0005844   GO:0003727   GO:0008266   GO:0048864   GO:0016021  

PANTHER

PTHR11176  

Subcellular location

Cytoplasm  

Length:

112

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02544

Exp number, first 60 AAs:

0.01336

Total prob of N-in:

0.15184

outside

1  -  112

 

 

Pi

239.422072

Theta

184.808576

Tajima's D

0.990487

CLR

0.000446

CSRT

0.664216789160542

Interpretation

Uncertain