Silkworm Genome Informatics Database

Gene

KWMTBOMO05827

Pre Gene Modal

BGIBMGA006949

Annotation

hypothetical_protein_KGM_05193_[Danaus_plexippus]

Location

Bomo_Chr10(+):11337101-11356921 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.694 Nuclear Reliability : 1.306

CDS

ATGCTCCCAGCAAACCTGGCGAAGACGAGAGCTGCCGGTCGCGGCGCGTACGATTTCATGTGGTCATTGGGTGCTCTTCCTGACGGTTTTCCCGCAGCATACGCCGCCTACGCGGCTGGACGTAGCTATTCGGGCTATCCTAGCTTCGGGCTGCCGTACCCAGCAGGTAATCCCCTGGCGAGCTTGCACCACCAAATATCCGGCAATCATTACCACCACCTGGCGACCCTTCTGCCATACCACCCGCTCGAGCTCAGCGGGGTTTACAATGTACACGCCATGCATCTGTGA

Protein

MLPANLAKTRAAGRGAYDFMWSLGALPDGFPAAYAAYAAGRSYSGYPSFGLPYPAGNPLASLHHQISGNHYHHLATLLPYHPLELSGVYNVHAMHL

Uniprot

A0A0L7LV67 A0A194Q893 A0A212F391 A0A2A4IX33 A0A0A9WVC8 A0A2M4AJ70 + More
A0A0K8SFM4 A0A3L8DNT4 V9IAE1 V9I8J5 A0A154P6P2 W8B4M0 A0A1I8MPT0

Pubmed

26227816 26354079 22118469 25401762 30249741 24495485 + More
25315136

EMBL

JTDY01000034 KOB79279.1 KQ459302 KPJ01757.1 AGBW02010608 OWR48183.1 + More
NWSH01006017 PCG63742.1 GBHO01032218 GBRD01014262 JAG11386.1 JAG51564.1 GGFK01007514 MBW40835.1 GBRD01014261 JAG51565.1 QOIP01000006 RLU22067.1 JR036875 AEY57446.1 JR036877 AEY57448.1 KQ434827 KZC07605.1 GAMC01010470 GAMC01010468 GAMC01010467 GAMC01010465 JAB96090.1

Proteomes

UP000037510 UP000053268 UP000007151 UP000218220 UP000279307 UP000076502 + More
UP000095301

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR034126   MSI_RRM2
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR000504   RRM_dom
IPR034130   MSI_RRM1

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12576 RRM1_MSI
cd12323 RRM2_MSI

ProteinModelPortal

A0A0L7LV67 A0A194Q893 A0A212F391 A0A2A4IX33 A0A0A9WVC8 A0A2M4AJ70 + More
A0A0K8SFM4 A0A3L8DNT4 V9IAE1 V9I8J5 A0A154P6P2 W8B4M0 A0A1I8MPT0

KEGG

101742820 K14411 RNA-binding protein Musashi | (RefSeq) RNA-binding protein Musashi homolog Rbp6

GO

GO:0003723 GO:0016021

Length:

96

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.99071

Exp number, first 60 AAs:

3.90699

Total prob of N-in:

0.40212

outside

1 - 96

Pi

224.454106

Theta

182.127606

Tajima's D

0.696709

CLR

0.192063

CSRT

0.574571271436428

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics