Silkworm Genome Informatics Database

Gene

KWMTBOMO05814

Annotation

PREDICTED:_uncharacterized_protein_LOC105386002_isoform_X1_[Plutella_xylostella]

Location

Bomo_Chr10(+):10698641-10700912 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.13

CDS

ATGGACGCTGTGCCAAAGTTCACGGGTGATGACATCACGTACTCTTCTGCGAAGTGGACACAAGATCTCGACGATAATGCCGATATATTTGGGTGGAGCCAGCAGCAGAAACTCATTATAGCGCGACGATGTTTAGCTGGAACAGCAGAATTATGGCTAAAAAGCGAAAAAACTTTCAGAAGTTACGAAGAACTAAAAGTGGCTTTGATGAAGGAATTCCCTGAGGTGATAAACAGTAAACAAATGCATGAGACAATGAGCAGACGGAAAAAACAACCCAATGAGTCGTTTTATCAATATATGCTCGTAATGAAAGAACTCGGAAAAAGAGCTAAGTTTCCGGATTACGTCGCGATTCAGTATATAATCGACGGAATATCTGACTATGAATCTAACAAGTTGTTATTTTACGGGGTAACGTCGTATTCTGTGCTCAAGGAGAAATTAGTATTATATGAAAGTTTCAAAGAGAAGTCCAAAAAAAGTGTTGATACCATGAGACGAGGTCAGCGAGACACGGCGGTAATGCCTAGACAGGTTCATCGATGTTACAATTGTGGTGAAAGAGGGCACCTATCTAATTCCTGCCGCAGAGGTATCAAATGCTTCAAGTGCAACGGGTTCGGGCACAAGGGTACGGAGTGCCGCGCATCACAAGGTATGGAAGCTAAAAAAGCATCAAATAATTATTATGGAGGAGGTGATGAACAAGATCGGCGATCTATGTTTGTTCGACAGCAGGAGGACGACGAGAAGAACGAGAACGAACTATACGAACGTGAGCAATGCGATTTAAAAGAGCAAGTGAGTGATATGCCAAATTTTAGTTGTCAACAACTAAATCATATTGTTTCGTCAAATTTATTAAATGTAAACAAACGTGATTCTATAAACATGAGTGTAAAATCAGTAAAAGTTGGTAACTATGTGACTAATTGTTTAATTGACACAGGTAGCGACTTAAATTTAATAACTTTTGATTTGTTTACAAAACTAAAATGCGAGTACATACCAGAAAAAATGTTGCTTACTGGGTTAGGAAGCTCTAAGGTATATTCGATTGGTAAGTTCGACACAGATTTAACTATTGACAGTCACAGATATAGTATTAATTTGTATATTGTACCTACAGGTGGAATACCATATGATGTAATACTGGGTCAACAATTTTTAGTAAATACTATCACAGTTATTGACAAGGGTTTGGTTGAGGTCAGGCCTCCTTGTTATGACATATCGTATCAAAATGCTATCTGTCTATCTTCTAGTAGCAATGACCAGTGTACAGCGGTGAGGGAAATTATTGACAGTTACACACCTTTGAAGACTAAAGATGCACCTATCAGGCTGAAGATTGTGTTGAAGGATGATGTACCAGTTTCACAAAGACCAAGACGACTAGCCATCACTGAAGAACAGTTAGTTAAGCAGCATGTTGATGCATTGAGCAGAAACATACTTTTCACTGACCGAGGTACAGCATTCACAGGCAGTGAGTTCCGAGAATATTGTGAAGAAGAAGACATCGAACATGTTACAATCACTACTGGAATACCTCGTGGAAATGGCCAAGTAGAACGCATGAACAGTATTATTATTTCTGCGTTGACAAAGATGTGTATTGAAGAACCTGGTCACTGGTACAAATATACAAGCAAACTACAACAAGTGATAAACAGCACATACCAGCGGGCAATCTGTACTACGCCATTCGAACTGTTAACAGGAGTGAAACTTAAACTGAAAGAAGATTTATCAATTTTAGAATATTTAGAAGAAGAAAATAGATTGCAATTTATGAATAGGAGAGAAGAAGCACGAAGAGAAGCCAAAGCTCAAATTTTAAGAATGCAAGAGGAGAATAGAAAGACTTATAATAAACGACGTAAAGTAGGAGAAATGTACAAGGTTGGAGATCTTGTAGCTATTCAAAGGACACAATTTGGGAACGCCCTAAAATTGAAACCTAAATTTTATGGACCATATCGCATCACTAGGGAAATGGGGAAAGGTCGATATGAGGTCGAAAAAATAGACAGAAGCAAAGATGGGCCAGTACGAACTACATCAGCATTAGATTTCATGAAGAGGTGGCCTTGA

Protein

MDAVPKFTGDDITYSSAKWTQDLDDNADIFGWSQQQKLIIARRCLAGTAELWLKSEKTFRSYEELKVALMKEFPEVINSKQMHETMSRRKKQPNESFYQYMLVMKELGKRAKFPDYVAIQYIIDGISDYESNKLLFYGVTSYSVLKEKLVLYESFKEKSKKSVDTMRRGQRDTAVMPRQVHRCYNCGERGHLSNSCRRGIKCFKCNGFGHKGTECRASQGMEAKKASNNYYGGGDEQDRRSMFVRQQEDDEKNENELYEREQCDLKEQVSDMPNFSCQQLNHIVSSNLLNVNKRDSINMSVKSVKVGNYVTNCLIDTGSDLNLITFDLFTKLKCEYIPEKMLLTGLGSSKVYSIGKFDTDLTIDSHRYSINLYIVPTGGIPYDVILGQQFLVNTITVIDKGLVEVRPPCYDISYQNAICLSSSSNDQCTAVREIIDSYTPLKTKDAPIRLKIVLKDDVPVSQRPRRLAITEEQLVKQHVDALSRNILFTDRGTAFTGSEFREYCEEEDIEHVTITTGIPRGNGQVERMNSIIISALTKMCIEEPGHWYKYTSKLQQVINSTYQRAICTTPFELLTGVKLKLKEDLSILEYLEEENRLQFMNRREEARREAKAQILRMQEENRKTYNKRRKVGEMYKVGDLVAIQRTQFGNALKLKPKFYGPYRITREMGKGRYEVEKIDRSKDGPVRTTSALDFMKRWP

Uniprot

A0A2A4JH77 A0A2H1VAI8 A0A023EZG2 A0A023EYH9 A0A0J7K9X8 A0A0A1X9Z0 + More
A0A0K8URI1 A0A1L8DIN4 W8BB66 A0A2M4AEU2 A0A139WKB5 A0A0K8U2D9 J9JNX9 A0A069DWV3

Pubmed

25474469 25830018 24495485 18362917 19820115 26334808 + More

EMBL

NWSH01001586 PCG70783.1 ODYU01001505 SOQ37806.1 GBBI01004551 JAC14161.1 + More
GBBI01004550 JAC14162.1 LBMM01010976 KMQ87102.1 GBXI01006173 JAD08119.1 GDHF01023027 JAI29287.1 GFDF01007768 JAV06316.1 GAMC01016174 JAB90381.1 GGFK01005990 MBW39311.1 KQ971327 KYB28419.1 GDHF01031400 JAI20914.1 ABLF02011059 GBGD01000341 JAC88548.1

Proteomes

UP000218220 UP000036403 UP000007266 UP000007819

Pfam

PF00098   zf-CCHC        + More
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF02037   SAP
PF03732   Retrotrans_gag
PF00077   RVP
PF14392   zf-CCHC_4

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR001969   Aspartic_peptidase_AS
IPR001995   Peptidase_A2_cat
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR036361   SAP_dom_sf
IPR041577   RT_RNaseH_2
IPR003034   SAP_dom
IPR005162   Retrotrans_gag_dom
IPR018061   Retropepsins
IPR025836   Zn_knuckle_CX2CX4HX4C

SUPFAM

SSF50630   SSF50630        + More
SSF57756   SSF57756
SSF53098   SSF53098
SSF68906   SSF68906

Gene 3D

2.40.70.10 3.30.420.10 1.10.720.30

ProteinModelPortal

A0A2A4JH77 A0A2H1VAI8 A0A023EZG2 A0A023EYH9 A0A0J7K9X8 A0A0A1X9Z0 + More
A0A0K8URI1 A0A1L8DIN4 W8BB66 A0A2M4AEU2 A0A139WKB5 A0A0K8U2D9 J9JNX9 A0A069DWV3

PDB

3DLR E-value=1.19676e-10, Score=162

KEGG

NA

GO

GO:0003676 GO:0008270 GO:0004190 GO:0015074 GO:0006508 GO:0005216 GO:0006811 GO:0006541 GO:0016812 GO:0016597

Length:

699

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00885

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00052

outside

1 - 699

Pi

377.073923

Theta

167.841746

Tajima's D

3.369514

CLR

0

CSRT

0.991700414979251

Interpretation

Possibly Balancing Selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree