Gene

KWMTBOMO05798  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006937

Annotation

troponin_C_[Bombyx_mori]

Location

Bomo_Chr10(+):10337281-10352755      View in EpiBrowser

Full name

Troponin C, isoform 3      

Location in the cell

Cytoplasmic   Reliability : 3.596

CDS

ATGGTTCTGGACACCGAAGACTGGGCCGATGAGCTGCCCCCAGAACAGATCGCCGTCCTCCGCAAAGCCTTCGACGGCTTCGACCACAACCGCTCGGGTAGTATCCCCTGTGACTTCGTGGCTGATATCCTGAGAATGATGGGGCAGCCATTCAACAAGAAAATCCTCGAGGAACTTATTGAGGAGGTCGACGCCGACAAATCTGGTCGTCTGGAATTCCCCGAGTTCGTAACTCTGGCCGCTAAGTTCATCGTTGAAGAGGACGCTGAGGCCATGCAGAAAGAACTCAGGGAAGCGTTCAGATTGTACGACAAGGAAGGCAACGGTTACATTCCCACGTCGAGCCTGCGCGAGATCCTCCGGGAATTGGACGAGCAGCTGACTGACGATGAACTCGATGGCCTCATCCAAGAGATCGACACTGACGGAAGCGGCACCGTCGACTTCGACGAGTTCATGGAGATGATGACAGGGGAATAA

Protein

MVLDTEDWADELPPEQIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREILRELDEQLTDDELDGLIQEIDTDGSGTVDFDEFMEMMTGE

Similarity

Belongs to the troponin C family.

Keywords

Calcium   Complete proteome   Metal-binding   Muscle protein   Reference proteome   Repeat  

Feature

chain  Troponin C, isoform 3

Uniprot

I4DLV8   Q5MGI5   C0LZ18   Q1HPK1   I4DIE2   S4PQ02   + More
E7EC48   A0A3S2NMM9   A0A2H1V4I6   A0A212FF47   L0N756   A0A194QR58   A0A2W1C0C1   A0A2A4J1H3   K7J1T0   A0A088A1V5   V5IAE3   E0VPZ8   A0A158NTJ0   A0A1D1ZDP5   D6WZP8   K7J1S9   Q868D2   A0A0C9R6B0   A0A0C9QNU6   A0A170Y0S2   V5JDG8   A0A2R7WIY2   A0A224Y0G7   A0A0P4VRE5   A0A023F9W6   A0A069DW45   R4FPJ7   J3JVB0   A0A146M6Z2   A0A0A9WDW2   A0A146LDJ3   A0A195EEV5   A0A0V0GBM2   V5JDG4   R4WDQ8   A0A2H8TXM9   C4WYG9   A0A1Y1KPA5   A0A146M9Z3   A2I491   A0A1B6LW27   A0A1B6GKM8   A0A1B6DGE2   A0A2S2R557   A0A1W4XLE8   A0A0T6AYJ1   U4TYD9   H9JBP2   A0A1B0CDR0   B3M5H7   B4NPG0   A0A1L8DM14   B5DQG0   B4HBW5   I7LST2   B4KRQ0   B4IZD6   A0A0K8TY42   A0A034VRI4   W8BZR5   B4J8I0   B3MET4   A0A1W4W4N1   X2JCI6   B4PJY5   A0A0M4ECX9   B4HKA8   B3NDD4   B4QNE8   P47949   B4KYF0   B4LDT4   B4MFL8   B4MPC9   A0A0L0BTD6   D3TPS7   A0A1B0AG16   A0A1A9WFK2   A0A0J9RY91   A0A336KZQ2   A0A3Q0J911   R4UW10   W8C8Z7   Q6WEW7   T1PA43   W8BXG0   A0A2J7PW11   Q6WEW8   A0A3B0JM16   A0A1A9YG67   A0A1A9VCF8   Q1A7B1   A0A0A1X843   A0A0K8UE79  

Pubmed

22651552    16023793    26354079    23622113    22118469    28756777    + More
20075255    20566863    21347285    18362917    19820115    12558500    27538518    27129103    25474469    26334808    22516182    23537049    26823975    25401762    23691247    28004739    19121390    17994087    15632085    15696366    25348373    24495485    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    22936249    7980384    26108605    20353571    25315136    16751002    25830018   

EMBL

AK402276    BAM18898.1    AY829801    AAV91415.1    FJ785831    ACN86371.1    + More
DQ443401    DQ675020    ABF51490.1    ABG02550.1    AK401060    KQ459302    BAM17682.1    KPJ01781.1    GAIX01002120    JAA90440.1    HQ649758    ADV36664.1    RSAL01000003    RVE54857.1    ODYU01000639    SOQ35755.1    AGBW02008863    OWR52348.1    AK289350    BAM73876.1    KQ461175    KPJ07834.1    KZ149900    PZC78560.1    NWSH01003996    PCG65586.1    GALX01001335    JAB67131.1    DS235387    EEB15454.1    ADTU01025973    GDJX01002916    JAT65020.1    KQ971372    EFA10458.1    AJ512941    CAD55597.1    GBYB01002281    JAG72048.1    GBYB01002282    JAG72049.1    GEMB01003825    JAR99429.1    KC122901    KU932397    AGI96979.1    APA34033.1    KK854743    PTY18355.1    GFTR01002537    JAW13889.1    GDKW01000978    JAI55617.1    GBBI01000522    JAC18190.1    GBGD01003345    JAC85544.1    ACPB03005592    GAHY01000844    JAA76666.1    APGK01044268    APGK01044269    APGK01044270    APGK01044271    APGK01044272    BT127177    KB741022    AEE62139.1    ENN74977.1    GDHC01003088    JAQ15541.1    GBHO01037615    JAG05989.1    GDHC01013054    JAQ05575.1    KQ978983    KYN26805.1    GECL01001383    JAP04741.1    KC122902    AGI96980.1    AK417893    BAN21108.1    GFXV01006477    MBW18282.1    ABLF02023537    AK343182    BAH72939.1    GEZM01077591    JAV63259.1    GDHC01002048    JAQ16581.1    EF070594    ABM55660.1    GEBQ01012099    JAT27878.1    GECZ01006767    JAS63002.1    GEDC01012586    JAS24712.1    GGMS01015932    MBY85135.1    LJIG01022534    KRT80068.1    KB631843    ERL86654.1    BABH01024458    AJWK01008144    CH902618    EDV39587.1    CH964291    EDW86400.1    GFDF01006571    JAV07513.1    CH379069    EDY73882.1    CH479267    EDW39559.1    BK001457    DAA01505.1    CH933808    EDW08320.1    CH916366    EDV96691.1    GDHF01033314    JAI19000.1    GAKP01014794    JAC44158.1    GAMC01001688    JAC04868.1    CH916367    EDW02339.1    CH902619    EDV35548.1    AE014296    AHN58116.1    CM000159    EDW94754.1    CP012525    ALC43358.1    CH480815    EDW41849.1    CH954178    EDV51996.1    CM000363    CM002912    EDX10818.1    KMZ00189.1    X76042    BT099811    CH933809    EDW17729.1    CH940647    EDW68957.1    CH940667    EDW57189.1    CH963849    EDW73968.1    JRES01001371    KNC23307.1    EZ423429    ADD19705.1    KMZ00190.1    UFQS01000862    UFQS01001231    UFQT01000862    UFQT01001231    SSX07349.1    SSX09866.1    SSX27691.1    KC571907    AGM32406.1    GAMC01002609    JAC03947.1    AY292254    AAQ57577.1    KA645559    AFP60188.1    GAMC01002608    JAC03948.1    NEVH01020940    PNF20521.1    AY292253    AAQ57576.1    OUUW01000001    SPP74589.1    DQ279094    ABB89298.1    GBXI01007392    JAD06900.1    GDHF01027446    GDHF01001820    JAI24868.1    JAI50494.1   

Proteomes

UP000053268    UP000283053    UP000007151    UP000053240    UP000218220    UP000002358    + More
UP000005203    UP000009046    UP000005205    UP000007266    UP000015103    UP000019118    UP000078492    UP000007819    UP000192223    UP000030742    UP000005204    UP000092461    UP000007801    UP000007798    UP000001819    UP000008744    UP000009192    UP000001070    UP000192221    UP000000803    UP000002282    UP000092553    UP000001292    UP000008711    UP000000304    UP000008792    UP000037069    UP000092445    UP000091820    UP000079169    UP000095301    UP000235965    UP000268350    UP000092443    UP000078200   

PRIDE

Q1HPK1    L0N756    H9JBP2    X2JCI6    P47949   

Pfam

PF13499   EF-hand_7        + More
PF13833   EF-hand_8

Interpro

IPR011992   EF-hand-dom_pair        + More
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF47473   SSF47473       

CDD

cd00051  EFh

ProteinModelPortal

I4DLV8   Q5MGI5   C0LZ18   Q1HPK1   I4DIE2   S4PQ02   + More
E7EC48   A0A3S2NMM9   A0A2H1V4I6   A0A212FF47   L0N756   A0A194QR58   A0A2W1C0C1   A0A2A4J1H3   K7J1T0   A0A088A1V5   V5IAE3   E0VPZ8   A0A158NTJ0   A0A1D1ZDP5   D6WZP8   K7J1S9   Q868D2   A0A0C9R6B0   A0A0C9QNU6   A0A170Y0S2   V5JDG8   A0A2R7WIY2   A0A224Y0G7   A0A0P4VRE5   A0A023F9W6   A0A069DW45   R4FPJ7   J3JVB0   A0A146M6Z2   A0A0A9WDW2   A0A146LDJ3   A0A195EEV5   A0A0V0GBM2   V5JDG4   R4WDQ8   A0A2H8TXM9   C4WYG9   A0A1Y1KPA5   A0A146M9Z3   A2I491   A0A1B6LW27   A0A1B6GKM8   A0A1B6DGE2   A0A2S2R557   A0A1W4XLE8   A0A0T6AYJ1   U4TYD9   H9JBP2   A0A1B0CDR0   B3M5H7   B4NPG0   A0A1L8DM14   B5DQG0   B4HBW5   I7LST2   B4KRQ0   B4IZD6   A0A0K8TY42   A0A034VRI4   W8BZR5   B4J8I0   B3MET4   A0A1W4W4N1   X2JCI6   B4PJY5   A0A0M4ECX9   B4HKA8   B3NDD4   B4QNE8   P47949   B4KYF0   B4LDT4   B4MFL8   B4MPC9   A0A0L0BTD6   D3TPS7   A0A1B0AG16   A0A1A9WFK2   A0A0J9RY91   A0A336KZQ2   A0A3Q0J911   R4UW10   W8C8Z7   Q6WEW7   T1PA43   W8BXG0   A0A2J7PW11   Q6WEW8   A0A3B0JM16   A0A1A9YG67   A0A1A9VCF8   Q1A7B1   A0A0A1X843   A0A0K8UE79  

PDB

4IL1     E-value=5.1637e-26,     Score=287

KEGG

733030    no KO assigned | (RefSeq) troponin C

GO

GO:0005509   GO:0032440   GO:0048306   GO:0003009   GO:0006937   GO:0005861   GO:0051015   GO:0005524   GO:0006468   GO:0005488   GO:0000160   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

Length:

159

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00019

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.13990

outside

1  -  159

 

 

Pi

192.326042

Theta

163.913746

Tajima's D

0.360817

CLR

0.288157

CSRT

0.466226688665567

Interpretation

Uncertain