SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05798  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006937
Annotation
troponin_C_[Bombyx_mori]
Full name
Troponin C, isoform 3      
Location in the cell
Cytoplasmic   Reliability : 3.596
 

Sequence

CDS
ATGGTTCTGGACACCGAAGACTGGGCCGATGAGCTGCCCCCAGAACAGATCGCCGTCCTCCGCAAAGCCTTCGACGGCTTCGACCACAACCGCTCGGGTAGTATCCCCTGTGACTTCGTGGCTGATATCCTGAGAATGATGGGGCAGCCATTCAACAAGAAAATCCTCGAGGAACTTATTGAGGAGGTCGACGCCGACAAATCTGGTCGTCTGGAATTCCCCGAGTTCGTAACTCTGGCCGCTAAGTTCATCGTTGAAGAGGACGCTGAGGCCATGCAGAAAGAACTCAGGGAAGCGTTCAGATTGTACGACAAGGAAGGCAACGGTTACATTCCCACGTCGAGCCTGCGCGAGATCCTCCGGGAATTGGACGAGCAGCTGACTGACGATGAACTCGATGGCCTCATCCAAGAGATCGACACTGACGGAAGCGGCACCGTCGACTTCGACGAGTTCATGGAGATGATGACAGGGGAATAA
Protein
MVLDTEDWADELPPEQIAVLRKAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREILRELDEQLTDDELDGLIQEIDTDGSGTVDFDEFMEMMTGE

Summary

Similarity
Belongs to the troponin C family.
Keywords
Calcium   Complete proteome   Metal-binding   Muscle protein   Reference proteome   Repeat  
Feature
chain  Troponin C, isoform 3
EMBL
AK402276    BAM18898.1    AY829801    AAV91415.1    FJ785831    ACN86371.1    + More
DQ443401    DQ675020    ABF51490.1    ABG02550.1    AK401060    KQ459302    BAM17682.1    KPJ01781.1    GAIX01002120    JAA90440.1    HQ649758    ADV36664.1    RSAL01000003    RVE54857.1    ODYU01000639    SOQ35755.1    AGBW02008863    OWR52348.1    AK289350    BAM73876.1    KQ461175    KPJ07834.1    KZ149900    PZC78560.1    NWSH01003996    PCG65586.1    GALX01001335    JAB67131.1    DS235387    EEB15454.1    ADTU01025973    GDJX01002916    JAT65020.1    KQ971372    EFA10458.1    AJ512941    CAD55597.1    GBYB01002281    JAG72048.1    GBYB01002282    JAG72049.1    GEMB01003825    JAR99429.1    KC122901    KU932397    AGI96979.1    APA34033.1    KK854743    PTY18355.1    GFTR01002537    JAW13889.1    GDKW01000978    JAI55617.1    GBBI01000522    JAC18190.1    GBGD01003345    JAC85544.1    ACPB03005592    GAHY01000844    JAA76666.1    APGK01044268    APGK01044269    APGK01044270    APGK01044271    APGK01044272    BT127177    KB741022    AEE62139.1    ENN74977.1    GDHC01003088    JAQ15541.1    GBHO01037615    JAG05989.1    GDHC01013054    JAQ05575.1    KQ978983    KYN26805.1    GECL01001383    JAP04741.1    KC122902    AGI96980.1    AK417893    BAN21108.1    GFXV01006477    MBW18282.1    ABLF02023537    AK343182    BAH72939.1    GEZM01077591    JAV63259.1    GDHC01002048    JAQ16581.1    EF070594    ABM55660.1    GEBQ01012099    JAT27878.1    GECZ01006767    JAS63002.1    GEDC01012586    JAS24712.1    GGMS01015932    MBY85135.1    LJIG01022534    KRT80068.1    KB631843    ERL86654.1    BABH01024458    AJWK01008144    CH902618    EDV39587.1    CH964291    EDW86400.1    GFDF01006571    JAV07513.1    CH379069    EDY73882.1    CH479267    EDW39559.1    BK001457    DAA01505.1    CH933808    EDW08320.1    CH916366    EDV96691.1    GDHF01033314    JAI19000.1    GAKP01014794    JAC44158.1    GAMC01001688    JAC04868.1    CH916367    EDW02339.1    CH902619    EDV35548.1    AE014296    AHN58116.1    CM000159    EDW94754.1    CP012525    ALC43358.1    CH480815    EDW41849.1    CH954178    EDV51996.1    CM000363    CM002912    EDX10818.1    KMZ00189.1    X76042    BT099811    CH933809    EDW17729.1    CH940647    EDW68957.1    CH940667    EDW57189.1    CH963849    EDW73968.1    JRES01001371    KNC23307.1    EZ423429    ADD19705.1    KMZ00190.1    UFQS01000862    UFQS01001231    UFQT01000862    UFQT01001231    SSX07349.1    SSX09866.1    SSX27691.1    KC571907    AGM32406.1    GAMC01002609    JAC03947.1    AY292254    AAQ57577.1    KA645559    AFP60188.1    GAMC01002608    JAC03948.1    NEVH01020940    PNF20521.1    AY292253    AAQ57576.1    OUUW01000001    SPP74589.1    DQ279094    ABB89298.1    GBXI01007392    JAD06900.1    GDHF01027446    GDHF01001820    JAI24868.1    JAI50494.1   
Pfam
PF13499   EF-hand_7        + More
PF13833   EF-hand_8
Interpro
IPR011992   EF-hand-dom_pair        + More
IPR002048   EF_hand_dom       
IPR018247   EF_Hand_1_Ca_BS       
SUPFAM
SSF47473   SSF47473       
PDB
4IL1     E-value=5.1637e-26,     Score=287

Ontologies

Topology

Length:
159
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.13990
outside
1  -  159
 
 

Population Genetic Test Statistics

Pi
192.326042
Theta
163.913746
Tajima's D
0.360817
CLR
0.288157
CSRT
0.466226688665567
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 SGSIPCDFVADILR 100.00 5e-06
28556443 SGSIPCDFVADILR 100.00 3e-04
28556443 LEFPEFVTLAAK 100.00 3e-04
28556443 LEFPEFVTLAAK 100.00 3e-04
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