Silkworm Genome Informatics Database

Gene

KWMTBOMO05793

Pre Gene Modal

BGIBMGA006918

Annotation

PREDICTED:_putative_zinc_metalloproteinase_C607.06c_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr10(-):10164202-10169235 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.477 PlasmaMembrane Reliability : 1.921

CDS

ATGGATAACCGCACGAGTTATGATTCTGAAAACGAACAGAACTCATCGATTTTCGTAACAAACTTTCAAAATGGAGACAGCGTTAACTATTCTGTTGTTCTTCTTAAAGGAATAATAACACGTTTAAACTGTAATACCCAAGAAAAGTTAATCTGTTCAATCACAAACAACGGGACACAAAGTAAAACGCAATGGGATGTCCATAATGGAGAGTTTAAGGCAATAATTGAATTAAAACATGGAGAAAATGTGATTGAACTTGAGTACACAGAACAACAACGCCGGAAATTTATTTTAGATTACACACCGAGAAAAACGAATCTAAGGGTAACACCTGTCTACATTATTTGCCAAGGCCATGACGGTTGTTTTCAAAGTCCATCCGATATTGACAACTCTATAGAGAGTGCATGTTTACGTATATCTCTTGGCTGTAAACTAATACAAAGTTTAACAGCTGAAAAATTGTTTGAAAGTGGCAATGGCCGAAAAACATTTCAACTCGAACACGAAGTCAACCCAAAGAAACCAGAATGCATAATATTCAAGAGTACGCTAAATGTGAACAAAGCTAGAAAAATGAAACAAGCTGAATTATGGTCTCACTTTGGTAGAGAGCTCATGCTTTCTGATTTAGGAAGCAATGAGAGGAAATTTATAGGTTTTATATCTTGCACAAGGTATAAAGGAACTGATCTCGACAAGCCTATGACACATGAAGAGACAGTTTCTATGACTGAAGCTTACGCGGCTTTGGGTGGTGGAGGATTGGCTTTATTTGGAACAGCATGCTTATACACTTGGCCTACAACTATTGATGAAATAATCCCAAAATTTATGAATTCAACACCCGTAAATCCAAAGAGGTTCATGGACGATAGTGGTTATCGTGGAACACTCGGAGGCTGCTTTGCAACAACTTTGGGCTCCACACAACACACAATAGTTTGTTTTGAAGATGTGAAGTCTTTCCCGCCTGTTGTAAATGGAAAAATTAATTTGGTGAGCTTCTTGGAAGCTGCAACGGATTTGGTCTACCTTGTTGAACGCCTTGGCACAGCTTTTGCACCTGTAAAATTTGATATGCAAGGAAATATTGATAGAATAAAAAAAAATTACAAATTTGATGAAAATTCCTGTTTACTGATGTTAATGCTTGAAGAAATTAATAATGGTAAAGCTCCTGTTACTGAAGGAGTTTTATGGCTTAACAGAGCTCTGCTGTTTTTTGAATTAGTATTTGTAGATATACTAGAAAATTTACAGGCAAAAAAGGAGATAAATATGAAATATGTATTCACCAAAGCATATGAAGGTTCTGTAAAGAAGTATCACAGTTGGGTCACACAACAATTATTTATATTCATCTGCAAGATGTCACCAACTTTTGCACAAATGATCAAATCTTTTGGAGTTGATGGTGATATCAAAAGTTTCGAGACAAAATTGGCGAGTTTCAATATCACATTGCACTTAAATCGCTGCAAGATAGACGACTTTTTTAAAGACAACAACTTATTTAGTGATACAGCTTAA

Protein

MDNRTSYDSENEQNSSIFVTNFQNGDSVNYSVVLLKGIITRLNCNTQEKLICSITNNGTQSKTQWDVHNGEFKAIIELKHGENVIELEYTEQQRRKFILDYTPRKTNLRVTPVYIICQGHDGCFQSPSDIDNSIESACLRISLGCKLIQSLTAEKLFESGNGRKTFQLEHEVNPKKPECIIFKSTLNVNKARKMKQAELWSHFGRELMLSDLGSNERKFIGFISCTRYKGTDLDKPMTHEETVSMTEAYAALGGGGLALFGTACLYTWPTTIDEIIPKFMNSTPVNPKRFMDDSGYRGTLGGCFATTLGSTQHTIVCFEDVKSFPPVVNGKINLVSFLEAATDLVYLVERLGTAFAPVKFDMQGNIDRIKKNYKFDENSCLLMLMLEEINNGKAPVTEGVLWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSFETKLASFNITLHLNRCKIDDFFKDNNLFSDTA

Uniprot

H9JBM3 A0A212F9I8 A0A182G130 Q17CJ2 A0A182GPE2 A0A1S4F8B6 + More

Pubmed

19121390 22118469 26483478 17510324

EMBL

BABH01024441 BABH01024442 BABH01024443 BABH01024444 AGBW02009584 OWR50390.1 + More
JXUM01135834 KQ568339 KXJ69045.1 CH477308 EAT44029.1 JXUM01078327 KQ563059 KXJ74556.1

Proteomes

UP000005204 UP000007151 UP000069940 UP000249989 UP000008820

PRIDE

H9JBM3

Pfam

PF12044 Metallopep + More
PF08718 GLTP

Interpro

IPR021917   Unchr_Zn-peptidase-like        + More
IPR036497   GLTP_sf
IPR014830   Glycolipid_transfer_prot_dom

SUPFAM

SSF110004 SSF110004

Gene 3D

1.10.3520.10

ProteinModelPortal

H9JBM3 A0A212F9I8 A0A182G130 Q17CJ2 A0A182GPE2 A0A1S4F8B6 + More

PDB

5KDI E-value=1.61324e-10, Score=160

KEGG

692943 no KO assigned | (RefSeq) glycolipid transfer protein

GO

GO:0005737 GO:0120013 GO:0017089 GO:0046836 GO:0051861 GO:0000160 GO:0005216 GO:0006811 GO:0006541 GO:0016812 GO:0016597 GO:0120009

Length:

511

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

9.80626999999999

Exp number, first 60 AAs:

0.02825

Total prob of N-in:

0.42160

outside

1 - 511

Pi

257.080885

Theta

201.339725

Tajima's D

0.96663

CLR

0.445834

CSRT

0.648617569121544

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics