Gene

KWMTBOMO05791

Pre Gene Modal

BGIBMGA006919

Annotation

PREDICTED:_39S_ribosomal_protein_L16?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr10(-):10149673-10154225      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.731

CDS

ATGTTCTACAGACCATTTCGTAGCTGTTTCGGTTTATTGCAAGCTGAAAAAGCTCAGCTAACTCTAGTTGCAGGTTTAAAATATTTTCCTCCGCCAAAAAATTATGACCATATTGAAATACCCGAAAGACAAAGGTTGCGGGTATATGATAAAGTGCCACAGTATCCTCCAAACTTAAAACCACCCAAGATGCAGAAGAGACTCAGATACATGAGAGGACCAGAGGAAGTCCACACAACATTACAGTTGAAACAATATGGTGTCCGTGCCACTGGAGGTGGAAGAATGAAACACGAACATTTTGAAATGGCTCGCTTAGTTGTTGCCAGGAAATTAGACATGAAACGTATGTTTGCCATCTGGAGAATAGATCCTCCATGGCAACCCATAACCAAGAAAGGACAAGGTCAGCGAATGGGTGGTGGAAAAGGAGCTATTGATCATTATGTAACCCCTATAAAATCTGGTAGAATCATTCTTGAAGTTGGTGGCAAATGTGAATATGCTGAGGTACACGACATGTTGAGAATAATATCTGAAAGATTGCCTTTCAAAGCTGAGCCAGTTTCTGAAGAGATTTTAGAGCAGAAAGCAGCTGAAGAAAAATGGTTAGAAGAAAATAACCAAAATGAATACACAATGAAATATATTATACAGAACAATATGGGTGGCTGTCACAAAATGCTGTCTCCATTTGATCACAAATGGTATACGAAATATTTGTAA

Protein

MFYRPFRSCFGLLQAEKAQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITKKGQGQRMGGGKGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKYL

Similarity

Belongs to the universal ribosomal protein uL16 family.

Uniprot

A0A2H1WHI6   A0A2A4J9U4   A0A2W1C0S8   A0A194QW82   H9JBM4   A0A0L7LUB1   + More
A0A194Q9X2   A0A195FPJ6   A0A1W4WZU7   A0A158NTT2   A0A195CV80   U5EVR5   E9IPH4   A0A195BMG2   A0A151JR08   V5H0K0   E1ZYJ3   F4WJ30   A0A026WMS6   A0A1Y1MS23   J3JY35   A0A1B0BR10   A0A151WLS7   A0A336L4I0   D3TQF4   A0A1B0A9X7   A0A1I8MG53   A0A1A9VC82   A0A1A9WFV2   A0A3F2YTY4   A0A182H755   A0A182N1W6   B4N1V7   A0A1Q3FXR3   A0A1B0GI18   A0A340TBG6   A0A182SZX1   A0A1B0F0N3   E2BIB7   A0A1L8DRG1   A0A0M3QZH9   Q29I36   A0A0R3NZK3   A0A1L8DRQ2   A0A2M3ZI19   A0A1W4VEU6   B4I9K5   A0A1A9Y2W0   A0A2M4BY28   B3P8S8   Q9W547   B4L5M9   A0A182QYN9   O46082   A0A2Y9D1N6   A0A2M4ALG6   A0A3B0L0P2   B4M334   D6X036   B3MXH3   A0A0N8P0K9   B4JWY4   A0A1L8EH56   A0A1I8NRX5   A0A182MGE8   A0A2Y9D3Y7   A0A2C9GR04   A0A182UDZ6   Q7Q7W6   A0A1L8EIH4   A0A182J1G6   A0A182PGA4   A0A182VJ99   A0A2M4CWW5   A0A2Y9D0G7   A0A182FM07   A0A2M4CVJ0   B0WAC4   A0A2H8THS8   A0A067RDG8   A0A084WDY0   A0A0A1WM58   J9JX68   T1I4Y3   R4FNA2   A0A164KVE8   A0A0P4ZT77   A0A0P5BSA3   A0A0P5G1R8   A0A0V0GA02   A0A1J1HVC5   E9GKR6   A0A0K8WM78   A0A0L7R6S9   A0A0P4W2R3   A0A0P4VPH3   R4WDK5   A0A1B6LIN4   K7IT60   A0A224XP66  

Pubmed

28756777    26354079    19121390    26227816    21347285    21282665    + More
20798317    21719571    24508170    30249741    28004739    22516182    23537049    20353571    25315136    26483478    17994087    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18362917    19820115    12364791    14747013    17210077    24845553    24438588    25830018    21292972    27129103    23691247    20075255   

EMBL

ODYU01008616    SOQ52352.1    NWSH01002327    PCG68516.1    KZ149900    PZC78566.1    + More
KQ461175    KPJ07826.1    BABH01024438    JTDY01000086    KOB78969.1    KQ459302    KPJ01790.1    KQ981382    KYN42326.1    ADTU01026148    KQ977279    KYN04074.1    GANO01003289    JAB56582.1    GL764522    EFZ17521.1    KQ976435    KYM87078.1    KQ978615    KYN29803.1    GALX01000679    JAB67787.1    GL435225    EFN73747.1    GL888181    EGI65800.1    KK107167    QOIP01000010    EZA56414.1    RLU17598.1    GEZM01023288    JAV88522.1    APGK01043668    BT128159    KB741015    AEE63120.1    ENN75373.1    JXJN01018876    KQ982959    KYQ48778.1    UFQS01001708    UFQT01001708    SSX11913.1    SSX31475.1    CCAG010008765    EZ423656    ADD19932.1    JXUM01028011    KQ560807    KXJ80812.1    CH963925    EDW78346.1    GFDL01002694    JAV32351.1    AJWK01011181    AJVK01001815    GL448492    EFN84563.1    GFDF01005028    JAV09056.1    CP012528    ALC49453.1    CH379064    EAL31570.1    KRT06361.1    GFDF01005027    JAV09057.1    GGFM01007408    MBW28159.1    CH480825    EDW43886.1    GGFJ01008845    MBW57986.1    CH954183    EDV45533.1    AE014298    AY058507    AAF45685.1    AAL13736.1    AGB94994.1    CH933811    EDW06488.2    AXCN02000973    AL021106    CAA15945.1    GGFK01008283    MBW41604.1    OUUW01000042    SPP89968.1    CH940651    EDW65209.1    KQ971364    DS497725    EFA10066.1    EFA12965.1    CH902630    EDV38438.1    KPU77412.1    CH916376    EDV95260.1    GFDG01000805    JAV17994.1    AXCM01010567    APCN01004670    AAAB01008948    EAA10491.3    GFDG01000277    JAV18522.1    GGFL01005180    MBW69358.1    GGFL01005179    MBW69357.1    DS231870    EDS41014.1    GFXV01001861    MBW13666.1    KK852530    KDR21926.1    ATLV01023080    KE525340    KFB48424.1    GBXI01014158    JAD00134.1    ABLF02012526    ACPB03020597    ACPB03020598    GAHY01000643    JAA76867.1    LRGB01003257    KZS03567.1    GDIP01208245    JAJ15157.1    GDIP01185156    JAJ38246.1    GDIQ01247561    JAK04164.1    GECL01001145    JAP04979.1    CVRI01000019    CRK90438.1    GL732550    EFX79922.1    GDHF01000061    JAI52253.1    KQ414646    KOC66461.1    GDRN01093697    GDRN01093696    JAI59839.1    GDKW01002196    JAI54399.1    AK417778    BAN20993.1    GEBQ01016457    JAT23520.1    AAZX01003295    GFTR01003552    JAW12874.1   

Proteomes

UP000218220    UP000053240    UP000005204    UP000037510    UP000053268    UP000078541    + More
UP000192223    UP000005205    UP000078542    UP000078540    UP000078492    UP000000311    UP000007755    UP000053097    UP000279307    UP000019118    UP000092460    UP000075809    UP000092444    UP000092445    UP000095301    UP000078200    UP000091820    UP000075881    UP000069940    UP000249989    UP000075884    UP000007798    UP000092461    UP000075920    UP000075901    UP000092462    UP000008237    UP000092553    UP000001819    UP000192221    UP000001292    UP000092443    UP000008711    UP000000803    UP000009192    UP000075886    UP000075900    UP000268350    UP000008792    UP000007266    UP000007801    UP000001070    UP000095300    UP000075883    UP000076407    UP000075840    UP000075902    UP000007062    UP000075880    UP000075885    UP000075903    UP000069272    UP000002320    UP000027135    UP000030765    UP000007819    UP000015103    UP000076858    UP000183832    UP000000305    UP000053825    UP000002358   

PRIDE

H9JBM4    Q9W547    O46082   

Pfam

PF00252   Ribosomal_L16

Interpro

IPR000114   Ribosomal_L16        + More
IPR016180   Ribosomal_L10e/L16       
IPR036920   Ribosomal_L10e/L16_sf       

SUPFAM

SSF54686   SSF54686       

Gene 3D

3.90.1170.10    

CDD

cd01433  Ribosomal_L16_L10e

ProteinModelPortal

A0A2H1WHI6   A0A2A4J9U4   A0A2W1C0S8   A0A194QW82   H9JBM4   A0A0L7LUB1   + More
A0A194Q9X2   A0A195FPJ6   A0A1W4WZU7   A0A158NTT2   A0A195CV80   U5EVR5   E9IPH4   A0A195BMG2   A0A151JR08   V5H0K0   E1ZYJ3   F4WJ30   A0A026WMS6   A0A1Y1MS23   J3JY35   A0A1B0BR10   A0A151WLS7   A0A336L4I0   D3TQF4   A0A1B0A9X7   A0A1I8MG53   A0A1A9VC82   A0A1A9WFV2   A0A3F2YTY4   A0A182H755   A0A182N1W6   B4N1V7   A0A1Q3FXR3   A0A1B0GI18   A0A340TBG6   A0A182SZX1   A0A1B0F0N3   E2BIB7   A0A1L8DRG1   A0A0M3QZH9   Q29I36   A0A0R3NZK3   A0A1L8DRQ2   A0A2M3ZI19   A0A1W4VEU6   B4I9K5   A0A1A9Y2W0   A0A2M4BY28   B3P8S8   Q9W547   B4L5M9   A0A182QYN9   O46082   A0A2Y9D1N6   A0A2M4ALG6   A0A3B0L0P2   B4M334   D6X036   B3MXH3   A0A0N8P0K9   B4JWY4   A0A1L8EH56   A0A1I8NRX5   A0A182MGE8   A0A2Y9D3Y7   A0A2C9GR04   A0A182UDZ6   Q7Q7W6   A0A1L8EIH4   A0A182J1G6   A0A182PGA4   A0A182VJ99   A0A2M4CWW5   A0A2Y9D0G7   A0A182FM07   A0A2M4CVJ0   B0WAC4   A0A2H8THS8   A0A067RDG8   A0A084WDY0   A0A0A1WM58   J9JX68   T1I4Y3   R4FNA2   A0A164KVE8   A0A0P4ZT77   A0A0P5BSA3   A0A0P5G1R8   A0A0V0GA02   A0A1J1HVC5   E9GKR6   A0A0K8WM78   A0A0L7R6S9   A0A0P4W2R3   A0A0P4VPH3   R4WDK5   A0A1B6LIN4   K7IT60   A0A224XP66  

PDB

6GB2     E-value=9.45827e-41,     Score=417

KEGG

101740486    K02878 large subunit ribosomal protein L16 | (RefSeq) 39S ribosomal protein L16, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0019843   GO:0006412   GO:0005840   GO:0032543   GO:0005762   GO:0000160   GO:0005216   GO:0006811   GO:0006541   GO:0016812   GO:0016597  

PANTHER

PTHR12220  

Length:

241

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0004

Exp number, first 60 AAs:

0.0004

Total prob of N-in:

0.03740

outside

1  -  241

 

 

Pi

137.717811

Theta

138.577113

Tajima's D

-0.403761

CLR

0.408636

CSRT

0.264886755662217

Interpretation

Uncertain