Gene

KWMTBOMO05783

Pre Gene Modal

BGIBMGA006931

Annotation

PREDICTED:_DNA_primase_small_subunit_[Bombyx_mori]

Location

Bomo_Chr10(+):9883566-9886797      View in EpiBrowser

Full name

DNA primase       + More
DNA primase small subunit      

Alternative Name

DNA polymerase subunit A
DNA primase 50 kDa subunit

Location in the cell

Nuclear   Reliability : 2.835

CDS

ATGATTGGCGAACACAATGAAAACATTCTATCTGATATGCTACCCACTTACTATGCCAGGCAATTTCCGCAAAATATATTCTGTAGATGGCTAGCATGCGGTAGTTCGCCTCAACCGCTCTGTAACAGAGAATTATCATTTACTTTAGCTGACGATGTCTACCTCCGTTATTTGTCGATTTCGCATCAAAAGGATTTACAAACCCTTCTTCAAAAGAAATGTCCACACAAATTGGATGTTGGAGCAGTTTACAACACAAAGCCTTCTGTAGGAAGACATGACGCTGTAGTGATATCGCGAGAACTAGTATTCGATATAGATTTAACAGACTATGATGAAATAAGAACATGTTGTCAAGAAGCTAGAGTGTGTGAAAAATGCTGGAAATTTATGGTTATTGCATGTGAAATCATTGATAAAGCTTTAAAAGATGACTTCGGGTTCCAAAGCATCCTGTGGGTATTTTCAGGTCGGCGTGGTATTCACTGTTGGGTATCAGATTATGAAGCCAGAACTCTCGATAGTCCAGGTCGAGGAGCTATTGCCGATTACCTTTGTTTAATCGTAGGTGGTGAAAACCAAAGTAAAAAAGTGCATCTTGGCAATGAAAACTTACATTCCAGTATAAGGCGTGCCTTAAATATAATAGACAAATACTTTGAACAATTATTACAAGATCAGGAATTTTTAGCAACAGATAAGCTAAACTCATTTTTGAAGTTGATACCAGATGATGCGTTAAAATCACAGGTTGAAACAACTTTGAAAAAAATGCAGGAACCATCATTGAATAAGTGGAACACTTTTATAAATATTTATGAAAATTATTGCAGAGAGAATGGAAATGTTATACGAAAAATAAAATATCTTATAGAAGAAATAAAAATTCAATATTGCTACCCCAGATTAGATGTTAATGTGACAAAAGGTTTCAATCACTTGCTCAAGTCTCCATTCAGTATACATCCGAAAACTGGAAAAGTGTCTGTTGTTTTCAAGTCAGCAAATGCAAAGAATTTGAAGATCGATGAAATACCAACAATATACAGTTTATTAGATGATAGTGTCGCCGAAAATAACCAACATGAAACTAATATGAAAGCGGCTGTTAAAATTTTCCAAGAACTTGTATTCGCTTTGGAGAAAACTGAAGCTATGAGAAAACGCAGTGATGCCAATACATCATTGGATTTTTAA

Protein

MIGEHNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLQDQEFLATDKLNSFLKLIPDDALKSQVETTLKKMQEPSLNKWNTFINIYENYCRENGNVIRKIKYLIEEIKIQYCYPRLDVNVTKGFNHLLKSPFSIHPKTGKVSVVFKSANAKNLKIDEIPTIYSLLDDSVAENNQHETNMKAAVKIFQELVFALEKTEAMRKRSDANTSLDF

Description

DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication.

Subunit

Heterodimer of a small subunit and a large subunit.

Miscellaneous

The bound zinc ion is not a cofactor. It is bound to a zinc knuckle motif that may be involved in sequence recognition and the binding of ssDNA (By similarity).

Similarity

Belongs to the eukaryotic-type primase small subunit family.

Keywords

Complete proteome   DNA replication   DNA-directed RNA polymerase   Metal-binding   Nucleotidyltransferase   Primosome   Reference proteome   Transcription   Transferase   Zinc  

Feature

chain  DNA primase

Uniprot

A0A2H1W7Q5   A0A2A4JPF8   A0A2W1BY97   A0A3S2PLI6   A0A0L7LRI6   S4P9R6   + More
A0A194Q8D4   A0A212ER87   A0A1B6BYA8   B0VZL4   W5JHI5   A0A1Q3EVE0   A0A067R177   A0A182GTX1   A0A182Q2N9   Q16GN9   A0A2M4AWM3   A0A182P0W8   B4N4C1   A0A182LXE7   A0A232F7H0   A0A182FD34   A0A084W468   A0A1Y1MTC1   A0A182NKH6   A0A182V876   A0A182KP89   A0A182XM56   Q7Q633   A0A182I1K8   A0A0A9X7K8   A0A182TVY6   A0A182Y380   A0A182WHQ1   A0A0A9XAN5   A0A182JS95   K7J7P7   E2ANH2   A0A0L7RCJ3   E2BLF5   A0A1W4X1C1   A0A182SH83   A0A195C818   A0A182RXH3   A0A026W5P9   A0A2R7WJ88   A0A0J7K8Q4   A0A151J6F8   U4UA18   A0A1W4WQC8   F4WUC1   A0A158NTY4   A0A1B6ML57   A0A2T7PWE1   A0A195FJZ2   A0A0N0U734   A0A3S1HWT3   T1IAU5   D6X0G8   A0A182IMP8   A0A2P2I069   A0A336KC39   A0A1S3HJ03   C1BVQ8   A0A1I8NBL3   A0A0B6ZDD2   T2MG18   A0A226DRU1   A0A1I8QB56   A0A0K2TBP6   A0A210Q007   B3M8K4   A0A3B0JT63   B4LDR1   B4HJH1   B4H625   A0A1W4UER4   Q2LYM6   A0A0N8CZE9   B4PG41   A0A2G8KWZ6   A0A0P6BGB0   Q24317   A0A0P4XU00   A0A0P5DG56   R7THB3   B4KYC8   A0A0P5TRT3   B4QLM9   A0A232FBU8   A0A0P5UPM0   E9FUI0   A0A0J9UH15   B3NFT4   B4IZF6   A0A0K8RIV6   K7IN77   A0A0T6B723   A0A0M4EP81  

EC Number

2.7.7.-

Pubmed

28756777    26227816    23622113    26354079    22118469    20920257    + More
23761445    24845553    26483478    17510324    17994087    28648823    24438588    28004739    20966253    12364791    14747013    17210077    25401762    25244985    26823975    20075255    20798317    24508170    30249741    23537049    21719571    21347285    18362917    19820115    25315136    24065732    28812685    15632085    23185243    17550304    29023486    7929411    10731132    12537572    12537569    23254933    21292972    22936249   

EMBL

ODYU01006887    SOQ49135.1    NWSH01000905    PCG73588.1    KZ149900    PZC78574.1    + More
RSAL01000003    RVE54875.1    JTDY01000239    KOB78113.1    GAIX01003629    JAA88931.1    KQ459302    KPJ01797.1    AGBW02013076    OWR44008.1    GEDC01031060    JAS06238.1    DS231814    EDS31751.1    ADMH02001237    ETN63546.1    GFDL01015770    JAV19275.1    KK853104    KDR11310.1    JXUM01018209    KQ560505    KXJ82093.1    AXCN02000398    CH478251    EAT33409.1    GGFK01011872    MBW45193.1    CH964095    EDW78995.1    AXCM01001401    NNAY01000808    OXU26399.1    ATLV01020284    KE525297    KFB45012.1    GEZM01021589    JAV88922.1    AAAB01008960    EAA11680.4    APCN01000066    GBHO01026902    JAG16702.1    GBHO01026903    GDHC01003256    JAG16701.1    JAQ15373.1    AAZX01003037    GL441216    EFN65021.1    KQ414615    KOC68520.1    GL449017    EFN83507.1    KQ978143    KYM96795.1    KK107390    QOIP01000007    EZA51395.1    RLU20758.1    KK854922    PTY19702.1    LBMM01011458    KMQ86823.1    KQ979854    KYN18799.1    KB632191    ERL89867.1    GL888355    EGI62229.1    ADTU01026199    GEBQ01003345    JAT36632.1    PZQS01000001    PVD37733.1    KQ981522    KYN40718.1    KQ435711    KOX79678.1    RQTK01000103    RUS87721.1    ACPB03005775    KQ971372    EFA09576.1    IACF01001584    LAB67276.1    UFQS01000289    UFQT01000289    UFQT01000316    SSX02456.1    SSX22830.1    SSX23151.1    BT078687    ACO13111.1    HACG01019683    CEK66548.1    HAAD01004628    CDG70860.1    LNIX01000014    OXA46926.1    HACA01005909    CDW23270.1    NEDP02005321    OWF42067.1    CH902618    EDV39978.1    OUUW01000009    SPP85295.1    CH940647    EDW68934.1    CH480815    EDW40695.1    CH479212    EDW33242.1    CH379069    EAL29836.1    GDIP01083855    LRGB01000868    JAM19860.1    KZS15572.1    CM000159    EDW93185.1    MRZV01000325    PIK52533.1    GDIP01015573    JAM88142.1    X79801    AE014296    AY071217    GDIP01240799    JAI82602.1    GDIP01157946    JAJ65456.1    AMQN01003006    KB310691    ELT90971.1    CH933809    EDW17707.1    GDIP01123652    JAL80062.1    CM000363    EDX09689.1    NNAY01000480    OXU28092.1    GDIP01110149    JAL93565.1    GL732525    EFX88920.1    CM002912    KMY98355.1    CH954178    EDV50696.1    CH916366    EDV96711.1    GADI01002731    JAA71077.1    LJIG01009662    KRT82631.1    CP012525    ALC43880.1   

Proteomes

UP000218220    UP000283053    UP000037510    UP000053268    UP000007151    UP000002320    + More
UP000000673    UP000027135    UP000069940    UP000249989    UP000075886    UP000008820    UP000075885    UP000007798    UP000075883    UP000215335    UP000069272    UP000030765    UP000075884    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840    UP000075902    UP000076408    UP000075920    UP000075881    UP000002358    UP000000311    UP000053825    UP000008237    UP000192223    UP000075901    UP000078542    UP000075900    UP000053097    UP000279307    UP000036403    UP000078492    UP000030742    UP000007755    UP000005205    UP000245119    UP000078541    UP000053105    UP000271974    UP000015103    UP000007266    UP000075880    UP000085678    UP000095301    UP000198287    UP000095300    UP000242188    UP000007801    UP000268350    UP000008792    UP000001292    UP000008744    UP000192221    UP000001819    UP000076858    UP000002282    UP000230750    UP000000803    UP000014760    UP000009192    UP000000304    UP000000305    UP000008711    UP000001070    UP000092553   

PRIDE

Q24317   

Pfam

PF01896   DNA_primase_S

Interpro

IPR002755   DNA_primase_S        + More
IPR014052   DNA_primase_ssu_euk/arc       

CDD

cd04860  AE_Prim_S

ProteinModelPortal

A0A2H1W7Q5   A0A2A4JPF8   A0A2W1BY97   A0A3S2PLI6   A0A0L7LRI6   S4P9R6   + More
A0A194Q8D4   A0A212ER87   A0A1B6BYA8   B0VZL4   W5JHI5   A0A1Q3EVE0   A0A067R177   A0A182GTX1   A0A182Q2N9   Q16GN9   A0A2M4AWM3   A0A182P0W8   B4N4C1   A0A182LXE7   A0A232F7H0   A0A182FD34   A0A084W468   A0A1Y1MTC1   A0A182NKH6   A0A182V876   A0A182KP89   A0A182XM56   Q7Q633   A0A182I1K8   A0A0A9X7K8   A0A182TVY6   A0A182Y380   A0A182WHQ1   A0A0A9XAN5   A0A182JS95   K7J7P7   E2ANH2   A0A0L7RCJ3   E2BLF5   A0A1W4X1C1   A0A182SH83   A0A195C818   A0A182RXH3   A0A026W5P9   A0A2R7WJ88   A0A0J7K8Q4   A0A151J6F8   U4UA18   A0A1W4WQC8   F4WUC1   A0A158NTY4   A0A1B6ML57   A0A2T7PWE1   A0A195FJZ2   A0A0N0U734   A0A3S1HWT3   T1IAU5   D6X0G8   A0A182IMP8   A0A2P2I069   A0A336KC39   A0A1S3HJ03   C1BVQ8   A0A1I8NBL3   A0A0B6ZDD2   T2MG18   A0A226DRU1   A0A1I8QB56   A0A0K2TBP6   A0A210Q007   B3M8K4   A0A3B0JT63   B4LDR1   B4HJH1   B4H625   A0A1W4UER4   Q2LYM6   A0A0N8CZE9   B4PG41   A0A2G8KWZ6   A0A0P6BGB0   Q24317   A0A0P4XU00   A0A0P5DG56   R7THB3   B4KYC8   A0A0P5TRT3   B4QLM9   A0A232FBU8   A0A0P5UPM0   E9FUI0   A0A0J9UH15   B3NFT4   B4IZF6   A0A0K8RIV6   K7IN77   A0A0T6B723   A0A0M4EP81  

PDB

4LIL     E-value=2.80513e-82,     Score=778

KEGG

101746695    K02684 DNA primase small subunit [EC:2.7.7.102] | (RefSeq) DNA primase small subunit

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)

GO

GO:0003896   GO:0003899   GO:0006269   GO:0005658   GO:0003697   GO:0016021   GO:0003887   GO:0006260   GO:0046872   GO:0009190   GO:0016849   GO:0004568   GO:0006032   GO:0006541   GO:0016812   GO:0016597  

PANTHER

PTHR10536  

Length:

398

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2e-05

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00426

outside

1  -  398

 

 

Pi

199.548074

Theta

188.407844

Tajima's D

0.186071

CLR

0.48167

CSRT

0.425778711064447

Interpretation

Uncertain