Gene

KWMTBOMO05759  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006888

Annotation

PREDICTED:_ribonuclease_P_protein_subunit_p25-like_protein_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):9483398-9485479      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.359

CDS

ATGGAAAATTATACAAAAGGCAAAAATGTTGAACAGGAGTTTGAACGAGATAAAATTCCCATTGAAGGCTTACCTGATAATTTCCTTTGGATGCAGGTCAGAGGAGGAAGTAAGATGTCAAACCTCCTAAACCACGTAACCGGCATACTAGAAGATAAAACAGCAACAGCAGTTGTTTGGAGCGGTGTTGGTGCAGCTATCTCCAAAACAATATCTTGTGCAGAAATTATAAAAAGGCAATTTTCTATTCAGCACCAAGTGACCAAACTACTGTACCAAATAGTAGAAGAACACTGGGAGCCTAAAATTGAAGGCTTAGAAACGTTAGTAGTTAAACGCCAAATACCTGCTATTCATATTCTCTTAACAAGTGAACCTTTGAAAGATTTTAATCAACTTGGTTGTCAATCAATAAATGGAAAAAAGTTTTGGGAACAAAATGAGAATCAACCAAATAAAAAACAGCAACTACACTCAAAACGAAAAAAGGTATTCAAGCAGATTCAAAATAGCAAAAATTAA

Protein

MENYTKGKNVEQEFERDKIPIEGLPDNFLWMQVRGGSKMSNLLNHVTGILEDKTATAVVWSGVGAAISKTISCAEIIKRQFSIQHQVTKLLYQIVEEHWEPKIEGLETLVVKRQIPAIHILLTSEPLKDFNQLGCQSINGKKFWEQNENQPNKKQQLHSKRKKVFKQIQNSKN

Uniprot

H9JBJ3   A0A2A4JQ14   A0A2W1BUA0   S4PBD7   A0A194Q8E9   A0A194RBN2   + More
A0A2H1WL29   A0A212F649   A0A139WKT2   A0A067QRL9   A0A336M4U5   A0A224XXN4   A0A069DQC0   A0A1Y1NAV1   A0A0V0G9T5   A0A0P4VIL5   A0A1J1ISX9   A0A182MET9   A0A182P202   A0A182TVD4   A0A023EYY2   A0A0K8TKU9   A0A161MGC8   A0A2M4AL47   A0A170YPL1   A0A182FG48   A0A2M3ZAU6   A0A2M3ZA82   A0A182UYV5   A0A182WZ29   Q7PTH5   A0A182KQW2   Q17F94   A0A182I2X7   A0A2R7VRK9   A0A2M4BV46   A0A182RU02   W5JSB0   A0A182WJK5   A0A1W4XU27   A0A084VQQ0   A0A2M4BVK7   A0A182Q9A7   A0A0L7LD94   N6TVI1   A0A182IPV9   B0WT44   A0A182NKM2   A0A1Q3F483   A0A182XYJ1   A0A1B6LT18   A0A1I8N9H2   A0A1I8Q4B0   A0A1B6HDB7   A0A0A9WJ94   W8BK95   A0A0L0C2P8   A0A3Q0JLV5   B4KNI6   B4NMH1   B4P0Z9   B3NB36   B4K2I8   B4J6J3   Q292Z4   B4LK07   B4QDB4   A0A182GUK3   A0A1W4V1Z9   B4GC75   A0A1A9ZUZ0   A0A0M4EHR1   Q0E9N4   D3TKV9   A0A1A9UU21   A0A1B0AKE5   A0A1A9YBZ7   A0A293N014   Q6NNC7   A0A1B0FC62   A0A1Z5KX50   A0A0P5ZIG8   A0A1A9W0Z8   H9GAW3   A0A3B0J479   A0A0B8RR51   A0A0P6HPM6   A0A2T7PBN9   C3ZYX5   V8NDC3   A0A2D4GS45   A0A2R5LHC9   A0A131XQ55   A0A2H6NHW2   A0A131Z5B5   T1JAK3   A0A023FEF9   A0A2H6NHX4   K7EZM7  

Pubmed

19121390    28756777    23622113    26354079    22118469    18362917    + More
19820115    24845553    26334808    28004739    27129103    25474469    26369729    12364791    14747013    17210077    20966253    17510324    20920257    23761445    24438588    26227816    23537049    25244985    25315136    25401762    26823975    24495485    26108605    17994087    17550304    18057021    15632085    22936249    26483478    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20353571    28528879    21881562    25476704    18563158    24297900    28049606    26830274    17381049   

EMBL

BABH01030966    NWSH01000887    PCG73684.1    KZ149900    PZC78589.1    GAIX01004671    + More
JAA87889.1    KQ459302    KPJ01812.1    KQ460398    KPJ15017.1    ODYU01009364    SOQ53738.1    AGBW02010077    OWR49206.1    KQ971323    KYB28562.1    KK853042    KDR12159.1    UFQS01001638    UFQT01000344    UFQT01001638    SSX11712.1    SSX23417.1    GFTR01003114    JAW13312.1    GBGD01003043    JAC85846.1    GEZM01007620    JAV95042.1    GECL01001588    JAP04536.1    GDKW01001919    JAI54676.1    CVRI01000059    CRL03347.1    AXCM01004717    GBBI01004289    JAC14423.1    GDAI01002842    JAI14761.1    GEMB01003093    JAS00116.1    GGFK01008163    MBW41484.1    GEMB01003092    JAS00117.1    GGFM01004892    MBW25643.1    GGFM01004670    MBW25421.1    AAAB01008807    EAA03913.5    CH477272    EAT45253.1    APCN01000188    KK854044    PTY10174.1    GGFJ01007819    MBW56960.1    ADMH02000578    ETN65805.1    ATLV01015290    KE525006    KFB40294.1    GGFJ01007820    MBW56961.1    AXCN02000551    JTDY01001572    KOB73488.1    APGK01050246    KB741169    ENN73295.1    DS232080    EDS34187.1    GFDL01012737    JAV22308.1    GEBQ01013145    JAT26832.1    GECU01034962    GECU01004856    JAS72744.1    JAT02851.1    GBHO01038674    GBRD01007420    GDHC01003658    JAG04930.1    JAG58401.1    JAQ14971.1    GAMC01004825    JAC01731.1    JRES01000975    KNC26600.1    CH933808    EDW08945.1    CH964282    EDW85560.1    CM000157    EDW89073.1    KRJ98160.1    CH954177    EDV59801.1    KQS71015.1    CH919278    EDW04983.1    CH916367    EDW01994.1    CM000071    EAL24717.2    CH940648    EDW61661.1    CM000362    CM002911    EDX05901.1    KMY91767.1    JXUM01089469    KQ563771    KXJ73336.1    CH479181    EDW31393.1    CP012524    ALC42172.1    AE013599    BT044425    AAM70813.1    ACH92490.1    EZ422046    ADD18469.1    JXJN01024675    GFWV01020017    MAA44745.1    BT011363    AAR96155.1    CCAG010011030    GFJQ02007599    JAV99370.1    GDIP01043094    JAM60621.1    AAWZ02028801    OUUW01000001    SPP74182.1    GBSH01001596    JAG67430.1    GDIQ01016080    JAN78657.1    PZQS01000005    PVD30828.1    GG666738    EEN42246.1    AZIM01005396    ETE59633.1    IACJ01140053    LAA62544.1    GGLE01004786    MBY08912.1    GEFH01000256    JAP68325.1    IACI01104368    LAA32901.1    GEDV01001993    JAP86564.1    JH432001    GBBK01004101    JAC20381.1    IACI01104367    LAA32899.1    AGCU01086375   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000007266    + More
UP000027135    UP000183832    UP000075883    UP000075885    UP000075902    UP000069272    UP000075903    UP000076407    UP000007062    UP000075882    UP000008820    UP000075840    UP000075900    UP000000673    UP000075920    UP000192223    UP000030765    UP000075886    UP000037510    UP000019118    UP000075880    UP000002320    UP000075884    UP000076408    UP000095301    UP000095300    UP000037069    UP000079169    UP000009192    UP000007798    UP000002282    UP000008711    UP000001070    UP000001819    UP000008792    UP000000304    UP000069940    UP000249989    UP000192221    UP000008744    UP000092445    UP000092553    UP000000803    UP000078200    UP000092460    UP000092443    UP000092444    UP000091820    UP000001646    UP000268350    UP000245119    UP000001554    UP000007267   

PRIDE

H9JBJ3    Q0E9N4    Q6NNC7   

Pfam

PF01918   Alba

Interpro

IPR002775   DNA/RNA-bd_Alba-like        + More
IPR036882   Alba-like_dom_sf       
IPR024881   Tip       

SUPFAM

SSF82704   SSF82704       

Gene 3D

3.30.110.20    

ProteinModelPortal

H9JBJ3   A0A2A4JQ14   A0A2W1BUA0   S4PBD7   A0A194Q8E9   A0A194RBN2   + More
A0A2H1WL29   A0A212F649   A0A139WKT2   A0A067QRL9   A0A336M4U5   A0A224XXN4   A0A069DQC0   A0A1Y1NAV1   A0A0V0G9T5   A0A0P4VIL5   A0A1J1ISX9   A0A182MET9   A0A182P202   A0A182TVD4   A0A023EYY2   A0A0K8TKU9   A0A161MGC8   A0A2M4AL47   A0A170YPL1   A0A182FG48   A0A2M3ZAU6   A0A2M3ZA82   A0A182UYV5   A0A182WZ29   Q7PTH5   A0A182KQW2   Q17F94   A0A182I2X7   A0A2R7VRK9   A0A2M4BV46   A0A182RU02   W5JSB0   A0A182WJK5   A0A1W4XU27   A0A084VQQ0   A0A2M4BVK7   A0A182Q9A7   A0A0L7LD94   N6TVI1   A0A182IPV9   B0WT44   A0A182NKM2   A0A1Q3F483   A0A182XYJ1   A0A1B6LT18   A0A1I8N9H2   A0A1I8Q4B0   A0A1B6HDB7   A0A0A9WJ94   W8BK95   A0A0L0C2P8   A0A3Q0JLV5   B4KNI6   B4NMH1   B4P0Z9   B3NB36   B4K2I8   B4J6J3   Q292Z4   B4LK07   B4QDB4   A0A182GUK3   A0A1W4V1Z9   B4GC75   A0A1A9ZUZ0   A0A0M4EHR1   Q0E9N4   D3TKV9   A0A1A9UU21   A0A1B0AKE5   A0A1A9YBZ7   A0A293N014   Q6NNC7   A0A1B0FC62   A0A1Z5KX50   A0A0P5ZIG8   A0A1A9W0Z8   H9GAW3   A0A3B0J479   A0A0B8RR51   A0A0P6HPM6   A0A2T7PBN9   C3ZYX5   V8NDC3   A0A2D4GS45   A0A2R5LHC9   A0A131XQ55   A0A2H6NHW2   A0A131Z5B5   T1JAK3   A0A023FEF9   A0A2H6NHX4   K7EZM7  

PDB

6CWX     E-value=2.96444e-14,     Score=186

KEGG

101745517    K14525 ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5] | (RefSeq) ribonuclease P protein sub

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0003676   GO:0003723   GO:0003677   GO:0090502   GO:0000172   GO:0016787   GO:0001682   GO:0030681   GO:0016831   GO:0003824   GO:0019752   GO:0030170   GO:0004568   GO:0006032   GO:0006541   GO:0016812   GO:0016597  

PANTHER

PTHR13412  

Length:

173

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16898

Exp number, first 60 AAs:

0.05053

Total prob of N-in:

0.45145

outside

1  -  173

 

 

Pi

222.129197

Theta

180.249542

Tajima's D

0.509432

CLR

0.00023

CSRT

0.509274536273186

Interpretation

Uncertain