Silkworm Genome Informatics Database

Gene

KWMTBOMO05744

Annotation

PREDICTED:_RNA_binding_protein_fox-1_homolog_1-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr10(+):9179605-9221185 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.814

CDS

ATGTATTATCCTGTGAGTAACGGCAATGTCATCGACACAGGAACACATACCCTACTGCATATGGTGGGGACGGGTATGGCGACCCCGTTCCCTGCGGCGGCGGCGGCTGCGGCTGCGGCTGCACAATTTGCCGCTAATGGCGATGCCCTTGCGGGAGTGAAGGCGGACGCAAGTGGCCCGACGCCCTCTTCACAACCACCTCTAGTTAAAAGCGAAGGTCCACCGACATCGACAGCGCTCTCGACGAACAATTTCTCACCCCAACCTCAGTCACAGCATCAGAATTCAATAGAAAACCAGAATAGTTCACAAAGCGAAGGGGAGTCAAACGAAGAAAACACGCCGGTCAGCGTGGCAGCCGCGGTAGCACAGCAGGCGGCGGCCGTTGCTGTGGCTCAGCAGACCGCAGCCGCCCACGCCGCGGCCGCCGCTGTCAATGCGGCTGTCGCAAACGCAAATGCATCCGTGGCCACCTCACCCGAGAAGACTTTAGTGCCGATGTCACAAGCCTCGCAACCAAAGCGGCTACACGTCTCCAACATACCGTTCAGATTTAGAGATCCCGACCTCAGAAATATGTTTGGGCAATATGGCACAATACTTGATGTAGAAATTATCTTCAACGAGCGCGGATCGAAGGGATTCGGTTTTGTAACATTCGCAAATAGTGGTGATGCGGAGCGAGCACGAGAGCGTCTTCACGGCACCGTGGTTGAGGGCAGAAAGATAGAGGTCAATAACGCGACAGCGCGGGTACAAACGAAGAAACCGCCAACCGTTCCAAACGTGTGTGTGCAGTGGCCCGAAGGTGAGACCTCGCCATTTGTGTCCGGCGCCGGCTCGCTGCGAGGTGCGGCCGTGCTGCGCGCCCGCTCCCCGCGCCCCGCACCGCACACCCTCCCGCACGCACAGCACGCCTTGTTGCCCCGCGCCGCCGCCTACGCACATCACTTGCACGCCTACGCACCTGTTTATTACGACCCGTTCCTAGCCGCAGCCGCTACAGCTGACTCCAACTACAGACTACAGGCCGCAGCAGCCGCGGCGGCGGCAGCGAGCCCCCTGCTGAAGTCTCCGCTGACGTCGGCGCAGCACTCGGCGCTGGCGGCGGCCGCGGCGGCGAACTACGGGGCCGCCGCGCGCGCCGCCGCCGCCGTCTCCGCCGCGCCCGCGCCCACCGCCCTCGCGCCCGTGCCCGCCACGTACGGCAGAGAATATGGAGATCCTTACCTAGGACACAGTATAGGACCGGTTACTGGCTATGGGGCTGCAGTATACAGGAGTGGATACAACAGATTCGCACCGTACTAA

Protein

MYYPVSNGNVIDTGTHTLLHMVGTGMATPFPAAAAAAAAAAQFAANGDALAGVKADASGPTPSSQPPLVKSEGPPTSTALSTNNFSPQPQSQHQNSIENQNSSQSEGESNEENTPVSVAAAVAQQAAAVAVAQQTAAAHAAAAAVNAAVANANASVATSPEKTLVPMSQASQPKRLHVSNIPFRFRDPDLRNMFGQYGTILDVEIIFNERGSKGFGFVTFANSGDAERARERLHGTVVEGRKIEVNNATARVQTKKPPTVPNVCVQWPEGETSPFVSGAGSLRGAAVLRARSPRPAPHTLPHAQHALLPRAAAYAHHLHAYAPVYYDPFLAAAATADSNYRLQAAAAAAAAASPLLKSPLTSAQHSALAAAAAANYGAAARAAAAVSAAPAPTALAPVPATYGREYGDPYLGHSIGPVTGYGAAVYRSGYNRFAPY

Uniprot

H9JBI5 A0A1B1R4Q4

Pubmed

19121390

EMBL

BABH01030939 KU549086 ANT96664.1

Proteomes

UP000005204

PRIDE

H9JBI5

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR035979   RBD_domain_sf
IPR000504   RRM_dom
IPR034237   FOX1_RRM

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12407 RRM_FOX1_like

ProteinModelPortal

H9JBI5 A0A1B1R4Q4

PDB

4ZKA E-value=3.26319e-39, Score=407

KEGG

101735780 K14946 RNA binding protein fox-1 | (RefSeq) RNA binding protein fox-1 homolog 1-like

GO

GO:0003723 GO:0003676 GO:0000166 GO:0007018 GO:0008017 GO:0004553 GO:0004568 GO:0006032 GO:0006541 GO:0016812 GO:0016597

Length:

436

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.25448

Exp number, first 60 AAs:

4.01233

Total prob of N-in:

0.16923

outside

1 - 436

Pi

292.794684

Theta

208.669592

Tajima's D

0.780749

CLR

0.632971

CSRT

0.594020298985051

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics