Gene

KWMTBOMO05742  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006878

Annotation

PREDICTED:_integrin_beta_subunit_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr10(+):9121945-9123777      View in EpiBrowser

Full name

Integrin beta      

Location in the cell

Extracellular   Reliability : 3.775

CDS

ATGTACATAAAACGAACGAGTTTATTGCTGGCAAGCGTGTGGGCGAGCCTGTTGGTCGTGTGTTTTACGCAACACGCAGAGCAGCTGCTTGCCCAGAATCCTTGCTCGAGTAAAACGACCTGTAGCGAATGCGCTCGGACTCCCAGCTGTGCGTGGTGCTTCGCCACCGACTTCAATGGACCTCGATGTTTTAATCCCGCAATGGAAGGCGGTACCGGTGGTTGCGATGAAGCCTACATTTTCAATCCCGACAATCAGCTGTTTGTCGACCCTGCATATAACAGAGACTTGAGTAGAGCAAAGGGTCGCATGGGAATGGCAACAGGCTCGGCAACTTACGAAGAGTCAATGAGCTCTAAGGGAAGTTCATTTGCTGGCAGCGGGAGTGCCGCTGGTGCAGCTGGTGCTGGCGGGAATCTCGTACAAATGAAGCCCCAGAGAGTGAAGCTACAGATGAGAATGAGTATGTCTTCTTCTTTTTCTTGTCCTTGTCCTATGTGTGGTCAGTGCAGCATGTTCACTTTTACCATTCAACTCTACTTAGTCTGGCCATAA

Protein

MYIKRTSLLLASVWASLLVVCFTQHAEQLLAQNPCSSKTTCSECARTPSCAWCFATDFNGPRCFNPAMEGGTGGCDEAYIFNPDNQLFVDPAYNRDLSRAKGRMGMATGSATYEESMSSKGSSFAGSGSAAGAAGAGGNLVQMKPQRVKLQMRMSMSSSFSCPCPMCGQCSMFTFTIQLYLVWP

Similarity

Belongs to the integrin beta chain family.

Feature

chain  Integrin beta

Uniprot

H9JBI3   A0A076JVB8   D1MBK3   A0A3S2P1P8   S4PK99   Q86G85   + More
A2TIK8   C6KE04   D2DMM8   A0A2A4K6E0   A0A023UG44   A0A1E1WNR2   A0A2H1WGL4   A0A194PEH3   A0A194RGI2   F8TAD6   A0A1W4XHH0   A0A1W4XS08   D6X0D6   V5G6J5   V5GVJ5   A0A1B6ET25   A0A1B6FVP7   A0A1B6JXH3   A0A1B0AX62   A0A154PMC2   A0A2P8Y2E2   E2A6Z5   A0A2P9A990   A0A336MWD6   B4NEJ2   A0A1J1HRB8   A0A1B6MUI8   A0A0P5CDN4   A0A0N8A8C6   E9GI17   A0A336MBS4   A0A336M8L1   A0A1I8PFU3   A0A0P6IR12   A0A164YYE1   A0A0P5IU01   A0A0N8B5P6   A0A0P4Y6Q1   A0A0P6AIE1  

Pubmed

19121390    25064490    23622113    12974949    20708011    26354079    + More
21856307    18362917    19820115    29403074    20798317    17994087    21292972   

EMBL

BABH01030933    BABH01030934    KJ511854    AII79413.1    GU129932    ACY74431.1    + More
RSAL01000053    RVE50105.1    GAIX01004620    JAA87940.1    AY237588    AAO85806.1    EF202843    ABM91320.1    GQ178290    ACS66819.1    FJ599745    ACU32665.1    NWSH01000130    PCG79230.1    KJ462516    AHY00655.1    GDQN01007634    GDQN01002429    JAT83420.1    JAT88625.1    ODYU01008525    SOQ52209.1    KQ459606    KPI91428.1    KQ460398    KPJ15041.1    HQ829425    ADW20295.1    KQ971372    EFA10689.2    GALX01002761    JAB65705.1    GALX01002759    JAB65707.1    GECZ01028645    JAS41124.1    GECZ01015487    JAS54282.1    GECU01003808    JAT03899.1    JXJN01005087    JXJN01005088    KQ434978    KZC13006.1    PYGN01001024    PSN38364.1    GL437208    EFN70798.1    LT717638    SIW61630.1    UFQT01003187    SSX34712.1    CH964239    EDW82161.2    CVRI01000020    CRK90591.1    GEBQ01000406    JAT39571.1    GDIP01172638    JAJ50764.1    GDIP01172529    JAJ50873.1    GL732545    EFX80954.1    UFQT01000673    SSX26379.1    SSX26380.1    GDIQ01007080    JAN87657.1    LRGB01000868    KZS15734.1    GDIP01253007    GDIQ01269714    GDIQ01227795    GDIQ01227793    GDIQ01225644    GDIQ01210290    GDIQ01191691    JAI70394.1    JAK41435.1    GDIQ01245981    GDIQ01227794    GDIQ01210291    GDIQ01207807    GDIQ01206458    GDIQ01203248    GDIQ01191690    GDIQ01132238    GDIQ01113476    GDIP01089236    JAK41434.1    JAM14479.1    GDIP01231880    JAI91521.1    GDIP01030205    JAM73510.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000053240    UP000192223    + More
UP000007266    UP000092460    UP000076502    UP000245037    UP000000311    UP000007798    UP000183832    UP000000305    UP000095300    UP000076858   

PRIDE

H9JBI3    D1MBK3   

Pfam

PF07965   Integrin_B_tail        + More
PF07974   EGF_2
PF00362   Integrin_beta
PF17205   PSI_integrin
PF08725   Integrin_b_cyt
PF18372   I-EGF_1

Interpro

IPR014836   Integrin_bsu_cyt_dom        + More
IPR015812   Integrin_bsu       
IPR036465   vWFA_dom_sf       
IPR032695   Integrin_dom_sf       
IPR013111   EGF_extracell       
IPR033760   Integrin_beta_N       
IPR002369   Integrin_bsu_VWA       
IPR012896   Integrin_bsu_tail       
IPR036349   Integrin_bsu_tail_dom_sf       
IPR040622   I-EGF_1       
IPR016201   PSI       

SUPFAM

SSF53300   SSF53300        + More
SSF69687   SSF69687       
SSF69179   SSF69179       

Gene 3D

3.40.50.410    

ProteinModelPortal

H9JBI3   A0A076JVB8   D1MBK3   A0A3S2P1P8   S4PK99   Q86G85   + More
A2TIK8   C6KE04   D2DMM8   A0A2A4K6E0   A0A023UG44   A0A1E1WNR2   A0A2H1WGL4   A0A194PEH3   A0A194RGI2   F8TAD6   A0A1W4XHH0   A0A1W4XS08   D6X0D6   V5G6J5   V5GVJ5   A0A1B6ET25   A0A1B6FVP7   A0A1B6JXH3   A0A1B0AX62   A0A154PMC2   A0A2P8Y2E2   E2A6Z5   A0A2P9A990   A0A336MWD6   B4NEJ2   A0A1J1HRB8   A0A1B6MUI8   A0A0P5CDN4   A0A0N8A8C6   E9GI17   A0A336MBS4   A0A336M8L1   A0A1I8PFU3   A0A0P6IR12   A0A164YYE1   A0A0P5IU01   A0A0N8B5P6   A0A0P4Y6Q1   A0A0P6AIE1  

KEGG

100313947    K05719 integrin beta 1 | (RefSeq) integrin beta subunit 1

GO

GO:0007229   GO:0007155   GO:0016021   GO:0009986   GO:0033627   GO:0007160   GO:0005925   GO:0005178   GO:0008305   GO:0016477   GO:0007298   GO:0021551   GO:0007015   GO:0016328   GO:0031252   GO:0035160   GO:0007508   GO:0003344   GO:1990430   GO:0007431   GO:0007377   GO:0016203   GO:0035099   GO:0006930   GO:0090129   GO:0007411   GO:0030718   GO:0005927   GO:0009925   GO:0007608   GO:0007419   GO:0051492   GO:0046982   GO:0008340   GO:0007391   GO:0035001   GO:0008360   GO:0034446   GO:0042734   GO:0045211   GO:0043034   GO:0045214   GO:0030425   GO:0030336   GO:0048803  

PANTHER

PTHR10082  

Subcellular location

Membrane  

SignalP

Position:   1 - 26,         Likelihood:  0.993083

 

 

Length:

184

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.07417

Exp number, first 60 AAs:

8.25468

Total prob of N-in:

0.51620

outside

1  -  184

 

 

Pi

144.577011

Theta

210.880056

Tajima's D

-0.932683

CLR

61.933449

CSRT

0.149842507874606

Interpretation

Uncertain