Gene

KWMTBOMO05740

Pre Gene Modal

BGIBMGA006877

Annotation

PREDICTED:_sorting_nexin-29-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):9089895-9095639      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.741

CDS

ATGAATAGTAAAATTTTAAATACTTTAGCTAATGCAATTGATCCTAAAGAAGAAATTATGAAAAGAGCGGAAACTGGAAAAGTATTACTCAATGAACTTTCAAAGTGTACACAAAATTGTCTCAACCGATTTGCTGGAAGATCTGAATTAGCTACTGAAGATGATCTCAGAATAATACAGCTGTGTGAAAAATGGGAAGCCATATTAAGACATGGAATAAGAACAAATTTGTCGAACTCAACCATACAAAGCTTGGTGACTGCAGGTTTAAATTTTACATTCAATATTGTAAATATAGGCAACTCATTATGGAGCTATACATGTTTGCATTTGACAAAACATGAAAAAGAAAGATTTAAAATATTGTCAAACATAAACACACCCCTTGGATATTTTAGAGCATTCTTAAGGGCTTCCTTAAATGAAAGATCATTTGAAAGATATCTGCAAAGCTGGGTGGCGCATGGCTTATTAATGGAATATTATGAAGAAGGGGCTCTTGTGAGAGATTCTGAAGCTTCCTTGAAACTTCCTAATATTGCATCTGGCTTATCATCCATTCTATTTGCGTTATCAATTGACAGACCTGAGTTGAATGAATCACAACAGTCAAGTCAAGTAGATAAAGTAGAGCATGTTATACCACTACCGACACCAGTCAAGTCCTCTGGGAACTTAAAACGGAAACCATTACGTCAAGTTATATCATTTGATAAAAATGAACGGAAGACTCAGAACATTGATCATAGTAAAGAGATACACTCAATCAACAGCAAAGATGATGCAATGTGGAACAGTGCACCGGCAACTTGCCTTAATTCTCCTGATCCTAAAATTGTGCCTCAAATATCATCAACAAGTGAACCTGCAAGCTCAGATTTCAAAAGTGGTTTCAGACATTTCTTTCCCGATAGTGTAAAAGGTATAGAAAGTCCTTCACAAATTTTAACAAAACTTTCTGAATGTGCCAAAGAAATATTTTCATCTTCAAACAGTATAGAAACAAACAATACTGCTAAAGATGATGCGTCAGAATTGAGTGTTAACAATTTAAAAATATATGAAAGTGACAGTGAGGAAGTAGCTGGTAGTATTGATGGAAGCACATCGTGCTTGGAGCTTTGCTTCACTGAAGATGAAAGTGCACCAGACGATAAATCATTACTTTCCTTGTTGGAAAATAAAGATAAACAAATTTTGATGTTACAAATGAAATGTAGCCAGTTAGAAGTAGCAAGCAAAGATAAATTTCGAAAACTTGAAAAAGTAATAATAGATCTCACCAAAGAAAACGACACAATAAAGGAGCAGTTACGACATTACATGTCCGCTGTGGATATGGGCAAAGCTCTAAGGAATAATAATGTTCGGGAGGAAGCAAATAATGACAACACTGATGAAATAAACCAGTATGAAAGAAAACTTGTTCAGGTAGCCGAGATGCATGCAGAGCTGATGGAGTTTAACCAGCATCTGGTGCAGAGGCTACAAGAATTGGAAAGCACATGTGCCCTCGAACTATTAGATTACCCTGAGTCTAATGTTAAGGCTCATATTCCCAGTGCATTTTTAGTTGGAAAGAGAACACACTCCTTTCATGTTTATCAAATTTTTCTAAAAGTTGGCAATGAAGAATGGAGCGTCTACCATAGATATGCGAAGTTCCACGAACTTCATACGCAGTTAAAAAAATGTCATCCCGATATAGCAACATACAAATTTCCACCTAAAAAAACCTTAAGAAAACGGGACGCCCATCTAGTCGAGCAGCGCCGCCTAGCGCTCCAGGCGTACCTGCGGCACGTCCTTCTCGTGCTGCCCGAGCTCAGGGAGTGCACCAGCCGGCCGCAGCTCGTCACGCTACTGCCTTTCTTTGGCACCTCCTCGACTTCCAAAGAAAATGGTGTTCACGACGTCCTCGATCGACAACACTCAAGTGACTCTGCCTCATCATACAATGTACTTTGA

Protein

MNSKILNTLANAIDPKEEIMKRAETGKVLLNELSKCTQNCLNRFAGRSELATEDDLRIIQLCEKWEAILRHGIRTNLSNSTIQSLVTAGLNFTFNIVNIGNSLWSYTCLHLTKHEKERFKILSNINTPLGYFRAFLRASLNERSFERYLQSWVAHGLLMEYYEEGALVRDSEASLKLPNIASGLSSILFALSIDRPELNESQQSSQVDKVEHVIPLPTPVKSSGNLKRKPLRQVISFDKNERKTQNIDHSKEIHSINSKDDAMWNSAPATCLNSPDPKIVPQISSTSEPASSDFKSGFRHFFPDSVKGIESPSQILTKLSECAKEIFSSSNSIETNNTAKDDASELSVNNLKIYESDSEEVAGSIDGSTSCLELCFTEDESAPDDKSLLSLLENKDKQILMLQMKCSQLEVASKDKFRKLEKVIIDLTKENDTIKEQLRHYMSAVDMGKALRNNNVREEANNDNTDEINQYERKLVQVAEMHAELMEFNQHLVQRLQELESTCALELLDYPESNVKAHIPSAFLVGKRTHSFHVYQIFLKVGNEEWSVYHRYAKFHELHTQLKKCHPDIATYKFPPKKTLRKRDAHLVEQRRLALQAYLRHVLLVLPELRECTSRPQLVTLLPFFGTSSTSKENGVHDVLDRQHSSDSASSYNVL

Uniprot

A0A2H1WGY5   A0A2A4K4S4   A0A1E1W1B1   A0A1E1WRU0   A0A2A4K6G0   A0A194PDK7   + More
A0A3S2LBM4   A0A212EPQ6   A0A194RC46   A0A0L7LQS0   A0A1W4X2G1   A0A1W4X278   A0A1Y1JX67   A0A1Y1JSY8   E2BNV2   A0A0N0BH99   E0VG85   U4UJD0   A0A2A3EIU4   A0A087ZQ69   A0A154P3Z8   A0A2C9K6S7   A0A0L7R4I4   N6UA22   T1IGL6   A0A1B6EX13   E9J8Q4   A0A151IH67   E2ACM0   A0A0A9ZI25   K7IRM4   A0A151IT09   A0A026WU31   A0A3L8DFY6   F4WAU7   A0A151XFY9   A0A2L2Y9I0   A0A1B6CB94   A0A195F0M2   A0A158P413   X1WJ48   A0A2H8U1Z0   A0A1B6HMV0   A0A224XH26   A0A0K8S6G7   A0A0K8S7Q6   A0A2S2QRD5   K1R182   A0A0P6E022   A0A0J7L894   A0A195BYZ6   A0A0K2UYL9  

Pubmed

26354079    22118469    26227816    28004739    20798317    20566863    + More
23537049    15562597    21282665    25401762    20075255    24508170    30249741    21719571    26561354    21347285    22992520   

EMBL

ODYU01008525    SOQ52206.1    NWSH01000130    PCG79251.1    GDQN01010298    JAT80756.1    + More
GDQN01001346    JAT89708.1    PCG79250.1    KQ459606    KPI91431.1    RSAL01000053    RVE50103.1    AGBW02013402    OWR43482.1    KQ460398    KPJ15044.1    JTDY01000312    KOB77749.1    GEZM01101656    JAV52400.1    GEZM01101657    JAV52399.1    GL449507    EFN82635.1    KQ435756    KOX75912.1    DS235132    EEB12391.1    KB631008    KB632204    ERL83999.1    ERL90090.1    KZ288229    PBC31723.1    KQ434809    KZC06601.1    KQ414658    KOC65666.1    APGK01043444    APGK01043445    KB741014    ENN75472.1    ACPB03012364    GECZ01027369    JAS42400.1    GL769036    EFZ10794.1    KQ977636    KYN01154.1    GL438568    EFN68764.1    GBHO01001289    GBHO01001287    JAG42315.1    JAG42317.1    KQ981039    KYN10144.1    KK107109    EZA59131.1    QOIP01000008    RLU19370.1    GL888053    EGI68703.1    KQ982174    KYQ59312.1    IAAA01013464    LAA03815.1    GEDC01026584    JAS10714.1    KQ981880    KYN33911.1    ADTU01008194    ADTU01008195    ADTU01008196    ABLF02039442    GFXV01007683    MBW19488.1    GECU01031684    JAS76022.1    GFTR01007308    JAW09118.1    GBRD01017068    JAG48759.1    GBRD01017067    JAG48760.1    GGMS01011133    MBY80336.1    JH817156    EKC37234.1    GDIQ01070107    JAN24630.1    LBMM01000230    KMR03603.1    KQ976394    KYM93146.1    HACA01025982    CDW43343.1   

Proteomes

UP000218220    UP000053268    UP000283053    UP000007151    UP000053240    UP000037510    + More
UP000192223    UP000008237    UP000053105    UP000009046    UP000030742    UP000242457    UP000005203    UP000076502    UP000076420    UP000053825    UP000019118    UP000015103    UP000078542    UP000000311    UP000002358    UP000078492    UP000053097    UP000279307    UP000007755    UP000075809    UP000078541    UP000005205    UP000007819    UP000005408    UP000036403    UP000078540   

Pfam

PF00787   PX        + More
PF02759   RUN
PF00054   Laminin_G_1

Interpro

IPR004012   Run_dom        + More
IPR037213   Run_dom_sf       
IPR001683   Phox       
IPR036871   PX_dom_sf       
IPR037916   SNX29_PX       
IPR001791   Laminin_G       
IPR013320   ConA-like_dom_sf       

SUPFAM

SSF64268   SSF64268        + More
SSF140741   SSF140741       
SSF49899   SSF49899       

Gene 3D

3.30.1520.10    

CDD

cd07277  PX_RUN

ProteinModelPortal

A0A2H1WGY5   A0A2A4K4S4   A0A1E1W1B1   A0A1E1WRU0   A0A2A4K6G0   A0A194PDK7   + More
A0A3S2LBM4   A0A212EPQ6   A0A194RC46   A0A0L7LQS0   A0A1W4X2G1   A0A1W4X278   A0A1Y1JX67   A0A1Y1JSY8   E2BNV2   A0A0N0BH99   E0VG85   U4UJD0   A0A2A3EIU4   A0A087ZQ69   A0A154P3Z8   A0A2C9K6S7   A0A0L7R4I4   N6UA22   T1IGL6   A0A1B6EX13   E9J8Q4   A0A151IH67   E2ACM0   A0A0A9ZI25   K7IRM4   A0A151IT09   A0A026WU31   A0A3L8DFY6   F4WAU7   A0A151XFY9   A0A2L2Y9I0   A0A1B6CB94   A0A195F0M2   A0A158P413   X1WJ48   A0A2H8U1Z0   A0A1B6HMV0   A0A224XH26   A0A0K8S6G7   A0A0K8S7Q6   A0A2S2QRD5   K1R182   A0A0P6E022   A0A0J7L894   A0A195BYZ6   A0A0K2UYL9  

PDB

6EE0     E-value=7.99219e-11,     Score=164

KEGG

101743448    K17935 sorting nexin-29 | (RefSeq) sorting nexin-29-like

GO

GO:0035091   GO:0016021   GO:0005524   GO:0006468   GO:0008061   GO:0004553   GO:0004568   GO:0006032   GO:0006541   GO:0016812   GO:0016597  

Length:

655

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.29809

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01349

outside

1  -  655

 

 

Pi

182.374968

Theta

166.019649

Tajima's D

-0.654146

CLR

117.219684

CSRT

0.207639618019099

Interpretation

Uncertain