Silkworm Genome Informatics Database

Gene

KWMTBOMO05732

Pre Gene Modal

BGIBMGA006873

Annotation

PREDICTED:_neural_cell_adhesion_molecule_2-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr10(+):8952616-8976770 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.248 Nuclear Reliability : 1.057 PlasmaMembrane Reliability : 1.139

CDS

ATGCATGCACGTAAATTAACTGTAACGTTGACCCAATTGTGTTGTGTGACAATGAACCGCATAGTGCATATCGTAGTTTTAGGTGTACTACTATTGACGTGCTGTATAGCCGACGAAGTTATTGAAACAGTAGAAGTCATTGTGGGACACAGCGCAGAGCTTCCTTGCAATGTCACAGCCAAGAACGAGAATGACAGACTAAGCATATTGGCCTGGTATCGTAATGAATCTGCGGTGGCTTTCTATAGTCGCGACCTCCGTGACGGTGCAGAAAACAGCAACCCATCTCCCGACAGTCGATACCGACTTGTTACTTCAGACTCTGAAGTCATGGATAAGCTGCAGATTGTAACAGTACGACCATCAGATGCGGGTCTCTATCACTGCCTCGCGGACTTCGAGTTCAGCCCTGCTCACAAGACTAACGTGCAGTTAGTGGTTATTGAGCCTCCACGTCACTTGTGGGTGATCCACGAGAACGGAACTCAGGTAGCTAAAGCAAGCGCAGGAGTCAACGTCAGTAGGAATGTGGGACCATACTACGTGGGAGATACAGTACATCTATTTTGTGTCGCCTTTGGTGGGAACCCTCAGGCGACACTATCCTGGTGGACAGAACAACGCCTCCTGAAGAACTCATCGACAACACTCTCAGAGCAACGAGTTCGCACTAACATAATGTTCGGTCCTCTCCGGCGTGAAGACCACGGCCGCGTACTCACCTGCTACGCAAAAAATAATGAAAGAACGAAGCCTCTTTCAATAGACATTATCATAAACATGCTCTTGCCTCCGGAACTTGTATCTATACGGGCTGAGGGGGCGTTTACTTCGGGCGGCGTTGAAGGCAGAGTGCGAACTGGAGAAGCCATAACATTGCAGTGCAGAGTAATTGGGGCACACCCCCCACCCCCACTGCTGTGGAAGCTTGACGATTCGAAGCTTGTAAATTTAGAGCAGAACATAACAATGGAGCCTTCGCAGCGCTTAATAGTTAGTGAGGTCCAATGGACAATAGACCGTCGGTACGACGAATCCCGCGTGACGTGCTGTGCCCTCAACTACCAAAGAGGAAATGACACCTTCGAATGCGCACAAGGAATACCTCTGATTGTTTTGTACCCTCCAGTTGTAGAGATTATTGTTGAAGGAGAATTAAATAATAATACTTTGGCTGTTGCAAAAGGCTCTAACGTAACGCTTGCTTGTAGCTATCTAGCTAATCCATCTGTGGACCAAATAATGTGGTTTCATGAGGATGCCGTACAAGGCAATGAAGGTGAGGTAACTGATAAACTACACCCGATTTTGGACCTGAAGAATATATCTGAGAGCGACGCCGGCAAATACATGTGTACCGCACATAACGAAGAGGGGTTCACAGACAGCGAACCGATTTTTATAGATGTCACGTATCCAGCTTACTGTGAAAATTCAATGATAATAGAATACGGTTTGGGCGATGAGGAGTCTATAAATATGACGTGCAATGTCAAAGCAAATCCAGAGCCAATCTCATACCGTTGGATTTCGGTCAACGCAGCCGCGAACATCACTACGCTGCGCAACCATCCCCAGGTTATGAAGGAAACAGATGAACCAATATTGGTTTATGAACGACCAAATAACACAGCGTACAGTACAGTATTTTGTTGGGGTCTCAACGGTGTGCCTGATAAGGAAGCCACGCAAACCCCTTGCACGTATTTAGTAACAGATGAAACGATCCCACGACCGCCTTCTAATTGTGAAGCTTTGATAACTGAAACAAGAGACATTATTGTTAACTGTGAGAAGGGTCACAGCGGGGGATTGCCACAGCGCTTCAAGTTTTTCGTGAAAGAGGAAGACACAGATAAACTCATAATATCCATTGTGAGTACAGAACCGGAATTTAAAATAGCGGAACCGAAGCAAGAAAGATACAAGTTTACTGTAATTGCAGTAAATGACAAAGGGGAAAGTGATAGTGTAGAAATTCTTAAAGAAGACATCATTAATAACATTCCAGACCCGGATCAGCCCCAGAGCGCTGTTGCGAACATAACGACGCTATCCCTGGCGCTGTGCGGCGGCGTGGCGCTAGTGGCGCTGGCGGCGTGCGGGCTCGTGCTGTGCGCGCACGACCGCGGCTCCGCGCTCGACCTGCCGCGGCCGCACTCGGACCCGCCGCTCTGCGCCTACAATACTGAAGAATCGAACTGCGAGACTTACCACGGCAGCGAAGACGGGAGCGAGTGCAACGTGAGACGCACGGAGTCGTTCCGGCGAGCCGTCTCGAGGTACCCGTCGAAGAATTTCGACGTGAGGAGAACGAGCTCGTTCCATTCGGCGCGCTACGCGAATGATACCGAGCCAGAACCTTCGAGCAAGTGCAACGACGTCATCCGCTACGGGAACAACTGCAGAGTGCACTCGCTACAGAACATCAGCAGGAAGAGGGACACGGATGCCTTGTGCGATCATTTAGTTCTACATCTGCCGCCGGAAACGAGCTACGGTGTTCCTAAGCCGATGAACACGTTTTACACGATACCGCGTAAAACGAGGCAAAAACAAAGCAGGGAACTGAGCGACGAGACTTCCGAAATAACTCAAACGTCCGACGGATTTTCGTTGCCGCCCCCGCCGGACGAGTTCGGGACCTACAGGGCCGCAACCAGGATCCGGGATATACCGAAAGCCACGCCTACATACACGACGGTCGTAAAGAAGAACTCCACCGGAAAGGAGCCAGTCAAATATCAACAGTACAACGATGCGATATCGTCAATGAACACTGTCGGAGTCGTGCCGACAATTAGCGCGACGCAAGCGAGCGTGTACACGTATCCTGACGACGACCACCGCGGGCACCAGGAAACGCCGAGCACTCTCGGAACCGCTAGCGTCATACCCACTTACAAAGCTTATTTTACCCCAAGAGAGTGCGGACTGTAA

Protein

MHARKLTVTLTQLCCVTMNRIVHIVVLGVLLLTCCIADEVIETVEVIVGHSAELPCNVTAKNENDRLSILAWYRNESAVAFYSRDLRDGAENSNPSPDSRYRLVTSDSEVMDKLQIVTVRPSDAGLYHCLADFEFSPAHKTNVQLVVIEPPRHLWVIHENGTQVAKASAGVNVSRNVGPYYVGDTVHLFCVAFGGNPQATLSWWTEQRLLKNSSTTLSEQRVRTNIMFGPLRREDHGRVLTCYAKNNERTKPLSIDIIINMLLPPELVSIRAEGAFTSGGVEGRVRTGEAITLQCRVIGAHPPPPLLWKLDDSKLVNLEQNITMEPSQRLIVSEVQWTIDRRYDESRVTCCALNYQRGNDTFECAQGIPLIVLYPPVVEIIVEGELNNNTLAVAKGSNVTLACSYLANPSVDQIMWFHEDAVQGNEGEVTDKLHPILDLKNISESDAGKYMCTAHNEEGFTDSEPIFIDVTYPAYCENSMIIEYGLGDEESINMTCNVKANPEPISYRWISVNAAANITTLRNHPQVMKETDEPILVYERPNNTAYSTVFCWGLNGVPDKEATQTPCTYLVTDETIPRPPSNCEALITETRDIIVNCEKGHSGGLPQRFKFFVKEEDTDKLIISIVSTEPEFKIAEPKQERYKFTVIAVNDKGESDSVEILKEDIINNIPDPDQPQSAVANITTLSLALCGGVALVALAACGLVLCAHDRGSALDLPRPHSDPPLCAYNTEESNCETYHGSEDGSECNVRRTESFRRAVSRYPSKNFDVRRTSSFHSARYANDTEPEPSSKCNDVIRYGNNCRVHSLQNISRKRDTDALCDHLVLHLPPETSYGVPKPMNTFYTIPRKTRQKQSRELSDETSEITQTSDGFSLPPPPDEFGTYRAATRIRDIPKATPTYTTVVKKNSTGKEPVKYQQYNDAISSMNTVGVVPTISATQASVYTYPDDDHRGHQETPSTLGTASVIPTYKAYFTPRECGL

Uniprot

H9JBH8 A0A2A4K4R7 A0A2H1VYQ2 A0A2A4K5D9 A0A194PK22 A0A3S2NBW9 + More
A0A212EN59 A0A194RCQ6

Pubmed

19121390 26354079 22118469

EMBL

BABH01030916 BABH01030917 BABH01030918 NWSH01000130 PCG79237.1 ODYU01005260 + More
SOQ45937.1 PCG79236.1 KQ459606 KPI91440.1 RSAL01000254 RVE43448.1 AGBW02013719 OWR42916.1 KQ460398 KPJ15055.1

Proteomes

UP000005204 UP000218220 UP000053268 UP000283053 UP000007151 UP000053240 + More

PRIDE

H9JBH8

Pfam

PF08205   C2-set_2        + More
PF13895   Ig_2
PF07686   V-set

Interpro

IPR007110   Ig-like_dom        + More
IPR003599   Ig_sub
IPR013162   CD80_C2-set
IPR013783   Ig-like_fold
IPR036116   FN3_sf
IPR003598   Ig_sub2
IPR036179   Ig-like_dom_sf
IPR013106   Ig_V-set

SUPFAM

SSF48726 SSF48726 + More
SSF49265 SSF49265

Gene 3D

2.60.40.10

ProteinModelPortal

H9JBH8 A0A2A4K4R7 A0A2H1VYQ2 A0A2A4K5D9 A0A194PK22 A0A3S2NBW9 + More
A0A212EN59 A0A194RCQ6

PDB

4OFY E-value=1.20569e-09, Score=155

KEGG

101735369 no KO assigned | (RefSeq) neural cell adhesion molecule 2-like

GO

GO:0016021 GO:0005515 GO:0006508 GO:0008270 GO:0004180 GO:0006207 GO:0046872 GO:0004088 GO:0006541 GO:0016812 GO:0016597

SignalP

Position: 1 - 37, Likelihood: 0.516576

Length:

979

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.2645999999999

Exp number, first 60 AAs:

16.82541

Total prob of N-in:

0.79582

POSSIBLE N-term signal

sequence

inside

1 - 20

TMhelix

21 - 40

outside

41 - 979

Pi

218.100753

Theta

176.043537

Tajima's D

0.509181

CLR

0.599788

CSRT

0.515774211289436

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics