SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05720
Pre Gene Modal
BGIBMGA006818
Annotation
PREDICTED:_nucleosome-remodeling_factor_subunit_NURF301_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 4.014
 

Sequence

CDS
ATGTCAGGAAGGGGGGCAAAAAAACGCGGGAGGCCCCCAAAATCTAGTAGTTTTGAAAAAAATAGAAAATTCCAATTTCATTTATTGAAAAAACCAAAATATTTGCAACAAAATGCTGTGAACACTTCTATGATAAACACTCCGTCGGCGTCTAGAGCTTCTTCACCTCAAGGTAGTGATATTAGCAGAAGAAGTACGAGAAAGCGAAAAGATCGTAAAACACATAAAAGTAAAAGAGGCGGAATATCCAATTCTTACTCGAAACGGGGTTATAATCCACAGGCAGCCGATTACCATGAATCTGAATATCATTACGGTTCTGACTTTGGTGATGAGTATAGTGACAAATCCGAGCTCGAAGAAGAGCGCGGTAGTGAAAGTTCAGAAGGAAGCGAAGATGGTGCGGCGACCGATAGTGATTTTTCTGTGAGCAGCTTTAGTACAACGAGTGGAACACCGCGAAAAACTAATACTATAACAAACAGACCTCCCAGTCCTGATCCATTGTGGTTGCAACAAGGAAGACAAATTCCACCCTTAGATTTACCACCTTCATCAGATGATCTAATTATACCCCAAAATTTAGTCTTTCAAGTTGTAAGTGTATATGAAGTTTTGCGACATTTCAGACACTTAGTAAGACTGTCTCCTTTTCGCTTAGAAGATCTTTGTGCTGCTATAAGCTGTGAAGATCAAAGTAACTTGCTGATTGAAGTACATATGATGCTACTTAAAGCATTGCTACGTGAAGAAGACGCTCAACAGACTCATTTTGGACCTTTAGATCACAAAGACAGTGTAAACATTACATTGTTCTTATTAGATGTCATGACATGGCCAGAAGTTCTTAGAATTTATGTGGAAAGTGATAAAGTTTTTGATCAAAATGTGATTAAAATTTTAAACAGTTGTGAATATCCATTTACTTCAGTAGAAAATCGTTTAACAGTTCTTCAGTTTCTGTGCAATCAATTTTTAATAACCAATCCTGTCCGTGATGATCTGTTAAGTGAAGTTCCAATACATTATGATGATCACTGTAGAGTGTGTCATCGCTTGGGTGACCTTCTGTGCTGTGAAACCTGCCCTGCTGTATATCATTTAGAGTGTGTGGATCCTCCTTTACTTGATGTACCTTCTGAAGACTGGCAGTGTGCTTTGTGTAAGCAGCATAAGACTGTTGGTGTAACTGATTGTCTTCCTGATGCTGAGAAGCAAGGTCTATTATGCCGTCATGAACATTTGGGATTTGATAGACAGGGCAGAAAATACTGGTTCATTGCAAGGAGAATATTCGTTGAGTCTGAGAATGGTCAAGTATGGTACTACAGTACTCCTCAACAGTTTGAAGAATTGTTGAATGTTCTCGACTCGGAAGAAATGGAAACACCATTAGTTCGTGAACTATTAGAAATGAGGCAAGAAATTTTAAGGCAAATGGACATAACAGAGAGTCTAACTAACCAAATGAAAGGAAATCGGAAATCATACTTAGAAGCTGAAAAAACAAATGTCATCAAACAAAAAAAAAATAGGTCTGAACACAAGCACCAAGACAATAATCCACAATTAAAAGTGGATGGAAAAATTGATAACCTACCCACAATGGATAGTGATGTGTTAAATGAAGTGACTATTATGAGTGAGGATTCTCAAGATAATAATGATATAGAACAGGAAGAGTCAACAGATGAGGATGATGACAAAAAGAGTATTAACCAGTTAATATGTAAATCTAAAAATATAATTAAAAAAAAATCAGAAGAAGTTTCTGAACGATTAACAAGGCAGAAATCTAATCAAATGTCAAATGGAACATATTTATTCAAATTAGGAAATGAAAATAATTTTAAGACCTACATTAACCAGTATGCAAGCAATTCTCTGGCTTTAAATAAACCTCAAAGAAACGAGGAAAGGGACAAAAAACGCTATATGTCACATAAGTTTTCTCTATCTTCTACTCAAGAGTTCAAATGGGTTGGTCTTCTGAATGCAACAAAACCATTCTTGGTTGCAACTTTGAGACAGACTCTGCTGCAGTTAGAATCTAATATTGTGCTACAGTTTATGCATCCAAATTGGTCTTTATTGAGAAAACCATGGGTACAAGCAGTCCAACTTTGTCAAGCACCACGTGACTTCTCAAGGGCATTGTGTGTGCTACAGGCTTGCATTAAAAATGTTGTATGGGTACCGGCATGGCATGAACAGCTGGGTCATGTTAGGCTTATACGCACGACTGCTGCTGAGCGTGAAGAACGAAAAAAACTAGATAAAAGAGAGAAAAAAGAGAGAGATGAAGAAGAAGAGCGTTATCGCACCGCCTACAATTTCGTAAAATATTCTCTTGGTCTTCGTCATCAGGTTTGGAAGCAGAAAGGAGAAGAATACAGGATTCATGGTCAGTGGGGTTGGTTATGGAATTCTGCAACTAGAAAATACAAAAAGCATAATTTTACTATCAAACCAACACTAAGCAATGGTCCAACCAAAATAGCAGTAAGAGTGAGAGAAGGCAATGTGACTAAAATTTTAGCCGTTGAACCTAAAACATATGAATACTTAATTTCCAACGGAAATAATGAAAACAAAGATGTAACGGAAAAATTACCACCATCTATGCGTAACCTTGTGATTCAAAAAGAAGACGATACCACTTTTGAAGAGATAGATGTTGAAAAAGCATTAAGCTCTTCCATAAGAAGATATTATCCTAAAATTGCTAAAAAATCTCGATTAGACGACTTCTTAGCACGACGAACTTATCTTAAATTTATGGAAGAAAAGAAATTAGCCAATTTATTGCAAAATGTTAAAAAAGAGAATACTAATGAAAAAAATGAAGATGACAAAAATATTGATATCGAAAATGAAGAGCCAGAACATGACATTTCTACTATTTGTGACTCAAGTCAATTTGTAAAACCAAACACAAAAAATGTTGATGTTCTTAGAGAAAAGTATCAAGAACTATCACAAATAACAAAACACTACAAATGCTATTCTCAAACTTGTAATAAAATTGAAAATTTATCAAATTTTAACATTAATGCAAAGGTCGATTGTTACTCGCCTTTATGTATACTGAAGTTTAAACTTATAAACGAACTTGTAAAACTTTTAAAAAGTGATGTAATAAATTCTTCCAATATTTTTGAAAATTCTAAAGATTCTTCAAAATTCTCGATATTGGAACAATATCTCCTTGGTAAAAGCTCATCACAGCATAATTCTAATGATAAAATCTTAACAGATTTACTATCTGCTGTAGCATGTGCTCAGGAATATGATAACAAAAATAGCGACAGTTTTGTCAAGAGAAAGTTAAGTAATAATGATTCTGATGTTAAGACAGAAAAAACGGATGTTTTTGAAGATATCATTAAAACTGAGAGTACCTTAGAAGAGTGTGCAGTGCCGGCTGTCGGAAATGAAATGGATATTGATATTACATCTTGCAACAACGAAAATGAGATGGAAGTTGGACCATTAAAAGAGCTGACTGATAGTGAGCAACATAATGTTTCTGATACCGATAAGACGCGCCCTCCAATTCCGAAACTAAAAATATCTAGAGGAAAATCATCCAAATCGTCTAATACTACAAAAAATGAGACTAAAGATTCTTCATATAATTGTTCTTTAGCACAAATAAAAAGAGAAGAAAAAGCGAAGTATCGTGCATCTGTCAATAGAAGATTTGGTGGAGTAAAGACTTTTAAAAGAGAAGAGAAAAGCTTAAAGTCCGAAAAAAAAGAGGGTGAAGTTGTCAGGATATATTCAGCCGAGTCTCCAAAGGGCAAAATTTATTTGAAAAGGGTGCAGACCACTGCTGTTGAAAAGAAAAAGAAACGAACTCCAGTAAAATACCCTTTGTGCTCTACATTTCACACTCGCAGTAAATCAAAAACAATAATGGTGTTACCTCATCATGAGTTAAGGAAACTATGCAGGCAGGCGGGGCATAGTAGTATATCTGGTTTCAGTCACAATGCAAAACCTAATCAAGGTGTTTGGCCTTATCCTTGCCCTAGACCATTATTTAAAACATGCTGGTTGTATAGGACGGTGAATTTGCAATGGCTCGCCAGTGCTGCTTTACAATTACGTATTATGTGGGCGTGTTTAAGATGGGATGATATGGCTGCTAAGCCAGCTACTGCAGACGGTAAACACCAATTAACCACCGATACAGAAATAGTTTCTTTAGAATTGCTAAAACATCGTCATATGGGACAATTTTCTGAACACACTCAATATCTGCGAAGACGTGTCGTGATACCTCTGGAATTGCCCAAGACTGTACGAGAAGTAACATCTATTCGTAGCGGCTTAAGAAAAAGAAAACGCGCAGAATCTCCTCAAAATACTGAACCACAGGTCTCTGAGGAGTGGGTGGATGAGGACAAATTGGAATTATGGGAAGTCCGTCAATATGGTGAAAAAAGCGATCGCGGAACTCCTGTAACGCGCACATCAACTGGCAAGCTGCCTCACAGAAACATTGCACCTCTACCAAATGCGTCTGATCTCAAAGATAAAATGGAGCAACAACTACGTGAACAGCGAGCTGCACATCAGCAGAAAAGAGCCTTAGAGATGTCCCAAGAAAAAGTAAAGTCTACTCCAAACCAAACAACTGGAAAAAGTACTCTTACTTCTTTATTGTCAACAAATGCTACAACACCTACTGGACAAAAAACCGTTATAGGCACTAGAAGAATAATTATGACAAAAGGAGCTGATGGTTCTACACGAGTTATTAGTCAATCCATTTCGAGTAAAGCAGGACTGGATGGAAATAAATCAGCCACACCACCACCTAAAGATGGACCACAAAAAGTTCAAATTATTCGGGCTCCAGATGGTAAAATTACCGTAAAAGGATTGCTTCCGGGACAACAACTGATACAAATGGCAGATGGTAAATTACATGTTGTCACGGCTGGACAACAAGGCATCACAGGTCAGTTAGTGGCAGCTTCTCCTCCAATAAAGAATACGGAAATAACACAGAGTAAGTCGGAAAATAAAGTATCCAGTACGACAAAGAATTCCAACGAAGAGACGCGATCGACGTCTACGCCTCGCATTGCACCTTCGTCAACTCCGCAGCTAGTCGTTCAGGGCGGGCGCCAGCTAGTCGTCCAACCGTCGCAGCAGATGGTCGTGCAGTCACCTCAACAGGTGGTAGTTCAGTCTCCGCAACAGATGGTCGTCCAAGCGGGAATCCGCCCTAACATCCAGCCGCGTGTACAGCCTCTCAACACTGTGGTAGTACAGGGACAGCTAATGCAGCGAGCTGTTGCGCCCCGGACGCCAGTAGCGTCGCGCCCTCGTCCGGTCTCCACGCAACAAATAGTCGTCAACAATCCTGCTTTGGTTCAACAAATAGCTGCCGGCAAAATACAGCTAGCTACTGTCAACGGACAGCAGGTTCTGATTCGTCCGACTGGCAACAATCAAGCTCAAATAGTTGCACACATTGGTCAAAGTCCAGCGCCGCGCCAGCCGCCGCCCGTAGTCGCTCCGGCGCCGATTCCTGTGGCGGCGCCAGTTTCGATTCCGGTCCCTGCGCCTCAACCCGTACCTGCACCTACACCACAACCTCTCACCGAAGATGAAATAGTTGAAAAACGACTATTGGTTGGTCAGCCACCCGGGACTGTTATAAAAACTGTCACTGCTCAAGTCATGCAGACGAGTAGCGGACCTAGCATCGTTCTGCAAGGTCTTCACGGCTATAATTTGAATCCCCAACAGCTCGCCCTCGTTCAGCATCAAGTGAAACAGCAACTCTTGAAAGCCCAAGAGTCAACGGGTAAGCAAGGAATGCTGGGTCCTCGCAAGATGTATCTGGCGGTGCAGCCGGCCAACAGCGCGCCGCCGCCGCTAGCACCCGTCGCCCATCCGCTCGCGCCGCAGGAAAATAATGATCCAAAACGACAGGCGCTTTTGAATGGCGAAGACAATGTAGCCGATGCTGCCGTTCACAAAGAAGCGACTCCATTTAAACAGGAAGATATTAAAGAGAATAGCACTAAAACTGACTTAGTTAATGCTAACCAAGATCGTTTGCAAAGTAACAAATTCGTCCTCACACCTGACTACATTCAACAAACTATTAAAAGCGCATTGAAACAAGAAAATCTTAATCCCGAAATCGAAGAAAAACTTCTTCAACTCCAACGGTATCAAGAGAGGCGTATGAAACCGGAAGTACCCGTAGAAAAAGAACCACGTCCGCCGGCTCCGCGGTCGCCGTCGCCGCCTGCACGGCGCCGGGCTACTTCCCGCCACGACGACGACGAAGAGTGGGTGGAAAGTAGCCCGCGGAAACGGACGCGGGCGTCGCGAGCTCTGTCCCCGGCGCCTCCCGAGCCGCCGCGCACCGTGTCCGCGCCTGCACCCGCGCCTGTGCCGGCCCCTGTACTAACGTCTGTACCGACGCCCGTACCCGCCTCCGTACCAGCGGCTGTGCCCGCGCCGGTCTCCACGCACCTCGATGAACGACGCCGGACCGCCACCAACAACTCTCGACTTCAAATGCTTCTGTTTAAGCACAAGGAATTGCTAAAAAAAGACATTATAAAGAAAAGAGGTTTACTCGAAAAAGAACTTGGAATCGAAATACAGAAAGAACTATCGGCTGAATTGGCGTTGCGTACGCGGGCCGAACGCAACAAACAAGAAGAAGTGCGCGCTAAAAGACGTGCCACTGTTACGCCTTCAACACCTAAGCAGACCAAACGAACTAATAAAAAAGAAAAATTACTTTGTATCTGCCGTACACCTTATGATAATACTAAGTTTTACGTAGGATGCGAACACTGCAGTAATTGGTTCCACGGTGACTGTGTCGGTGTTACTGAAGAAATGAGTAAAACTATGGAGGAATATGTTTGTCAGGACTGTAGACGTGCTGAAGAAACACAAGAGCTTTACTGTCTCTGTAGACAACCCTACGATAATTCACAATTTTACATATGTTGTGATCGGTGTCAAGATTGGTTTCATGGCAGATGCGTCGGTATTCTACAGTCCGAAGCCGACAATATCGATGAATATATTTGTCCGAATTGTCAGAAAAACAATTCTGTCAATTTCGCAAACATGAAGGAGTTAACTCACAAGGATTTTGAAAATTTGAAGAGGCTAATAAAACAAATCCAATTACATAAAAGCGCTTGGCCTTTCATGGAACCTGTGGATCCTAGAGAAGCACCAACGTATTATAAAATTATCAAAGAACCAATGGATTTGCAAACAGTGGAACGAAAAGTGAATGAACAAACATATAGTATGTTAAGTGAATTTATTGGTGATATGACTAAAATATTTGATAACTGTCGATATTTTAATCCAAAGGATTCTGAATTTTATCGATGTGCCGACGGATTAGAAGCATTTTTTGCACAAAAAATCAAGTATTTTCGTGAAAAACTATTTGAAGCTAATCAATGA
Protein
MSGRGAKKRGRPPKSSSFEKNRKFQFHLLKKPKYLQQNAVNTSMINTPSASRASSPQGSDISRRSTRKRKDRKTHKSKRGGISNSYSKRGYNPQAADYHESEYHYGSDFGDEYSDKSELEEERGSESSEGSEDGAATDSDFSVSSFSTTSGTPRKTNTITNRPPSPDPLWLQQGRQIPPLDLPPSSDDLIIPQNLVFQVVSVYEVLRHFRHLVRLSPFRLEDLCAAISCEDQSNLLIEVHMMLLKALLREEDAQQTHFGPLDHKDSVNITLFLLDVMTWPEVLRIYVESDKVFDQNVIKILNSCEYPFTSVENRLTVLQFLCNQFLITNPVRDDLLSEVPIHYDDHCRVCHRLGDLLCCETCPAVYHLECVDPPLLDVPSEDWQCALCKQHKTVGVTDCLPDAEKQGLLCRHEHLGFDRQGRKYWFIARRIFVESENGQVWYYSTPQQFEELLNVLDSEEMETPLVRELLEMRQEILRQMDITESLTNQMKGNRKSYLEAEKTNVIKQKKNRSEHKHQDNNPQLKVDGKIDNLPTMDSDVLNEVTIMSEDSQDNNDIEQEESTDEDDDKKSINQLICKSKNIIKKKSEEVSERLTRQKSNQMSNGTYLFKLGNENNFKTYINQYASNSLALNKPQRNEERDKKRYMSHKFSLSSTQEFKWVGLLNATKPFLVATLRQTLLQLESNIVLQFMHPNWSLLRKPWVQAVQLCQAPRDFSRALCVLQACIKNVVWVPAWHEQLGHVRLIRTTAAEREERKKLDKREKKERDEEEERYRTAYNFVKYSLGLRHQVWKQKGEEYRIHGQWGWLWNSATRKYKKHNFTIKPTLSNGPTKIAVRVREGNVTKILAVEPKTYEYLISNGNNENKDVTEKLPPSMRNLVIQKEDDTTFEEIDVEKALSSSIRRYYPKIAKKSRLDDFLARRTYLKFMEEKKLANLLQNVKKENTNEKNEDDKNIDIENEEPEHDISTICDSSQFVKPNTKNVDVLREKYQELSQITKHYKCYSQTCNKIENLSNFNINAKVDCYSPLCILKFKLINELVKLLKSDVINSSNIFENSKDSSKFSILEQYLLGKSSSQHNSNDKILTDLLSAVACAQEYDNKNSDSFVKRKLSNNDSDVKTEKTDVFEDIIKTESTLEECAVPAVGNEMDIDITSCNNENEMEVGPLKELTDSEQHNVSDTDKTRPPIPKLKISRGKSSKSSNTTKNETKDSSYNCSLAQIKREEKAKYRASVNRRFGGVKTFKREEKSLKSEKKEGEVVRIYSAESPKGKIYLKRVQTTAVEKKKKRTPVKYPLCSTFHTRSKSKTIMVLPHHELRKLCRQAGHSSISGFSHNAKPNQGVWPYPCPRPLFKTCWLYRTVNLQWLASAALQLRIMWACLRWDDMAAKPATADGKHQLTTDTEIVSLELLKHRHMGQFSEHTQYLRRRVVIPLELPKTVREVTSIRSGLRKRKRAESPQNTEPQVSEEWVDEDKLELWEVRQYGEKSDRGTPVTRTSTGKLPHRNIAPLPNASDLKDKMEQQLREQRAAHQQKRALEMSQEKVKSTPNQTTGKSTLTSLLSTNATTPTGQKTVIGTRRIIMTKGADGSTRVISQSISSKAGLDGNKSATPPPKDGPQKVQIIRAPDGKITVKGLLPGQQLIQMADGKLHVVTAGQQGITGQLVAASPPIKNTEITQSKSENKVSSTTKNSNEETRSTSTPRIAPSSTPQLVVQGGRQLVVQPSQQMVVQSPQQVVVQSPQQMVVQAGIRPNIQPRVQPLNTVVVQGQLMQRAVAPRTPVASRPRPVSTQQIVVNNPALVQQIAAGKIQLATVNGQQVLIRPTGNNQAQIVAHIGQSPAPRQPPPVVAPAPIPVAAPVSIPVPAPQPVPAPTPQPLTEDEIVEKRLLVGQPPGTVIKTVTAQVMQTSSGPSIVLQGLHGYNLNPQQLALVQHQVKQQLLKAQESTGKQGMLGPRKMYLAVQPANSAPPPLAPVAHPLAPQENNDPKRQALLNGEDNVADAAVHKEATPFKQEDIKENSTKTDLVNANQDRLQSNKFVLTPDYIQQTIKSALKQENLNPEIEEKLLQLQRYQERRMKPEVPVEKEPRPPAPRSPSPPARRRATSRHDDDEEWVESSPRKRTRASRALSPAPPEPPRTVSAPAPAPVPAPVLTSVPTPVPASVPAAVPAPVSTHLDERRRTATNNSRLQMLLFKHKELLKKDIIKKRGLLEKELGIEIQKELSAELALRTRAERNKQEEVRAKRRATVTPSTPKQTKRTNKKEKLLCICRTPYDNTKFYVGCEHCSNWFHGDCVGVTEEMSKTMEEYVCQDCRRAEETQELYCLCRQPYDNSQFYICCDRCQDWFHGRCVGILQSEADNIDEYICPNCQKNNSVNFANMKELTHKDFENLKRLIKQIQLHKSAWPFMEPVDPREAPTYYKIIKEPMDLQTVERKVNEQTYSMLSEFIGDMTKIFDNCRYFNPKDSEFYRCADGLEAFFAQKIKYFREKLFEANQ

Summary

Pfam
PF15612   WHIM1        + More
PF00628   PHD
PF00439   Bromodomain
PF02791   DDT
PF15613   WSD
Interpro
IPR036427   Bromodomain-like_sf        + More
IPR019786   Zinc_finger_PHD-type_CS       
IPR018501   DDT_dom       
IPR011011   Znf_FYVE_PHD       
IPR038028   BPTF       
IPR028942   WHIM1_dom       
IPR001487   Bromodomain       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR018359   Bromodomain_CS       
IPR028941   WHIM2_dom       
SUPFAM
SSF57903   SSF57903        + More
SSF47370   SSF47370       
Gene 3D

Ontologies

Topology

Length:
2488
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00076
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00004
outside
1  -  2488
 
 

Population Genetic Test Statistics

Pi
236.619819
Theta
209.752069
Tajima's D
0.580252
CLR
0.293979
CSRT
0.534223288835558
Interpretation
Uncertain
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