Gene

KWMTBOMO05719  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006819

Annotation

nuclear_excision_repair_protein_rad23_[Bombyx_mori]

Location

Bomo_Chr10(-):8726633-8727805      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.662 Nuclear   Reliability : 2.325

CDS

ATGTTGGTGACGCTAAAAACTTTACAACAGCAAACATTTCAAATTGAAATAGATCCAGAAGAAACTGTGAAAGCATTGAAGTTAAAAATTGAAGTGGAAAAAGGGAAGGATTTTGTCGCCGACCATCAAAGACTTATTTATGCGGGAAAAATTCTTCTGGACGACAACAAAATAAATTCTTACAACATAGATGAAAAGAAATTCATTGTTATTATGGTTACAAAACCTAAAGTCTCCGAGAGCCAGCCTACATCAACTTCCATACCCGAAGCAGGCGAAAGTGCTTCTACTGATAGTGGTGATGCTAAGCCTAAGACTGTTCCTCCTGAAGAAGTAGTCAAGCCTACTACAGCAGAAACTGAGCGAGTTACCGAGACTCCCAACACCACTAGTGATGCTGAGTTAGAAGCAACTATCCAAAGTATTATGGATATGGGATATGATAGGCCACAAGTTGAACAAGCATTACGCGCCTCATTTAATAATAGAGAAAGAGCTGTAGAATATTTAATAACAGGTATTCCTGAAGAATTGCTACATGAACAAGAAGCTGAAGAAAGTTCTGATGAAGACCCATTAGCCTTCCTGCGAGATCAACCACAATTTCAGCAAATGCGTGCTGTTATACAACAGAATCCCAATTTGTTAAATGCTGTGTTACAGCAGATTGGTCAGACAAATCCAGCTTTATTACAAGTAATCAGCCAACATCAAGAAGCCTTTGTCAGAATGTTAAATGAACCAGTGAACCCTTCTGCTGCGGGAGTAGCATCAGATGAGAATGTTGCTGATATTCAACAACCTCAATTAGGGTCACAGAATGTTATTCAAGTGTCTGCTCAAGATAAAGAAGCTATTGAAAGATTAAAAGCTCTTGGTTTTCCTGAACATATGGTGATACAAGCCTATTTTGCTTGTGAAAAAAATGAGAATCTTGCAGCTAACTTTTTGCTGTCTCAGAATTTTGATGACTAA

Protein

MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDEKKFIVIMVTKPKVSESQPTSTSIPEAGESASTDSGDAKPKTVPPEEVVKPTTAETERVTETPNTTSDAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLITGIPEELLHEQEAEESSDEDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFDD

Uniprot

D2CZY1   A0A2H1W996   A0A212F6W6   S4PSE1   I4DMW4   A0A194RB73   + More
A0A2A4JVY6   A0A194PDN1   A0A0L7LRX3   A0A1B6CIE2   A0A067R0X4   A0A1B6LWY5   A0A1W4XKA3   V5GYQ7   A0A1Y1KZB6   A0A2Z5TTG9   E0W1I7   A0A3S3NJN9   I4DJT2   A0A3S3P9H8   A0A2J7PX60   A0A2R7VSW7   A0A0L7QY16   A0A232EKJ9   A0A151JRE9   A0A2J7PX67   A0A195CTQ9   A0A0A9WQU4   A0A158NTT4   A0A2H8TQH5   A0A195FQZ2   V9IGZ7   A0A087ZQI7   E1ZYJ5   A0A139WG70   E2B9B5   A0A069DYN4   F4WJ32   A0A0M9A6P2   K7IN89   A0A0V0G4P2   A0A154P8T0   A0A2A3E5E4   U5EWY4   A0A336LBV4   A0A336LBB9   A0A2P8XWG7   Q201W5   A0A026WK35   A0A3B4TXX0   A0A2L2XWL1   A0A023F8Q3   H3CDK0   E9IPH3   A0A0P4VUW1   A0A3P8XX41   G3NQQ1   W5MMT8   H3B526   A0A060YG13   R4FNL6   V9KU29   H2MPX4   A0A226EJB5   A0A1W7RBR1   A0A195BNK1   F6QX91   A0A3Q2YRV9   J3S9D2   A0A2D4Q2G8   V8PH52   A0A2K5HL37   A0A1D5RC58   G1KTK0   A0A1D2NCK3   A0A3Q1M2P9   T1DHK7   A0A2D4Q0H0   A0A2K6T001   A0A2K5F4X1   W5PJ55   A0A0P4ZVZ4   A0A2K6SZW2   N6U007   A0A061IFL0   A0A1A6HG00   A0A061I8X5   A0A0J7KQV2   A0A383ZAI2   A0A341D8R1   A0A340YBA2   A0A2Y9EK51   A0A2Y9MA48   A0A383ZA23   A0A341D886   A0A340Y7E9   A0A2Y9EKT1   A0A2Y9M533   A0A2D4JZ15   A0A2K5RA67  

Pubmed

19121390    22118469    23622113    22651552    26354079    26227816    + More
24845553    28004739    26760975    20566863    28648823    25401762    26823975    21347285    20798317    18362917    19820115    26334808    21719571    20075255    29403074    24508170    30249741    26561354    25474469    15496914    21282665    27129103    25069045    9215903    24755649    24402279    17554307    26358130    17495919    23025625    24297900    17431167    27289101    19393038    23758969    20809919    23537049    23929341   

EMBL

BABH01030897    FJ194550    ACK38234.1    ODYU01007140    SOQ49651.1    AGBW02009960    + More
OWR49481.1    GAIX01000010    JAA92550.1    AK402632    BAM19254.1    KQ460398    KPJ15073.1    NWSH01000473    PCG76171.1    KQ459606    KPI91456.1    JTDY01000228    KOB78187.1    GEDC01024135    JAS13163.1    KK852822    KDR15532.1    GEBQ01011784    JAT28193.1    GALX01002888    JAB65578.1    GEZM01068837    GEZM01068836    JAV66742.1    FX985748    BBA93635.1    DS235870    EEB19493.1    NCKU01005917    RWS04039.1    AK401550    BAM18172.1    NCKU01005916    RWS04040.1    NEVH01020861    PNF20925.1    KK854066    PTY10592.1    KQ414699    KOC63446.1    NNAY01003783    OXU18873.1    KQ978615    KYN29805.1    PNF20927.1    KQ977279    KYN04076.1    GBHO01033490    GBRD01011300    GDHC01011717    JAG10114.1    JAG54524.1    JAQ06912.1    ADTU01026149    GFXV01004435    MBW16240.1    KQ981382    KYN42324.1    JR043421    AEY59771.1    GL435225    EFN73749.1    KQ971346    KYB26998.1    GL446479    EFN87721.1    GBGD01002085    JAC86804.1    GL888181    EGI65802.1    KQ435724    KOX78340.1    GECL01003118    JAP03006.1    KQ434846    KZC08315.1    KZ288386    PBC26476.1    GANO01001198    JAB58673.1    UFQS01003160    UFQT01003160    SSX15288.1    SSX34663.1    UFQS01002509    UFQT01002509    SSX14191.1    SSX33607.1    PYGN01001243    PSN36350.1    ABLF02024960    DQ413221    AK340368    ABD72689.1    BAH70991.1    KK107167    QOIP01000010    EZA56412.1    RLU17604.1    IAAA01003349    IAAA01003350    LAA00187.1    GBBI01000947    JAC17765.1    GL764522    EFZ17533.1    GDKW01000239    JAI56356.1    AHAT01007626    AHAT01007627    AFYH01054563    AFYH01054564    AFYH01054565    AFYH01054566    AFYH01054567    FR910988    CDQ90828.1    ACPB03000207    GAHY01000538    JAA76972.1    JW869485    AFP02003.1    LNIX01000003    OXA57308.1    GDAY02002885    JAV48582.1    KQ976435    KYM87076.1    JU175584    GBEX01003912    AFJ51108.1    JAI10648.1    IACN01102340    LAB63706.1    AZIM01000122    ETE73212.1    JSUE03020838    LJIJ01000097    ODN02726.1    GAAZ01002883    JAA95060.1    IACN01102339    LAB63704.1    AMGL01091203    GDIP01208939    JAJ14463.1    APGK01054667    KB741251    ENN71857.1    KE672136    ERE79542.1    LZPO01034888    OBS76567.1    ERE79543.1    LBMM01004244    KMQ92671.1    IACL01022614    LAB01693.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000218220    UP000053268    UP000037510    + More
UP000027135    UP000192223    UP000009046    UP000285301    UP000235965    UP000053825    UP000215335    UP000078492    UP000078542    UP000005205    UP000078541    UP000005203    UP000000311    UP000007266    UP000008237    UP000007755    UP000053105    UP000002358    UP000076502    UP000242457    UP000245037    UP000007819    UP000053097    UP000279307    UP000261420    UP000007303    UP000265140    UP000007635    UP000018468    UP000008672    UP000193380    UP000015103    UP000001038    UP000198287    UP000078540    UP000002280    UP000264820    UP000233080    UP000006718    UP000001646    UP000094527    UP000009136    UP000233220    UP000233020    UP000002356    UP000019118    UP000030759    UP000092124    UP000036403    UP000261681    UP000252040    UP000265300    UP000248484    UP000248483    UP000233040   

PRIDE

D2CZY1   

Pfam

PF00240   ubiquitin        + More
PF00627   UBA
PF09280   XPC-binding
PF00281   Ribosomal_L5
PF00673   Ribosomal_L5_C
PF00069   Pkinase

Interpro

IPR000626   Ubiquitin_dom        + More
IPR004806   Rad23       
IPR015360   XPC-bd       
IPR006636   STI1_HS-bd       
IPR036353   XPC-bd_sf       
IPR009060   UBA-like_sf       
IPR029071   Ubiquitin-like_domsf       
IPR015940   UBA       
IPR041811   RAD23A/B_UBA1       
IPR020929   Ribosomal_L5_CS       
IPR031310   Ribosomal_L5_N       
IPR031309   Ribosomal_L5_C       
IPR022803   Ribosomal_L5_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       

SUPFAM

SSF54236   SSF54236        + More
SSF101238   SSF101238       
SSF46934   SSF46934       
SSF55282   SSF55282       
SSF56112   SSF56112       

Gene 3D

1.10.10.540     3.30.1440.10    

CDD

cd14377  UBA1_Rad23

ProteinModelPortal

D2CZY1   A0A2H1W996   A0A212F6W6   S4PSE1   I4DMW4   A0A194RB73   + More
A0A2A4JVY6   A0A194PDN1   A0A0L7LRX3   A0A1B6CIE2   A0A067R0X4   A0A1B6LWY5   A0A1W4XKA3   V5GYQ7   A0A1Y1KZB6   A0A2Z5TTG9   E0W1I7   A0A3S3NJN9   I4DJT2   A0A3S3P9H8   A0A2J7PX60   A0A2R7VSW7   A0A0L7QY16   A0A232EKJ9   A0A151JRE9   A0A2J7PX67   A0A195CTQ9   A0A0A9WQU4   A0A158NTT4   A0A2H8TQH5   A0A195FQZ2   V9IGZ7   A0A087ZQI7   E1ZYJ5   A0A139WG70   E2B9B5   A0A069DYN4   F4WJ32   A0A0M9A6P2   K7IN89   A0A0V0G4P2   A0A154P8T0   A0A2A3E5E4   U5EWY4   A0A336LBV4   A0A336LBB9   A0A2P8XWG7   Q201W5   A0A026WK35   A0A3B4TXX0   A0A2L2XWL1   A0A023F8Q3   H3CDK0   E9IPH3   A0A0P4VUW1   A0A3P8XX41   G3NQQ1   W5MMT8   H3B526   A0A060YG13   R4FNL6   V9KU29   H2MPX4   A0A226EJB5   A0A1W7RBR1   A0A195BNK1   F6QX91   A0A3Q2YRV9   J3S9D2   A0A2D4Q2G8   V8PH52   A0A2K5HL37   A0A1D5RC58   G1KTK0   A0A1D2NCK3   A0A3Q1M2P9   T1DHK7   A0A2D4Q0H0   A0A2K6T001   A0A2K5F4X1   W5PJ55   A0A0P4ZVZ4   A0A2K6SZW2   N6U007   A0A061IFL0   A0A1A6HG00   A0A061I8X5   A0A0J7KQV2   A0A383ZAI2   A0A341D8R1   A0A340YBA2   A0A2Y9EK51   A0A2Y9MA48   A0A383ZA23   A0A341D886   A0A340Y7E9   A0A2Y9EKT1   A0A2Y9M533   A0A2D4JZ15   A0A2K5RA67  

PDB

1QZE     E-value=9.62761e-65,     Score=625

KEGG

100328606    K10839 UV excision repair protein RAD23 | (RefSeq) Rad23; nuclear excision repair protein rad23

PATHWAY

03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0006289   GO:0003684   GO:0043161   GO:0005634   GO:0000502   GO:0070628   GO:0031593   GO:0043130   GO:0005654   GO:0005829   GO:0006412   GO:0003735   GO:0005840   GO:0031648   GO:0005815   GO:1990381   GO:0032436   GO:0045070   GO:0045787   GO:0019900   GO:0032991   GO:0005524   GO:0004672   GO:0005515   GO:0042065   GO:0042066   GO:0003707   GO:0043565  

Length:

324

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000540000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01739

outside

1  -  324

 

 

Pi

111.70781

Theta

183.252594

Tajima's D

-1.560962

CLR

1295.459423

CSRT

0.0527473626318684

Interpretation

Uncertain