Silkworm Genome Informatics Database

Gene

KWMTBOMO05707 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006825

Annotation

PREDICTED:_Golgi_reassembly-stacking_protein_2_[Amyelois_transitella]

Location

Bomo_Chr10(-):8571327-8574031 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.099

CDS

ATGGGCTCCTCACACAGCACTGAAGTTCCTGGAGGTGGAACTGAGGGATATCATGTTTTACGGGTTCAAGAGGGTTCACCCGGCCAAAAAGCTAATCTTGAAGCATTTTTTGACTTCATTTTAGCAATTGAGACTACCAGATTAGACCAAGACAATGACACATTAAAAGAATTGTTAAAAAACAACGTTGATAAACCTATCAAAATGCTTATATACAGCAGTAAGACACAATCAGTAAGAGAGGTAATGATCACACCAAGTGCTAACTGGGGTGGCCAAGGATTGCTTGGTGTTAGTATCAGATTTTGCTCCTTCGAAGGCGCCAATGAAAATGTGTGGCATGTATTGGAAGTACATCCATCATCTCCAGCAGAACTAGCTGGCCTTAGACCATTCTCTGATTATATAATAGGTTCAGATTCTATTTTGCATGAAAGTGAAGACTTATTCACTCTCATAGAGGCTCATGAAGGAAGAGCTCTAAAGTTGTATGTATATAATGCAAATGATGATACATGTCGTGAGGTTCTCATAACACCAAACCATAACTGGGGAGGGGATGGTAGCTTGGGATGTGGCATAGGGTATGGCTACTTGCATAGAATTCCCATAAGGCATAGTCCTCCTACTAACTCTCCACAGCAACTGTACAATCCAGGAATGGTGTCTCAACAAACTTATATTCCACAAAATACAGTATCTCAAAACCAAAAACTAACTGTAAATGATGAGAAAGCCAGCCCTGTTATTAACGCGAATGCTGAAGGGGAACAACAGAATCCCCCTCCACCATTTTTGACCGGAGTACCAATGGTTACCCCTGGAAATTTCCCATCTCCGAATAAGTTTAATGAACAATATTTGCAGTATCCACAGCAAAACTCTATCGAAAACATTGTAGAGCAGCCAACCCAACAGTCACCATCCTCCTCTGCACAGTCTATGGTATCTAACATGGCTGCATATTCTAGTAATTTTGCAGATGCAACATTGACTCAACTTGGAAGCATACCATCAGTATCTAGTATGCAGCCTCCAGCACCACTGCCCAGTCTGCCTGGTATGCCTTCTATAACAGTTAGTGCTACACTTCCCGTTTCAACTATACAAGAAATTCACCAGCAACAATCATTACACCAAAAGCAAGACTTATTATCATGA

Protein

MGSSHSTEVPGGGTEGYHVLRVQEGSPGQKANLEAFFDFILAIETTRLDQDNDTLKELLKNNVDKPIKMLIYSSKTQSVREVMITPSANWGGQGLLGVSIRFCSFEGANENVWHVLEVHPSSPAELAGLRPFSDYIIGSDSILHESEDLFTLIEAHEGRALKLYVYNANDDTCREVLITPNHNWGGDGSLGCGIGYGYLHRIPIRHSPPTNSPQQLYNPGMVSQQTYIPQNTVSQNQKLTVNDEKASPVINANAEGEQQNPPPPFLTGVPMVTPGNFPSPNKFNEQYLQYPQQNSIENIVEQPTQQSPSSSAQSMVSNMAAYSSNFADATLTQLGSIPSVSSMQPPAPLPSLPGMPSITVSATLPVSTIQEIHQQQSLHQKQDLLS

Uniprot

H9JBD0 A0A2H1WDD9 A0A2A4JWU7 A0A194RB82 A0A194PDP0 A0A212F6X3 + More
A0A1E1VYI4 A0A3S2NP42 I4DL25 A0A0C9R9R9 A0A182QH77 A0A3M6TSH1 A0A023GF11 A0A1W4XAN4 L7LXJ2 A0A224YNV8

Pubmed

19121390 26354079 22118469 22651552 30382153 25576852 + More
28797301

EMBL

BABH01030876 ODYU01007904 SOQ51088.1 NWSH01000473 PCG76178.1 KQ460398 + More
KPJ15083.1 KQ459606 KPI91466.1 AGBW02009960 OWR49492.1 GDQN01011267 JAT79787.1 RSAL01000019 RVE52690.1 AK401993 BAM18615.1 GBYB01013154 GBYB01013155 JAG82921.1 JAG82922.1 AXCN02000387 RCHS01003045 RMX44228.1 GBBM01003875 JAC31543.1 GACK01008727 JAA56307.1 GFPF01008140 MAA19286.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000283053 + More
UP000075886 UP000275408 UP000192223

PRIDE

H9JBD0

Pfam

PF04495 GRASP55_65

Interpro

IPR024958   GRASP55/65_PDZ        + More
IPR007583   GRASP55_65
IPR036034   PDZ_sf

SUPFAM

SSF50156 SSF50156

ProteinModelPortal

H9JBD0 A0A2H1WDD9 A0A2A4JWU7 A0A194RB82 A0A194PDP0 A0A212F6X3 + More
A0A1E1VYI4 A0A3S2NP42 I4DL25 A0A0C9R9R9 A0A182QH77 A0A3M6TSH1 A0A023GF11 A0A1W4XAN4 L7LXJ2 A0A224YNV8

PDB

4KFW E-value=3.96984e-90, Score=845

KEGG

101740181 no KO assigned | (RefSeq) Golgi reassembly-stacking protein 2

GO

GO:0005515 GO:0006810 GO:0016020 GO:0006388 GO:0009881 GO:0019226 GO:0042065 GO:0042066 GO:0003707 GO:0043565

PANTHER

PTHR12893

Length:

386

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0055

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00416

outside

1 - 386

Pi

242.964191

Theta

216.867875

Tajima's D

0.424075

CLR

0.164795

CSRT

0.488925553722314

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics