Gene

KWMTBOMO05703

Pre Gene Modal

BGIBMGA006860

Annotation

PREDICTED:_sodium-coupled_monocarboxylate_transporter_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):8547332-8548976      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.952

CDS

ATGCATTTCCATTATGTTCCAATAATATTTACTTTTTTTGAGCACTACACTAATGATATTACCTACTTTTTTTTCGCCTGGATTTCATGTCAACTGTGTACTGTAAGAGCTCTACCAGAATTTACTCAACAAACCAACAACGATACCATAATTGCCTCAATCTGGGACAATGTGGCCTCTGCCAACGATTTATTCCACTGGGAAGACTACAGTGTACTGGCTGCTATGGTTTTTGTTTCTTGTGCTATTGGAGTTTACTATGGGTATTTCGGAGAAAATCAAATGACAGGAGATGATTTTCTTCTCGGAGGATCGTCAATGGGAACATTTCCTACTGCTTTAAGCTTAGCCGCAAGTTTCATCACAGCGATTGAGTTGTTAGGAAACCCGGCGGAGATGTACATGGCAGGCGGTCAATTCTGGATGATTTGTATAGCGTTTATACTTGTTGTGCCGATTACTAGTCGATTGTACCTACCAGTGTTCATGAGACTTCGGCTAACTTCTTGCTATGAGTACCTGGAAGTACGTTTCTGTAAAACGATCCGTATTTACGCGAGCGGTTTATATATGATGCAGATGATATTATATACTGCGGTAGCTGTTTATGCGCCGGCACTGGCACTTTCTGATGAGCGCATTGTAAGCTCGACCGATTAG

Protein

MHFHYVPIIFTFFEHYTNDITYFFFAWISCQLCTVRALPEFTQQTNNDTIIASIWDNVASANDLFHWEDYSVLAAMVFVSCAIGVYYGYFGENQMTGDDFLLGGSSMGTFPTALSLAASFITAIELLGNPAEMYMAGGQFWMICIAFILVVPITSRLYLPVFMRLRLTSCYEYLEVRFCKTIRIYASGLYMMQMILYTAVAVYAPALALSDERIVSSTD

Similarity

Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.

Uniprot

H9JBG5   A0A3S2LFK1   A0A2A4JVV6   A0A212F6Y7   A0A194RC90   A0A1B6DS39   + More
A0A2J7QJS2   A0A1Y1MH80   A0A2J7QJT7   A0A139WI19   A0A1Y1MCD1   A0A2P8Y102   A0A139WI01   A0A0A9ZFM9   A0A0K8V6R8   A0A182NJJ9   A0A0K8VCB8   A0A182WL57   A0A034WNE1   A0A0L0C6R5   B4GS39   Q2M053   A0A1A9ZMT8   A0A1W4VVB7   A0A1A9UXU1   B4KWX0   A0A1B0G5R2   B3NEY0   A0A1A9W4N0  

Pubmed

19121390    22118469    26354079    28004739    18362917    19820115    + More
29403074    25401762    25348373    26108605    17994087    15632085   

EMBL

BABH01030875    BABH01030876    RSAL01000019    RVE52689.1    NWSH01000473    PCG76177.1    + More
AGBW02009960    OWR49493.1    KQ460398    KPJ15084.1    GEDC01008812    JAS28486.1    NEVH01013549    PNF28843.1    GEZM01036474    GEZM01036473    JAV82667.1    PNF28844.1    KQ971342    KYB27602.1    GEZM01036472    GEZM01036471    JAV82668.1    PYGN01001063    PSN37941.1    KYB27603.1    GBHO01038683    GBHO01038678    GBHO01036758    GBHO01036014    GBHO01033555    GBHO01033552    GBHO01005171    GBHO01004442    GBHO01000800    GBHO01000798    GBHO01000793    JAG04921.1    JAG04926.1    JAG06846.1    JAG07590.1    JAG10049.1    JAG10052.1    JAG38433.1    JAG39162.1    JAG42804.1    JAG42806.1    JAG42811.1    GDHF01017687    JAI34627.1    GDHF01015827    JAI36487.1    GAKP01002788    JAC56164.1    JRES01000820    KNC28108.1    CH479188    EDW40574.1    CH379069    EAL31083.2    CH933809    EDW18591.1    CCAG010018755    CCAG010018756    CH954178    EDV50253.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053240    UP000235965    + More
UP000007266    UP000245037    UP000075884    UP000075920    UP000037069    UP000008744    UP000001819    UP000092445    UP000192221    UP000078200    UP000009192    UP000092444    UP000008711    UP000091820   

PRIDE

H9JBG5   

Pfam

PF00474   SSF

Interpro

IPR001734   Na/solute_symporter        + More
IPR038377   Na/Glc_symporter_sf       

Gene 3D

1.20.1730.10    

ProteinModelPortal

H9JBG5   A0A3S2LFK1   A0A2A4JVV6   A0A212F6Y7   A0A194RC90   A0A1B6DS39   + More
A0A2J7QJS2   A0A1Y1MH80   A0A2J7QJT7   A0A139WI19   A0A1Y1MCD1   A0A2P8Y102   A0A139WI01   A0A0A9ZFM9   A0A0K8V6R8   A0A182NJJ9   A0A0K8VCB8   A0A182WL57   A0A034WNE1   A0A0L0C6R5   B4GS39   Q2M053   A0A1A9ZMT8   A0A1W4VVB7   A0A1A9UXU1   B4KWX0   A0A1B0G5R2   B3NEY0   A0A1A9W4N0  

PDB

5NVA     E-value=4.2346e-13,     Score=178

KEGG

101740048    K14388 solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12 | (RefSeq)

GO

GO:0022857   GO:0016021   GO:0005215   GO:0006810   GO:0016020   GO:0006388   GO:0009881   GO:0019226   GO:0042065   GO:0042066   GO:0003707   GO:0043565   GO:0055085  

Length:

219

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

102.60626

Exp number, first 60 AAs:

14.56042

Total prob of N-in:

0.71544

POSSIBLE N-term signal

sequence

outside

1  -  71

TMhelix

72  -  91

inside

92  -  99

TMhelix

100  -  122

outside

123  -  136

TMhelix

137  -  159

inside

160  -  186

TMhelix

187  -  209

outside

210  -  219

 

 

Pi

196.560235

Theta

194.35457

Tajima's D

-0.129218

CLR

0.244487

CSRT

0.334333283335833

Interpretation

Uncertain