SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05693  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006830
Annotation
PREDICTED:_nipped-B-like_protein_A_[Bombyx_mori]
Full name
Nipped-B protein      
Location in the cell
Nuclear   Reliability : 3.871
 

Sequence

CDS
ATGAATGAGAGGGATATTCCCAGTGTCCCCATTACAACACTAGCAGGAGTAGCTAGTCTGACAGATTTATTACCAGTGTTACCACTTCCAACACCTTTACCGTCAACATTAAATAACAAGTCGCAACTTTTCCACCCACTGGTGGCTGAAGAGGCAGCAAAATTATTGGCAACACGAGATAAAGATTTAGTTTCGCAGCTTCTTGAGTCACTAATGCAAACGTCTGTACGGAATATAGATTTAAAGGATGAAAGCATTCCAAATGCAGTTAGTCCTGCACCTCAACAACAATCTACACCTGAATTGTTGAAGGCAATTTTAAGCATAAATCCCAATGTATTTGATCAACAGCAACAAAATCATTGGAGTAACAATAGTATACACACATCAAAATTTAATGGGATATCTCCATCTCCATCATATAGTTATACACAACATAATGCAGTTCCCTCAAGCCCTTCGACATTAGGGACAGCAATTCACTCTGGGACCATTCCCAGTCAACAGTTGTTGGCTCCACCATGTCAGTCATCACCTCACGTAAACATGGGTTCCCCTCCATCCCAGGCCAGACCAGGTTCCCAACTTAATATCACTGGACAAAATAGTATATCCCCGATTTGGAGTAATGCAAATTCATCCAGTACATATCCGAGTCCGCAGTCCACAACTTGTTCGAATCCTCAAAATGGTGGATTCTACAATAGTATAGTTTCAGACAATAGAAATTTTGATACTAATATTAGTGATGAAAAAGATCCATTATCTATGTCACCAACAAATCAACCTGAACAACAAAGGTTACACATGCAAATGCAAGACAAAACTTTTGAACAAGCTGATGGTAACGTTATGACTGGCCAATCTCCAGCCCAAGCTAGTGTAGCGCCATCACCCTTACGACAAGAACCTCATGTGCCTCAGCCGTCAATGGGTGCACCTTATGCTCCCATACAACAAACACAAAACACTGCTACTGATAAGCAAGACAACAAAAACGCCAATGCAAACAACAGATATCCTGTAGTAAAACTTGGCCGTCTATCTGATGGAATTCTGAAAAAACACGACTTTTCTAATGATTCTCGATCCAGAAAAAATAGTGTTCTTGAATCGGATTCAGATGAAAACGCGCCGCTTAAACCAAAATCTAGTAATTGCACTCCCACTGTAGACAAGGAAAGGGAAGCCATAGATATTGCTAGAGAAAAAAATTGGGAAGCTGTTAAAAGGAAACATGAAGAAGCTAGTAAAAAAGAAGAAGCTGAGGCAGCTATAGTGCGACCCAAACTAAGAAAAGTCGAAAGACGATTAGTACCTGTTTTAGAAATGTTGTCAGTAGATGAATTAATGGAAACAAACACGTATCAACGATTCAATAAATTAATTGAATCGGTATTTGAAACCATTGATGATGATGTAATTATAACAGAAGAAATGGAGGGTACTGATATCCCAGAAGAATTACTGCTGCCACGGTATCAACTTCAGGAACTGTGTTCGGAGGCAGCAAAATTGAAAAACCTTGGTGCTATGGAAGCAATACCTTCAGACAGATTAGTTCGCCTATTGAATATATTAGAAAAAAATATAAGAGCGTCAGAGAAAATGTCATTGTTGGGCGATCCTGAAGACAGTGAAGAAATGCGGCAGATATGGATAGAATCAGCTTTAGAAAGAGTGATGTGTGCGTCAGATGCATGTCTCACGTCTTTGTACATAATGACATCCCCGAGCATGCCGAAACGAATATTTTTAGAAGACGTTATAGATAGAATTATTATGTTCATTAAATTCCAATTAAACAATACCATTTACTGTGTATATGATCCTGTATATAGTATTCAGACGACATCTAAAAGGAAAGTGGACGGCCGCAAGCGTCGCGGCGGCGGGGCGGGGCTCGCGACGCGTCGCTGCGGCGGCTCCACGCGCGCCGTCAAGGAGCTGTACACGCACGCGCACGAGAGCGTCACGCTGCTCGCGGAACTGTTCGCGGCGCACCACCTCACCGACACCACGGTGCTGCACGCCTCCACTGTTGGCGTCTCGCCCTTCTTCGTAGAGAACGTCAGCGAGCTGCAGCTGTCGGCGTTGAAACTCGTCACGACGATATTTACAAAATATGAACAACATCGACGTCTCTTACTGGAAGATATATTGGCATCGATAGCCCGTATACCCAGTTCAAAACACAATTTGCGTTCCTTTCAACTAAATGCTGATCAACATATTCAAATGCTCACGGCGCTTGTCTTACAACTTGTACAATGTGTCGTCACTCTGCCAGAGACGCTTTGTAAATCTAATGAGAAAGACAAGGAACATTCAGAGTCTTCTGATAGTAAAAAACCTGTAGATAAAGACCTGCTCATCATCTCAAAGTACGAAGCGGCAATAAGCGTAGGTGGCACATTCCTAACGTCATTCCTAAACAAATGTCGGAGTCGTTCCGAAGAGGTGGACTTCAGGCCGCTGTTTGAAAATTTCGTACACGACCTCTTGACGACTGTTAACAAACCCGAGTGGCCCGCGACGGAACTACTGCTCAGCTTACTCGGAACCATGTTGGTGAAGTACATGTCGGACAAATCTATGGAGATGTCCGTTCGCGTGGCGTCGCTGGAGTACCTCGGGCTGGTAGCGGCGCGTCTGCGCAGGGACAGCGTGCACTCGCGCGGCAAGCTCGCCGCCATGGACGCTGTCGTGAGGGACATCCGCGCCGAGGAAGAGAAGGACGGCACCCACGGACAGAACGTGACGTCCGGCCTCGACGAGGACGAAGAGAGAACGGAATTCCTGCAGCGGGTCCTGCTGGATTATCTCGCGATAAACGGGCAGAAGGATCAAGCTTGGAATTGCGCTCGACATTTTTATATCACGCAGTGGTACAGGGATATGGTGGTTCAGCCGAAGAATACATCGCCGACAAAAAAGCCTAAAAATAAATCTAAGAAGCGTCATAGAGAACTTTCTAGCGAGGAGGAATCCGACGCTGACGAAGACAGTGATGGAGGCCTGAAGGACTCTAAATCGGATCGAAAGCATATCGCGAGTGCTATCGATTCGGCAGAAAAATTCAAAACAATAGAACGAAGAAAGAATTTCTTTATAGAAAAAATTAGGCCATTCCGGTACCAGGGTGGCACCCAAGTGCAGGTGATGCAATCGTACATAGATTATAGTGGAGCTGAACTTATTTCGCAATATCTAGCTTCAAAAAGGTCTTTCTCGCAAAGTTTTGATCGGTATTTGCGAAAAATTCTTGTTATACTGTGCGAAAATACGATCGCCATACGAACGAAGGCGATGAAATGCTTGGCGATGATAGTCGAAGCAGATCCGTCCGTATTGGCGAGGCCCGATATGCAGATCGGAGTGAACCGATCGTTCCTCGACCAATCCACGGCAGTGCGGGAAGCTGCCGTCGATCTCGTTGGAAAATTCGTCTTGAGCAGACACGATCTTATCGACAAGTATTACTCTATGCTCTCAAACAGAATATTGGATACTGGCGTATCAGTAAGGAAACGTGTAATTAAAATTTTAAAAGACATCTGTATAGAATGCCCCGAGTTTCCTAAAATACCCGAGATATGTGTAAAAATGATCAGACGAGTAAATGACGAGGAAGGTATCAGGAAACTGGTTATGGAAGTATTTCAGAACATGTGGTTCAGTCCATGCCTAAACACCAGCCGGCCGGGAGCCCTCGACATGACGGCGGCGGCCGCCGACCCTCTCACCAGGAAAGTACTGAACATCACGGACGTTGTTATTTCGTCCAGAGACATCGGTCTCGAATGGTTTCAGCAATTACTTATGAGCTTATTCAAACCTAAAGAAGATAAAGATGATTCCACTAAAATAATTTATCAACCGCCTAAATCGCTGCTAGTAGCTTGTCAACAAATAGTCGACTGTCTTGTAGAGAGCTTACTACAGTTGGAAGAGACTAGTTCAGAAGGTTCCAGTTCACCACAAAGAATTTTAGCGTGTCTCTCAACTTTGCATTTATTTGCAAAAATCAGACCGCAGCTGCTTGTTAACCATGCCTTAACTTTGCAACCGTATCTCAGTTTGAAATGTCAGAATCAACACGAGCAGCAAATAATGTCGACAGTGGCGTCCACTCTTGAACTAGTCGTACCGCTAATGGAACACCCGAGTGAAGTATTCCTGGCTCAGTTGGAAGAAGATGCCGTTAAACTTATTCTGCAGCGTGGTCAACACGTCATCGCTTCGTGCATAGCCTGCTTAGCAGCTATAGTCAACAATCTCACGCATAATTATAAACTAATTAGGGATGTATTTAATAAATATCACGGGGTCCTACTCCAATGGAAAAGCAGCTGGCAGCGAAATCCCGAAATGACACGTTCATCACATTCGAGACCTCATTTTCGTCGTGCACTTTTCATCGTGGGCTTATTACTCAGATACTTTGACTTTACGGACGTCAAAGTCATTGATGGTCTTCCAAACGACATAAAAGAACAGGTTTATTCAACGCTGATGTTTTTTGTGGGTTTGGAAGATGAGGACTTCGTCTCACATACTCTTAAAGCCCTGGGTTCAGTGTGCGTACGGCATTACGAATTCATGTTACGCCCTGAACTCAAAGAATTCTACCATCAACTACTGACCTCAGATTTAGCTCCGATAGAAATGAAAGTGGACGTATTGAGGAACATTGAAATGTACTTACAAGAGGAAGAGCAAAGAATGATAAGGCAAGATAAAGAGTGGTCAACAAGATCAAAACATGAGAATCTCAAAGAGATGGGTGACGTATCATCGGGCATGGCGTCGACGGTGATCCAGTTGTACCTAAAAGAAATCCTCGGCTCGTCCATACATCACAGTACGGTCGTGCGGTCCGCCGCCATGAAGGTTGTACAGCTCGTCTTGGCGCAGGGGCTCGTGCATCCTGTACAGATTGTACCATACTTAATAAGCATGAGCACGGACTTAGAGGTAACAGTGTCACACACAGCGGACAAAAATCTTCAGGAAATAGATAAAAAATATCCCGGTTTCATCCACATGAAAGCGCAACTAGGAATCAAACTATCATACCAGTTACAAAAAACTTTGCAGTCGAACAGCAGAGAAAAAAACGTCATAAGGGGATTTAGGAAAAAAGAACTAGATGATCTACCCACTGCCCTTAACGGGTTTTTATATTCACTATTGAGGAACACAAGGCCGCAGAGACGAGCTTTAATTTTGTCATTACTAAAACAGTTTGACGATGTGTCGACTGCTCCATTAGATCAGATGCTGTACCTGGCCGATAATTTAAGTTACTTTCCATATCAAGTACAAGATGAACCATTGTTCATAATACATCATATAGATATCATAATTTCAACGTCAGGGTCAAATTTATTACAGCTTTTTCGTGAGGGCTTAATAAAATCCAATGCAGGAGAGAAAGGTACCGCGGAGGAAGAGGAGGAGGAGGAAGAAGAAGACGCAGAGGCGTTGGAGGCGCGGGTACCGGACAACACGCGCGCGCTGCGGGACGCCATGCGCCAGGCGCGCGGCTGTCTCCTGCTGCTCGTACTCAAACAGCACCTCAAGCAACTCTATGGATTCACAGATGCTAAAATCAATCAATATTCTCCATCGGAGAGTGTGAAAGTATACGAGAAGGCGGTGTCTCGACGGCACGCGCCAATATTCGAGCCCAAGGCCACGATCTTGCAGCTGCAGGAAGACGAGTGTGAAGACGAACTCGACAGACGCGGCCGCCGTAGACTCATCAACGATTACCTCGAATTGAAGCAGCTAATGCTGAAGTTCGACCCAGAAGAGGAGGACGAAGAAGAGAGTGCGGCGGGCGGCGGTGCCCCTCCCCCTCCCCCTACCTAG
Protein
MNERDIPSVPITTLAGVASLTDLLPVLPLPTPLPSTLNNKSQLFHPLVAEEAAKLLATRDKDLVSQLLESLMQTSVRNIDLKDESIPNAVSPAPQQQSTPELLKAILSINPNVFDQQQQNHWSNNSIHTSKFNGISPSPSYSYTQHNAVPSSPSTLGTAIHSGTIPSQQLLAPPCQSSPHVNMGSPPSQARPGSQLNITGQNSISPIWSNANSSSTYPSPQSTTCSNPQNGGFYNSIVSDNRNFDTNISDEKDPLSMSPTNQPEQQRLHMQMQDKTFEQADGNVMTGQSPAQASVAPSPLRQEPHVPQPSMGAPYAPIQQTQNTATDKQDNKNANANNRYPVVKLGRLSDGILKKHDFSNDSRSRKNSVLESDSDENAPLKPKSSNCTPTVDKEREAIDIAREKNWEAVKRKHEEASKKEEAEAAIVRPKLRKVERRLVPVLEMLSVDELMETNTYQRFNKLIESVFETIDDDVIITEEMEGTDIPEELLLPRYQLQELCSEAAKLKNLGAMEAIPSDRLVRLLNILEKNIRASEKMSLLGDPEDSEEMRQIWIESALERVMCASDACLTSLYIMTSPSMPKRIFLEDVIDRIIMFIKFQLNNTIYCVYDPVYSIQTTSKRKVDGRKRRGGGAGLATRRCGGSTRAVKELYTHAHESVTLLAELFAAHHLTDTTVLHASTVGVSPFFVENVSELQLSALKLVTTIFTKYEQHRRLLLEDILASIARIPSSKHNLRSFQLNADQHIQMLTALVLQLVQCVVTLPETLCKSNEKDKEHSESSDSKKPVDKDLLIISKYEAAISVGGTFLTSFLNKCRSRSEEVDFRPLFENFVHDLLTTVNKPEWPATELLLSLLGTMLVKYMSDKSMEMSVRVASLEYLGLVAARLRRDSVHSRGKLAAMDAVVRDIRAEEEKDGTHGQNVTSGLDEDEERTEFLQRVLLDYLAINGQKDQAWNCARHFYITQWYRDMVVQPKNTSPTKKPKNKSKKRHRELSSEEESDADEDSDGGLKDSKSDRKHIASAIDSAEKFKTIERRKNFFIEKIRPFRYQGGTQVQVMQSYIDYSGAELISQYLASKRSFSQSFDRYLRKILVILCENTIAIRTKAMKCLAMIVEADPSVLARPDMQIGVNRSFLDQSTAVREAAVDLVGKFVLSRHDLIDKYYSMLSNRILDTGVSVRKRVIKILKDICIECPEFPKIPEICVKMIRRVNDEEGIRKLVMEVFQNMWFSPCLNTSRPGALDMTAAAADPLTRKVLNITDVVISSRDIGLEWFQQLLMSLFKPKEDKDDSTKIIYQPPKSLLVACQQIVDCLVESLLQLEETSSEGSSSPQRILACLSTLHLFAKIRPQLLVNHALTLQPYLSLKCQNQHEQQIMSTVASTLELVVPLMEHPSEVFLAQLEEDAVKLILQRGQHVIASCIACLAAIVNNLTHNYKLIRDVFNKYHGVLLQWKSSWQRNPEMTRSSHSRPHFRRALFIVGLLLRYFDFTDVKVIDGLPNDIKEQVYSTLMFFVGLEDEDFVSHTLKALGSVCVRHYEFMLRPELKEFYHQLLTSDLAPIEMKVDVLRNIEMYLQEEEQRMIRQDKEWSTRSKHENLKEMGDVSSGMASTVIQLYLKEILGSSIHHSTVVRSAAMKVVQLVLAQGLVHPVQIVPYLISMSTDLEVTVSHTADKNLQEIDKKYPGFIHMKAQLGIKLSYQLQKTLQSNSREKNVIRGFRKKELDDLPTALNGFLYSLLRNTRPQRRALILSLLKQFDDVSTAPLDQMLYLADNLSYFPYQVQDEPLFIIHHIDIIISTSGSNLLQLFREGLIKSNAGEKGTAEEEEEEEEEDAEALEARVPDNTRALRDAMRQARGCLLLLVLKQHLKQLYGFTDAKINQYSPSESVKVYEKAVSRRHAPIFEPKATILQLQEDECEDELDRRGRRRLINDYLELKQLMLKFDPEEEDEEESAAGGGAPPPPPT

Summary

Similarity
Belongs to the SCC2/Nipped-B family.
Feature
chain  Nipped-B protein
EMBL
AGBW02012455    OWR45028.1    NWSH01000646    PCG75053.1    KQ459606    KPI91481.1    + More
ODYU01012985    SOQ59566.1    GDQN01010907    GDQN01001019    JAT80147.1    JAT90035.1    GDQN01008227    GDQN01001157    JAT82827.1    JAT89897.1    JTDY01000870    KOB75611.1    KQ460207    KPJ16628.1    GDQN01011548    GDQN01000817    JAT79506.1    JAT90237.1    KK107139    EZA57826.1    KQ971307    KYB29713.1    EFA11119.1    GL452834    EFN76684.1    KQ435885    KOX69625.1    QOIP01000003    RLU24816.1    KQ768090    OAD53238.1    DS235005    EEB10352.1    LJIG01002449    KRT84491.1    KQ434839    KZC07974.1    GBYB01011065    JAG80832.1    KQ979955    KYN18501.1    GEZM01043016    GEZM01043015    JAV79384.1    GL443910    EFN61527.1    LBMM01000395    KMQ98477.1    KZ288295    PBC28982.1    GL765434    EFZ16343.1    KQ982074    KYQ60470.1    GBBI01002726    JAC15986.1    GECU01006041    JAT01666.1    GFTR01008852    JAW07574.1    GDHC01018064    JAQ00565.1    APGK01047135    KB741077    ENN74150.1    KB632384    ERL94283.1    ACPB03011711    ACPB03011712    ACPB03011713    NNAY01005340    OXU16740.1    GGMS01015216    MBY84419.1    LJIJ01000074    ODN03427.1    GGFJ01000175    MBW49316.1    GFDL01003291    JAV31754.1    GGFJ01000102    MBW49243.1    GFDL01003303    JAV31742.1    GFDL01003313    JAV31732.1    GGFK01002863    MBW36184.1    JXUM01057096    JXUM01057097    KQ561939    KXJ77108.1    GFDL01003311    JAV31734.1    ADMH02000176    ETN67503.1    CH477429    EAT41087.1    GGFL01002800    MBW66978.1    GGFL01002659    MBW66837.1    NEDP02005318    OWF42149.1    UFQT01000114    SSX20244.1    KB201611    ESO95734.1    GFPF01006835    MAA17981.1    GEDV01003479    JAP85078.1    GACK01009906    JAA55128.1    GACK01009986    JAA55048.1    GACK01010053    JAA54981.1    KQ422187    KOF75388.1    AJVK01001888    AJVK01001889    AJVK01001890    AJVK01001891    AJVK01001892    AJVK01001893    AJVK01001894    KOF75387.1    PZQS01000002    PVD35773.1    GACK01002067    JAA62967.1    JH816622    EKC22078.1    AMQN01005336    KB295744    ELU12686.1    KQ419605    KOF82943.1    GFAC01002496    JAT96692.1    CH940649    KRF81724.1    CH902628    KPU75362.1    KRF81725.1    CH933807    KRG03874.1    KRG03872.1    EDW13566.2    KRG03873.1    OUUW01000006    SPP81592.1    CH479180    EDW28358.1    CH891640    KRK05081.1    KRK05083.1    EDW99449.2    KRK05085.1    SPP81599.1    SPP81593.1    SPP81597.1   
Pfam
PF12765   Cohesin_HEAT        + More
PF12830   Nipped-B_C
Interpro
IPR016024   ARM-type_fold        + More
IPR024986   Nipped-B_C       
IPR026003   Cohesin_HEAT       
IPR033031   SCC2/Nipped-B       
IPR011989   ARM-like       
SUPFAM
SSF48371   SSF48371       
Gene 3D
PDB
5T8V     E-value=6.54575e-19,     Score=238

Ontologies

Topology

Subcellular location
Nucleus  
Length:
1958
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.0129
Exp number, first 60 AAs:
0.9627
Total prob of N-in:
0.04388
outside
1  -  1958
 
 

Population Genetic Test Statistics

Pi
241.464837
Theta
179.082273
Tajima's D
0.746172
CLR
0.182639
CSRT
0.589420528973551
Interpretation
Uncertain
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