Gene

KWMTBOMO05688  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006851

Annotation

PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]

Location

Bomo_Chr10(+):8219772-8233639      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.14 Mitochondrial   Reliability : 1.314 Nuclear   Reliability : 1.356

CDS

ATGGATAAAATACCAAGAACTCATGAAGCCATTGAAGCACAAATAAAAGAAATACAATCAAAAAAAACTGAAGCACCAGAAAATGGTTCCAACAAAGGCGTGTCTCTCGGCGAGACTTACTATGACAGCGATATATATGATAGCACAGGCCAAGGAGGCAAGTCCAGATATGACGGATATGTGACATCAATTGCTGCTAATGACGAAGTAGAAGATGATGACCTCGAAAATGTTCCTATAACTCAGAAAAGGCCAGGATATACAGCACCTGCTTCACTGTTGAATGACATTGCACAAAGTGATAAAGAATTCGATCCTTTTGCTGACAAACGAAGACCAACTATCGCTGATAGAGAGGATGAATATCGACAAAAGAGGCGCAGGATGATTATATCACCTGAAAGAAATGATCCTTTTGCAGAAGGTGGGAAAACTCCTGATGTCGGATCGAGGACATACACTGATATAATGAAAGAGCAGTATCTTCTTGCTGAAGAAACAGAACTCAGAAAGAAACTGTTAGAGAAAGCTAGGGAAGGAACTCTCAAACCAGTACCACAATCTAATGGAGAATCCATAAAACCAGCAGCAAAACGCAAAGGTAGATGGGATCAAAGTTCTGAAGAAACACCAGTTGTTAAGAAAACAGTATCAACTACACCAAGCTCACAGACAACTCCGTCTTGGGATGCTGAGAGAGGCACATGGGAAGAAACTCCGGGAGCAGGTCGGGGCGGCGAGACGCCCGGTGCCACGCCATCGGCACGTGTTTGGGATGCCACACCAGGACATATCACTCCTGGACACGCCACTCCGGGGCGCGAAACTCCGGCTCATCACGCTTCTCGCAGAAATCGCTGGGATGAAACACCAAAAACAGATAGAGAAACACCAGGACACAACAGCGGTTGGGCTGAGACACCACGAACAGATCGCGGGTCAGGCGTGGATACAATACAGGAGACCCCCACCCCTGGCACAAAGCGGCGCTCGCGTTGGGACGAAACCCCCGGTGCCACGCCCGCACCCGCCACCCCCACGCCTTCTCACGCCACGCCTTCCCATGCCACACCCTCGCACGCCACGCCATCGCTCTCTACACCGACGCCGCACACGCCTGTCTTCACGCCAGGAGGGTCTACACCTGTGGGAGTGAAAGCCATGGCACTGGCTACACCAACACCTGGTCATGTTGCAGCCATGACTCCAGAACAGTTACAAGCTTATCGTTGGGAGAAAGAAATAGACGAGCGTAATAGACCTTACACTGATGAAGAACTGGATGCCATGTTCCCTCCTGGGTACAAGGTTTTACCACCGCCTGCCGGGTACGTCCCGATTCGGACGCCGGCCCGCAAGCTGACGGCGACGCCCACGCCGTTGGGTGGTACTCCAATCGGGTTTTTCATGCAGACGGAGGAGCCGGGCGGCTCGGCCGCGGCGGCCGCGCGTCTTCTCGACCCTCAGCCCAAGGGTAACCAGCAGCTGCCCTTTATGAAGCCCGAGGACGCCCAGTACTTCGACAAACTTCTCATCGACGTCGACGAGGATACACTCTCTCCCGACGAACTTAAGGAACGGAAAATAATGAAGCTTCTTTTGAAAATAAAGAACGGTACGCCACCCATGTGCAAAGCTGCCTTACGACAAATAACAGATAAAGCTCGCGAATTCGGTGCTGGACCACTTTTCAATCAAATTCTGCCATTACTGATGAGTCCTACGCTGGAAGATCAAGAGAGACATCTACTGGTCAAAGTCATAGACAGGATTTTGTATAAATTAGACGACTTGGTTCGACCCTACGTACATAAGATTCTTGTCGTCATTGAACCTCTGCTTATTGATGAAGATTATTATGCGCGTGTCGAAGGTCGCGAGATCATTTCAAATTTAGCTAAAGCAGCCGGCTTGGCTACTATGATTTCTACAATGAGGCCTGATATAGACAACATAGATGAGTATGTACGAAACACAACCGCTCGAGCGTTTGCGGTAGTGGCATCGGCCTTGGGTATTCCATCTTTATTGCCATTTTTAAAAGCTGTGTGCAGATCTAAGAAATCCTGGCAAGCACGTCACACAGGAATAAAGATTGTGCAACAAATTGCTATTCTGATGGGCTGTGCTATTCTGCCACATTTGAAATCTCTTGTTGAAATTATTGAACATGGTCTGGTGGACGAACAACAGAAGGTCCGAACGATCACGGCGCTGGCGAGCGCGGCTCTGGCCGAGGCCGCCACGCCCTACGGTATCGAGTCCTTCGATTCCGTGCTCAAACCTCTGTGGAAAGGTATTCGTACGCATCGTGGTAAAGGTCTGGCTGCATTCCTGAAAGCCATCGGATACCTCATCCCTCTCATGGATGCAGAATACGCGAATTACTACACACGAGAAGTGATGCTAATTCTTATTCGTGAGTTCCAGTCGCCCGATGAAGAAATGAAAAAAATCGTCTTAAAAGTAGTAAAACAATGTTGCGGTACCGACGGTGTTGAGCCTCAATACATAATGGATGAAATATTGCCTCATTTCTTTAAACACTTCTGGAACCATCGTATGGCCCTCGACAGACGAAACTATCGCCAGCTTGTCGACACCACAGTGGAAATTGCAAACAAGGTCGGTGCATCAGAAATTATCAACAGAATTGTTGATGATCTAAAAGACGACAATGAGCAGTATAGAAAAATGGTGATGGAGTCCATTGAAAAGATTCTCGCTAATTTAGGAGCAGCAGACATTGATTCTAAGCTCGAAGAAGCTCTTATCGATGGAATATTGTATGCATTCCAAGAACAGACAACTGAGGATGTTGTGATGCTGAACGGTTTTGGAACAATCGTGAATCAATTGGGAAAACGCGTAAAGCCCTATTTACCACAGATATGTGGTATTATTCTTTGGCGTATGAACAACAAGTCTGCTAAAGTTCGGCAACAAGCTGCCGATCTCATTTCTCGGATCGCTGTCGTGATGAAAACTTGTCAGGAGGAAAAGTTAATGGGGCATCTTGGTGTTGTACTGTATGAGTACTTGGGAGAGGAATATCCTGAAGTGCTAGGCTCTATACTTGGTGCATTAAAAGCAATTGTCAATGTTATTGGAATGACAAAGATGACCCCACCAATAAAGGATCTCCTGCCTAGGCTTACACCCATTTTGAAAAACAGGCATGAAAAAGTACAAGAGAATTGTATTGATTTAGTGGGTCGTATTGCAGACAGAGGACCGGAATTTGTGTCGGCCAGAGAATGGATGAGAATATGTTTTGAATTGCTTGAACTATTAAAGGCTCATAAGAAGGCAATTAGACGAGCGACTGTAAATACCTTTGGTTATATTGCTAAAGCCATCGGTCCTCATGACGTACTCGCAACCTTACTTAACAATCTGAAAGTGCAAGAGAGACAGAACAGAGTGTGCACAACGGTCGCTATTGCTATAGTTGCAGAGACCTGTTCACCTTTCACAGTGCTACCTGCTTTAATGAATGAATACAGAGTACCGGAATTAAATGTTCAAAACGGTGTGCTCAAATCACTATCTTTCCTTTTCGAGTACATTGGAGAAATGGGCAAGGATTACATTTATGCAGTTTGCCCATTATTGGAAGACGCGCTTATGGATCGAGATTTAGTACACAGACAAACGGCTTGCGCTGCCATAAAACATATGTCGCTCGGCGTGTATGGTTTCGGCTGTGAAGATGCCTTAGTACATCTATTAAATCATGTTTGGCCAAATATTTTTGAGACATCACCGCATCTGGTGCAAGCCTTCATGGACGCTGTTGAGGGCATGCGAGTTGCCCTAGGTCCCATTAAAATACTTCAATATGCATTACAGGGCCTGTTCCATCCAGCGAGGAAAGTACGCGACGTTTATTGGAAAATTTACAATACGCTTTACATCGGAGGACAGGACGCACTTGTTGCAGGATATCCCAGAATACAAAATGACCCAAATAATCACTTCATTAGATACGAATTAGATTATCTGCTTTAA

Protein

MDKIPRTHEAIEAQIKEIQSKKTEAPENGSNKGVSLGETYYDSDIYDSTGQGGKSRYDGYVTSIAANDEVEDDDLENVPITQKRPGYTAPASLLNDIAQSDKEFDPFADKRRPTIADREDEYRQKRRRMIISPERNDPFAEGGKTPDVGSRTYTDIMKEQYLLAEETELRKKLLEKAREGTLKPVPQSNGESIKPAAKRKGRWDQSSEETPVVKKTVSTTPSSQTTPSWDAERGTWEETPGAGRGGETPGATPSARVWDATPGHITPGHATPGRETPAHHASRRNRWDETPKTDRETPGHNSGWAETPRTDRGSGVDTIQETPTPGTKRRSRWDETPGATPAPATPTPSHATPSHATPSHATPSLSTPTPHTPVFTPGGSTPVGVKAMALATPTPGHVAAMTPEQLQAYRWEKEIDERNRPYTDEELDAMFPPGYKVLPPPAGYVPIRTPARKLTATPTPLGGTPIGFFMQTEEPGGSAAAAARLLDPQPKGNQQLPFMKPEDAQYFDKLLIDVDEDTLSPDELKERKIMKLLLKIKNGTPPMCKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKIVQQIAILMGCAILPHLKSLVEIIEHGLVDEQQKVRTITALASAALAEAATPYGIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEPQYIMDEILPHFFKHFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRIVDDLKDDNEQYRKMVMESIEKILANLGAADIDSKLEEALIDGILYAFQEQTTEDVVMLNGFGTIVNQLGKRVKPYLPQICGIILWRMNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEFVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVCPLLEDALMDRDLVHRQTACAAIKHMSLGVYGFGCEDALVHLLNHVWPNIFETSPHLVQAFMDAVEGMRVALGPIKILQYALQGLFHPARKVRDVYWKIYNTLYIGGQDALVAGYPRIQNDPNNHFIRYELDYLL

Similarity

Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.

Uniprot

H9JBF6   A0A2A4JSP1   A0A194RFM2   A0A194PK67   A0A212EU62   A0A2H1VIF9   + More
A0A1W4WWG8   A0A2J7R723   A0A154PJ75   A0A088AQ11   A0A146MA30   A0A0C9QR45   A0A2A3EIG8   A0A224X5B3   E0VK59   A0A1B6FM84   A0A232FLA7   K7IPV2   A0A0P4VU57   A0A139WC93   A0A0M8ZPW6   K7J1Y1   K7PQ80   A0A1Y1MRT7   B0WPC8   A0A1S4JNZ4   A0A2M4B9T2   W5JDY8   A0A182F0X8   A0A0L7QLT2   A0A2M4A9K8   T1I2N4   A0A182GWZ2   Q17F20   N6U455   E9IZA5   A0A1Q3FD79   A0A158P0S8   Q7QEW2   A0A195CXI4   A0A182P298   A0A3L8E186   U4UGU2   W4VRR9   A0A182YH49   A0A182MDD8   E2C8W2   A0A182N0F3   A0A182HIC7   F4WUU2   A0A151WWM8   A0A151JD02   A0A195FX49   U4U9S9   T1PIZ0   A0A182QVD5   A0A0K8VYL4   A0A1I8MGN7   A0A1B0GK95   A0A0L0BLC2   W8CEF0   A0A182Y565   A0A0A1X911   B4LTN6   B3MLP9   B4KFG6   B4JDR6   B4G880   B4P2G3   A0A0M5J8I6   A0A1L8DH50   B5DI06   A0A1J1HTB9   A0A1I8Q2K3   A0A195AUH1   B3N7S3   A0A3B0JBK8   Q9VPR5   B4N0T4   A0A1W4V410   A0A1B0DP60   A0A310SRE1   A0A0J9QTG0   B4ICZ1   E2AAN4   A0A1A9W934   A0A0J7KYV2   A0A1A9UHY6   A0A1A9Y8M1   A0A1B0C3V7   A0A1B0G5M0   A0A1A9ZBC0   A0A084WPU1   A0A182PUY4   A0A182IUQ0   T1IVP7   E9HF38   A0A182MHA2   L7M6K9   A0A224Z8I6  

Pubmed

19121390    26354079    22118469    26823975    20566863    28648823    + More
20075255    27129103    18362917    19820115    23139334    28004739    20920257    23761445    26483478    17510324    23537049    21282665    21347285    12364791    14747013    17210077    30249741    25244985    20798317    21719571    25315136    26108605    24495485    25830018    17994087    17550304    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    24438588    21292972    25576852    28797301   

EMBL

BABH01030852    BABH01030853    BABH01030854    NWSH01000646    PCG75057.1    KQ460207    + More
KPJ16623.1    KQ459606    KPI91490.1    AGBW02012455    OWR45033.1    ODYU01002544    SOQ40182.1    NEVH01006738    PNF36634.1    KQ434936    KZC11895.1    GDHC01003219    JAQ15410.1    GBYB01006194    JAG75961.1    KZ288232    PBC31498.1    GFTR01008741    JAW07685.1    DS235239    EEB13765.1    GECZ01018472    JAS51297.1    NNAY01000087    OXU31127.1    GDKW01001031    JAI55564.1    KQ971371    KYB25540.1    KQ435922    KOX68675.1    JX434608    AFP20535.1    GEZM01023516    JAV88341.1    DS232022    EDS32303.1    GGFJ01000652    MBW49793.1    ADMH02001427    ETN62577.1    KQ414905    KOC59608.1    GGFK01004162    MBW37483.1    ACPB03021045    JXUM01094257    JXUM01094258    KQ564116    KXJ72753.1    CH477277    EAT45112.1    APGK01050185    KB741167    ENN73372.1    GL767121    EFZ14106.1    GFDL01009576    JAV25469.1    ADTU01005778    AAAB01008846    EAA06480.5    KQ977141    KYN05373.1    QOIP01000001    RLU26386.1    KB632191    ERL89816.1    GANO01000389    JAB59482.1    AXCM01001335    GL453722    EFN75618.1    APCN01003927    GL888378    EGI62006.1    KQ982691    KYQ52065.1    KQ979038    KYN23473.1    KQ981200    KYN45001.1    ERL89817.1    KA648731    AFP63360.1    AXCN02001415    GDHF01008380    JAI43934.1    AJWK01028576    JRES01001701    KNC20842.1    GAMC01000311    JAC06245.1    GBXI01006675    GBXI01004113    JAD07617.1    JAD10179.1    CH940649    EDW65009.1    CH902620    EDV30770.1    CH933807    EDW13081.1    CH916368    EDW03436.1    CH479180    EDW28560.1    CM000157    EDW87159.1    CP012523    ALC37918.1    GFDF01008305    JAV05779.1    CH379060    EDY69943.1    CVRI01000020    CRK91312.1    KQ976738    KYM75670.1    CH954177    EDV57249.1    OUUW01000004    SPP79734.1    AE014134    AAF51478.2    AGB92374.1    CH963920    EDW77697.1    AJVK01007915    AJVK01007916    AJVK01007917    AJVK01007918    KQ761346    OAD57849.1    CM002910    KMY87341.1    CH480829    EDW45417.1    GL438137    EFN69484.1    LBMM01001954    KMQ95478.1    JXJN01017889    JXJN01025121    CCAG010013941    ATLV01025131    ATLV01025132    KE525369    KFB52235.1    AXCP01007967    JH431589    GL732633    EFX69656.1    AXCM01007375    GACK01005364    JAA59670.1    GFPF01012027    MAA23173.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000192223    + More
UP000235965    UP000076502    UP000005203    UP000242457    UP000009046    UP000215335    UP000002358    UP000007266    UP000053105    UP000002320    UP000000673    UP000069272    UP000053825    UP000015103    UP000069940    UP000249989    UP000008820    UP000019118    UP000005205    UP000007062    UP000078542    UP000075885    UP000279307    UP000030742    UP000076408    UP000075883    UP000008237    UP000075884    UP000075840    UP000007755    UP000075809    UP000078492    UP000078541    UP000075886    UP000095301    UP000092461    UP000037069    UP000008792    UP000007801    UP000009192    UP000001070    UP000008744    UP000002282    UP000092553    UP000001819    UP000183832    UP000095300    UP000078540    UP000008711    UP000268350    UP000000803    UP000007798    UP000192221    UP000092462    UP000001292    UP000000311    UP000091820    UP000036403    UP000078200    UP000092443    UP000092460    UP000092444    UP000092445    UP000030765    UP000075880    UP000000305   

PRIDE

H9JBF6    Q9VPR5    L7M6K9   

Pfam

PF08920   SF3b1        + More
PF12494   DUF3695
PF02005   TRM
PF16207   RAWUL
PF00071   Ras
PF01233   NMT
PF02799   NMT_C

Interpro

IPR034085   TOG        + More
IPR016024   ARM-type_fold       
IPR011989   ARM-like       
IPR038737   SF3b_su1-like       
IPR015016   SF3b_su1       
IPR021133   HEAT_type_2       
IPR042296   tRNA_met_Trm1_C       
IPR002905   Trm1       
IPR022179   DUF3695       
IPR029063   SAM-dependent_MTases       
IPR017907   Znf_RING_CS       
IPR032443   RAWUL       
IPR005225   Small_GTP-bd_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR027417   P-loop_NTPase       
IPR001841   Znf_RING       
IPR001806   Small_GTPase       
IPR022676   MyristoylCoA_TrFase_N       
IPR016181   Acyl_CoA_acyltransferase       
IPR022677   MyristoylCoA_TrFase_C       
IPR022678   MyristoylCoA_TrFase_CS       

SUPFAM

SSF48371   SSF48371        + More
SSF53335   SSF53335       
SSF52540   SSF52540       
SSF55729   SSF55729       

Gene 3D

1.25.10.10     3.30.56.70     3.30.40.10    

ProteinModelPortal

H9JBF6   A0A2A4JSP1   A0A194RFM2   A0A194PK67   A0A212EU62   A0A2H1VIF9   + More
A0A1W4WWG8   A0A2J7R723   A0A154PJ75   A0A088AQ11   A0A146MA30   A0A0C9QR45   A0A2A3EIG8   A0A224X5B3   E0VK59   A0A1B6FM84   A0A232FLA7   K7IPV2   A0A0P4VU57   A0A139WC93   A0A0M8ZPW6   K7J1Y1   K7PQ80   A0A1Y1MRT7   B0WPC8   A0A1S4JNZ4   A0A2M4B9T2   W5JDY8   A0A182F0X8   A0A0L7QLT2   A0A2M4A9K8   T1I2N4   A0A182GWZ2   Q17F20   N6U455   E9IZA5   A0A1Q3FD79   A0A158P0S8   Q7QEW2   A0A195CXI4   A0A182P298   A0A3L8E186   U4UGU2   W4VRR9   A0A182YH49   A0A182MDD8   E2C8W2   A0A182N0F3   A0A182HIC7   F4WUU2   A0A151WWM8   A0A151JD02   A0A195FX49   U4U9S9   T1PIZ0   A0A182QVD5   A0A0K8VYL4   A0A1I8MGN7   A0A1B0GK95   A0A0L0BLC2   W8CEF0   A0A182Y565   A0A0A1X911   B4LTN6   B3MLP9   B4KFG6   B4JDR6   B4G880   B4P2G3   A0A0M5J8I6   A0A1L8DH50   B5DI06   A0A1J1HTB9   A0A1I8Q2K3   A0A195AUH1   B3N7S3   A0A3B0JBK8   Q9VPR5   B4N0T4   A0A1W4V410   A0A1B0DP60   A0A310SRE1   A0A0J9QTG0   B4ICZ1   E2AAN4   A0A1A9W934   A0A0J7KYV2   A0A1A9UHY6   A0A1A9Y8M1   A0A1B0C3V7   A0A1B0G5M0   A0A1A9ZBC0   A0A084WPU1   A0A182PUY4   A0A182IUQ0   T1IVP7   E9HF38   A0A182MHA2   L7M6K9   A0A224Z8I6  

PDB

6QX9     E-value=0,     Score=5086

KEGG

101738436    K12828 splicing factor 3B subunit 1 | (RefSeq) splicing factor 3B subunit 1

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0000245   GO:0003729   GO:0071013   GO:0005686   GO:0005689   GO:0071004   GO:0000049   GO:0004809   GO:0003924   GO:0005525   GO:0004379   GO:0071011   GO:0000398   GO:0003723   GO:0005488   GO:0003676   GO:0006470   GO:0008138   GO:0003677   GO:0004725   GO:0004887   GO:0043401   GO:0003707   GO:0043565  

PANTHER

PTHR12097  

Length:

1336

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.50674000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00030

outside

1  -  1336

 

 

Pi

280.906255

Theta

190.392468

Tajima's D

1.62928

CLR

0

CSRT

0.813209339533023

Interpretation

Uncertain