SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05679
Pre Gene Modal
BGIBMGA006844
Annotation
PREDICTED:_telomerase-binding_protein_EST1A_[Bombyx_mori]
Location
Bomo_Chr10(+):7920678-7950575      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.975
 

Sequence

CDS
ATGGATGACGAAATTAAAGAAAATAGGAGGAATAAACCACAGCAAAAGTTTTACAAACCTGGTAGTGGGCCTCTAAGACGTTCAAGATATGGTTTGGACTGTAAAATGGATCCTAGCGACGTAAATAATAGTTCCAGAAGATACAATACGCTTTATGGCTCTCACAACTCGGTCAATGATGATTTAAGTGATGCATATAGTGAAGGATCAATGACCAATGTACGCCAAAATCACAAGAAGTCTGAACAACTTTCAATAGTAGAAGATCAAGCACTACAAACAAACAAAACACAAATACAGGGTATTCTAGAGGCTCACCGAGGCAAGACAGGTCTTACAGAGATTATCAAAGCAGAAATAGTAACAATCCTAATAGTGGTAGAAGCTTTAGACAAAATTCTGAAACTAGATCTGTATCACCAAGTGTTCATGAGCACAATATTACTGGGCGCAATTATGATCGTGACAGTAGAAGTATGGAGACATCTTCTGGCCGTCACGTTCCTGCTTCTGGAGGATCTTCAAGATTATAAAAACGAAAACCATTATATGATGACCAGTAGTATCGAAAGTCAAAATGATTTCATTAGTAATGCTTCACAAAATGGTACAAGCAATGCATCAGTTGATGGTTCGAATATTCATTATGAGAAGTCAAATCATGAGGAAGATAATGATTGTAACGGTCCAACTATGTCACAAGTGACAAAGCAACTAGATTTGACGAGTTTAGATTGGACCGAGGAGGTAGAAAAGAATATAAAATTAGATGATATTTGTGACACATCAAGTAGTTTTTCTGAACAACTGAAAAAGTCAAATATTGATGAAGTTAGAACATCGGAACCAAAAGAGTCCAAAAGAAAATCGAAGCGTAAAGACAAGAGGAGTTCCAGCAGGAGCATGCGAAATTCTGATAAGAGAGAAAGGGCTAGAAAGGACAGTACTGCCAGCATACACCATGAACTAGAACATTCCAGAAAAGACAGTAATGTGAGCATTCATCATGAAGCAGTACCGGCTTGTTTGAAGCGAAGGGAAAGAGAAAGACGAGACAGCCACAGAAGTAATCGCTCATCAAATATAGGAAATAGCAGAGATGATCTGGACCGCTGGCGTTCTTTGCGTTCTTATAGCAGAGAACAAAGTACTGAAGGGAGAATAGTTTCTCAATGTAACAGCCGAGATACATCAACAAACCGCGCTACGAGTCCTAGAGATGGTGATGGATTCCGCGTACCATGTGCTGTCAGCAAGTCGGCCGCCTGGTTATCCTCTCAACGGAAGAATAGCGTCCCCTGTAACACGCGTACAGGCAGCAGTGAGCGCGGCCGCCGGTCTCCGGGCGGCGGGGAGGGAGGGGCCGGGGAGGCGGGGGGCTCGCGACGTTCGCGCCGCCGTCTACAAAAACGTCACGCGCGGCACGCCGACCCGCCCGCTCCCCCTCCCGTCGCTTCCTCTTCCTCCGCTTCTACCAACTGGAGAGAGGAGATATTAGAGTCCAAGCGACACAATACTCATGAAAAGCACCCAGAACCGACAAACCAAAGGAACAGAATCAACAGTGCTAAACCAGAGAAATCAGAATCGTCCACCTCTCATCCTGGTCTAATAATGCTGCCTCAAAGCTCTATATCAAACCTTCAGAAAGAATTAGGACGCGGAAATACAGGAGAAAATCATAAAACATTATATGACCATCAGAATCCGTCTAAACCGATCATAGTACAAACTAGTCCTTCAAAAGTAGACATGCGTCTTGAAAGATGTATAAAAGAATCTTCGGTGCGTGGAGCGATGTCCTGCGACAACAGCGACGCGGCCCGCGGGGACCGGCACCGCGCGCTGCTGCAGGAGGTGGACCGCGCCGACGCGCTGCTGCAGGCGCACATGCTCAGGGGGCCGGCCGCGCTCGCCGACCATTGGACCGATGTCATCGAAACGAGATCATTTTTGCAAAATGCTCTTCAAAGACTGCTCATGTCCGATCTCAAATACTGTCAGGCGGATAACGTGGAGCATCAGTTTTGGAAAATTTTATATTATAATTTCATTGAGGCCTTAAGAAAAAGTTTTTCTCAAGTAACGCCCGAAGTCAAGACGAAAGTCGTTAATTTGATCAATATTATAATAGAGGAAGGGAATACATATTTTGAAAATTTAGTGCACACGTTGGAAAAATGCTACAAGTTCAACATTGATGATTACATAAACGATAATCACGTTCTACCGCCGAAAGGGCTGGGTTACGTCGGACTGGCTCTAGTCTCAGTGCAAAAGTTATATGTTTTCCTCGGTGATCTGGCGCGCTATAAGGAACTCGTAAATGAGACCAACAATTACGCGAAAAGTAAACTCTGGTACACCAAAGCGCAACAAATAAATCCCAAGAACGGACGACCCTATAACCAATTGGCGATCCTGGCGATATACTCAAGAAGAAAACTAGACGCCGTGTACTACTATATGAGAAGTTTGATGTCATCGAATCCTTTTCAATCTGCCAGAGAGAGCTTATTGTCACTTTTCGATGAAAATAGAAAAAAGTATGAAGCGGCTGAACGTAAAAGGCGTGCAGCAATAGAAAAAGCGAAAAGCAGCGGCACTGAAACTGTAGCCGGCACCGGAGGCGGCACCGGCGGCGACGGCGGGCGGCGCGAGGTGTGGCTGCGGCCCGGTGACGTCACCGCCACTCCGCGACAACCTGTCATCGACGAGCAACTGTCCACGATGACTTCTGTTGAGTTGAACAAGAGCTTTATAACGAGCTATTTACATGTTCACGGGAAATTAATAACAAAAATAGGAATGGAAACCTTTCACGAAAGTGCCGGCCTCATGTTGCGGCAGTTCCGCACGCTGTTGCACCGACAGCCCCTGCCGATGCCGGCCGCTAGACTCCTTCAGTTGACCGCACTCAACATGTTTGCAGTTGAGACGACCGGTTCCACGTATAAAGGTTGTTCCGGTGCAGAGAGACCAGCCTGGTTGGAGTGCGCTCTCGGCGTATCCTTGCTCATGTTCGGAGCGCTCGTGGAAAGATGCTGTGCGTTATTGCCGGAACCAACTCACACCCAGCACCACGCTGATGCCCTGCAGCTATTACCCTCGATAAAGGTGTGGTCCGACTGGATGCTGTGTCACAGTAGTGTCTGGAACCCACCGCCTTCCTTCACCAATTTCAACGTAGAACTCGAAAGCGACTCATGGGATTGGTTAGCGAAACTCATGAACATACTCGAAATATTAGACGATAAAACGATAAAATTGGAAAACGAAATCAAAGAAGGCTACGTTTGCATCCGTTTGGCGGAGGACGCGTCGTTGGGCGGGTTCACTCCGCTCATGTACATGGAGCCGGACAAGGCGTGGGTGCCCCCGGATCCGTCGGCGCACAACCACGCCGCGGAACACGTACTGAGGATCAGGAAGCTGCTCTTCTTCGGGACCGAGTATCTGGTCGGTGTGGAGCCTCCGGTGCTGCGCTTGGAGTACCCCACTGACGCCCCGCCGCGGTACGTCAGCGCTGTGCAGAAAACTAAACCACAACACCAGCCGCTGCAACTCTTGGCCGAAGATTCCGAAGACGAAGAGAGTTCGAGGAGCGGTCCGACCAGCGTGAGCGAGGCTCCGGATGCAGACGAGGCCACCAGACGTCTGCTCCGCCGCAAGGAACAGCTGGAGAACAGGAAGGCCACACTTGAACGACAGCGACAACGTGTACAGGAAATTCTACGTAGTGATTCGACCAGTATGGAAGTGGAAGTGCGGCCCCGATGGTTAGTCCCGGATACAAATTGTTTCATCGATCATCTACCACTGTTACAAGCCGTGGTCGCTGCGCCGTCTCAGCCGTACACTCTAGCCGTGCCTCTGGTCGTAATGAGCGAGCTGGAGGGGCTGAAGAAGTGCGGTCGCGTGGGCGGCATGGCGGGCGCGGCGCTGGCGTGGGTGTGCGTGGGCGGCGGCGCGGCGGGCGTGCGCCTGGCCACGTCGCGCGGCTCGCTGCTCTCGTCCCGCGCCTTCACCGCCGAGCGCGACGCCGACCGCGCGACCAACGACGACCGCGTGCTCTCCACCGCCCTCAACTTGCACGCTAACCTCGTGGCCGCCCAACCACACCCAGACACCGAAACGAAGCCAGAGGAAGGAAACGGCCCTGGCCGCTGA
Protein
MDDEIKENRRNKPQQKFYKPGSGPLRRSRYGLDCKMDPSDVNNSSRRYNTLYGSHNSVNDDLSDAYSEGSMTNVRQNHKKSEQLSIVEDQALQTNKTQIQGILEAHRGKTGLTEIIKAEIVTILIVVEALDKILKLDLYHQVFMSTILLGAIMIVTVEVWRHLLAVTFLLLEDLQDYKNENHYMMTSSIESQNDFISNASQNGTSNASVDGSNIHYEKSNHEEDNDCNGPTMSQVTKQLDLTSLDWTEEVEKNIKLDDICDTSSSFSEQLKKSNIDEVRTSEPKESKRKSKRKDKRSSSRSMRNSDKRERARKDSTASIHHELEHSRKDSNVSIHHEAVPACLKRRERERRDSHRSNRSSNIGNSRDDLDRWRSLRSYSREQSTEGRIVSQCNSRDTSTNRATSPRDGDGFRVPCAVSKSAAWLSSQRKNSVPCNTRTGSSERGRRSPGGGEGGAGEAGGSRRSRRRLQKRHARHADPPAPPPVASSSSASTNWREEILESKRHNTHEKHPEPTNQRNRINSAKPEKSESSTSHPGLIMLPQSSISNLQKELGRGNTGENHKTLYDHQNPSKPIIVQTSPSKVDMRLERCIKESSVRGAMSCDNSDAARGDRHRALLQEVDRADALLQAHMLRGPAALADHWTDVIETRSFLQNALQRLLMSDLKYCQADNVEHQFWKILYYNFIEALRKSFSQVTPEVKTKVVNLINIIIEEGNTYFENLVHTLEKCYKFNIDDYINDNHVLPPKGLGYVGLALVSVQKLYVFLGDLARYKELVNETNNYAKSKLWYTKAQQINPKNGRPYNQLAILAIYSRRKLDAVYYYMRSLMSSNPFQSARESLLSLFDENRKKYEAAERKRRAAIEKAKSSGTETVAGTGGGTGGDGGRREVWLRPGDVTATPRQPVIDEQLSTMTSVELNKSFITSYLHVHGKLITKIGMETFHESAGLMLRQFRTLLHRQPLPMPAARLLQLTALNMFAVETTGSTYKGCSGAERPAWLECALGVSLLMFGALVERCCALLPEPTHTQHHADALQLLPSIKVWSDWMLCHSSVWNPPPSFTNFNVELESDSWDWLAKLMNILEILDDKTIKLENEIKEGYVCIRLAEDASLGGFTPLMYMEPDKAWVPPDPSAHNHAAEHVLRIRKLLFFGTEYLVGVEPPVLRLEYPTDAPPRYVSAVQKTKPQHQPLQLLAEDSEDEESSRSGPTSVSEAPDADEATRRLLRRKEQLENRKATLERQRQRVQEILRSDSTSMEVEVRPRWLVPDTNCFIDHLPLLQAVVAAPSQPYTLAVPLVVMSELEGLKKCGRVGGMAGAALAWVCVGGGAAGVRLATSRGSLLSSRAFTAERDADRATNDDRVLSTALNLHANLVAAQPHPDTETKPEEGNGPGR

Summary

Uniprot
A0A194QRD9  
Pubmed
26354079   
EMBL
KQ461198    KPJ06101.1   
Proteomes
UP000053240   
Pfam
PF10374   EST1        + More
PF13638   PIN_4
PF10373   EST1_DNA_bind
Interpro
IPR011990   TPR-like_helical_dom_sf        + More
IPR019458   EST1       
IPR029060   PIN-like_dom_sf       
IPR018834   DNA/RNA-bd_Est1-type       
IPR002716   PIN_dom       
SUPFAM
SSF88723   SSF88723        + More
SSF48452   SSF48452       
Gene 3D
1.25.40.10    
ProteinModelPortal
A0A194QRD9  
PDB
4UM2     E-value=1.02097e-84,     Score=804

Ontologies

KEGG
101746324    K11124 protein SMG6 [EC:3.1.-.-] | (RefSeq) telomerase-binding protein EST1A
PATHWAY
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)
GO
GO:0005515   GO:0000166   GO:0006470   GO:0008138   GO:0003677   GO:0004725   GO:0004887   GO:0043401   GO:0003707   GO:0043565  

Topology

Length:
1389
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
27.93324
Exp number, first 60 AAs:
0
Total prob of N-in:
0.95864
inside
1  -  137
TMhelix
138  -  160
outside
161  -  1389
 
 

Population Genetic Test Statistics

Pi
227.072096
Theta
175.859714
Tajima's D
1.140198
CLR
0.095653
CSRT
0.699265036748163
Interpretation
Uncertain
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