Gene

KWMTBOMO05678  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006832

Annotation

TAR_DNA-binding_protein_43_[Operophtera_brumata]

Location

Bomo_Chr10(-):7916594-7918247      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.351

CDS

ATGTCTTTCGAGTATTTGCCCGTTGCTGAAGACGAAAATGAAGAACCCATAGAACTGCCTATCGAAGAAGATGGAGCTTTGATGCTATCGACTGTGTCTGCACAGTTTCCAGGTTGCTGCGGATTGAAATATCGACACCCTGAAACGAAAACCATCAGGGGAATTCGACTAAGAGATGGTCGACTATATCCTCCTCCAGAAGGATGGGGAAATTATTTGTATATATGTAGTTTTCCTAAAGAAAATAAACGCAAACTTGGTGAAAATTCCGAGTCCACAATTATGAGACATAAAAGAAATGACACCTTATGTTCGGACCTGATAGTTTTGGGACTCCCTTGGAAAGCCACAGAGCAGACAGTGCGAGAATATTTTGAAAAATTTGGTGAAGTATTAATGGCTCAGCTGAAAAGAGACCCAAAAACGGGAATGTCTAAAGGTTTCGCTTTTATTCGATTTGCATCTTATACATCCCAAATGAGAGTTCTTGCTCAAAGGCACATGATTGATGGGAGGTGGTGTGATGTAAGGATACCAAATTCCAAAGAAGGATCTATACCATCTATGCCTTGTAAAGTTTTTGTTGGCCGCTGTACTGAAGAATTATCTGCCAATGACTTGAGAGAGTATTTTTCTCAATTTGGAGAAGTTACTGATGTGTTCATCCCAAAACCATTTAGGGCATTCAGTTTTATAACATTTCTTGACCCAGAAGTTGCGCAGAGTCTATGTGGGCAAGACCATATAATAAAAGGTGTTTCTGTTAATGTTTCGAATGCATCTCCAAAGCAAAACAAAAGTGGTACAAACCAACGTGCCATGCCTAGTAGAAGTTATGATGAAGGTCATCCACACAATGTGTCTAATAATAATTCTTGGAGCAACCGAAACATGGATATGGTTAATATGCAAGCACTTGGTATGTCTGGTCAACATGGACAAACAGCTGTAGCTGGTGGTGGAGGACAAGCACAAGGTGGCAGTATGCCTATAGGAATGGGAGGACTACCTGTAAATCAAGCTTTAGTAGCAGCAGCTCTTAACCAGGCAGCTGGTTGGGGTCTTATCAACAACATCCCTTCAGGTGCATCAGAACAAGGTGCCTTTGCTGGTCCAGCATCATCGGCACCTCCAGCACCACCAAACTTCCTGTCTTGGATGCAACAAGGTAATTCAGCACAAGGACCCTCTAGTCAGTGGGGACAAAGACATCAGTCCCAAGGCCACTCTGTCTGA

Protein

MSFEYLPVAEDENEEPIELPIEEDGALMLSTVSAQFPGCCGLKYRHPETKTIRGIRLRDGRLYPPPEGWGNYLYICSFPKENKRKLGENSESTIMRHKRNDTLCSDLIVLGLPWKATEQTVREYFEKFGEVLMAQLKRDPKTGMSKGFAFIRFASYTSQMRVLAQRHMIDGRWCDVRIPNSKEGSIPSMPCKVFVGRCTEELSANDLREYFSQFGEVTDVFIPKPFRAFSFITFLDPEVAQSLCGQDHIIKGVSVNVSNASPKQNKSGTNQRAMPSRSYDEGHPHNVSNNNSWSNRNMDMVNMQALGMSGQHGQTAVAGGGGQAQGGSMPIGMGGLPVNQALVAAALNQAAGWGLINNIPSGASEQGAFAGPASSAPPAPPNFLSWMQQGNSAQGPSSQWGQRHQSQGHSV

Uniprot

H9JBD7   A0A1E1W3L5   A0A212EIJ4   A0A2H1VAS8   A0A0L7KS51   A0A194QKQ3   + More
A0A194PK77   D6WYQ8   A0A1Y1N911   V9ICK0   A0A195EHV4   F4W8F4   A0A195FB69   A0A158NK58   A0A151X6Y2   A0A0T6BDA3   A0A3L8DBB8   K7J2F6   A0A194R787   A0A194PKA0   S4NNQ6   A0A0K8TS76   A0A0K8TR16   A0A1B0DKM3   A0A212F056   A0A087TT60  

Pubmed

19121390    22118469    26227816    26354079    18362917    19820115    + More
28004739    21719571    21347285    30249741    20075255    23622113    26369729   

EMBL

BABH01030827    GDQN01009477    JAT81577.1    AGBW02014631    OWR41291.1    ODYU01001561    + More
SOQ37948.1    JTDY01006591    KOB65854.1    KQ461198    KPJ06102.1    KQ459606    KPI91500.1    KQ971357    EFA08408.2    GEZM01009643    JAV94434.1    JR038232    AEY58171.1    KQ978881    KYN27833.1    GL887908    EGI69445.1    KQ981693    KYN37626.1    ADTU01018711    ADTU01018712    ADTU01018713    ADTU01018714    KQ982472    KYQ56079.1    LJIG01001651    KRT85289.1    QOIP01000011    RLU17179.1    KQ460615    KPJ13688.1    KQ459602    KPI93438.1    GAIX01013836    JAA78724.1    GDAI01000818    JAI16785.1    GDAI01000794    JAI16809.1    AJVK01067941    AGBW02011160    OWR47129.1    KK116626    KFM68299.1   

Proteomes

UP000005204    UP000007151    UP000037510    UP000053240    UP000053268    UP000007266    + More
UP000078492    UP000007755    UP000078541    UP000005205    UP000075809    UP000279307    UP000002358    UP000092462    UP000054359   

PRIDE

H9JBD7   

Pfam

PF00076   RRM_1        + More
PF18694   TDP43_N

Interpro

IPR041105   TDP43_N        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

H9JBD7   A0A1E1W3L5   A0A212EIJ4   A0A2H1VAS8   A0A0L7KS51   A0A194QKQ3   + More
A0A194PK77   D6WYQ8   A0A1Y1N911   V9ICK0   A0A195EHV4   F4W8F4   A0A195FB69   A0A158NK58   A0A151X6Y2   A0A0T6BDA3   A0A3L8DBB8   K7J2F6   A0A194R787   A0A194PKA0   S4NNQ6   A0A0K8TS76   A0A0K8TR16   A0A1B0DKM3   A0A212F056   A0A087TT60  

PDB

4BS2     E-value=2.05492e-63,     Score=615

KEGG

101737436    no KO assigned | (RefSeq) TAR DNA-binding protein 43-like

GO

GO:0003723   GO:0003677   GO:0045292   GO:0000381   GO:0005634   GO:0016607   GO:0003676   GO:0000166   GO:0006470   GO:0008138   GO:0004725   GO:0004887   GO:0043401   GO:0003707   GO:0043565  

Length:

411

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02229

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00134

outside

1  -  411

 

 

Pi

233.623756

Theta

221.083196

Tajima's D

0.54268

CLR

64.600757

CSRT

0.522073896305185

Interpretation

Uncertain