SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05662  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA006796
Annotation
PREDICTED:_RNA-binding_protein_cabeza-like_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.695
 

Sequence

CDS
ATGGCGGTGGGCAAGGTGGCTATAACCAAGGCGGATACTCTGGGCAATCTCAAAATCAAGAATGGAACCAACAAAGTTCAGGTGGTAATTCCTATGGAGGAAGTAATCAACAAAGTAGTAACTATGGTCAGAGCTATGGAAGTGGTTATGATAGTGGCGGTGGCTATGAAAGAAGTAATGATGGGTATAATTCGAGTGGAGGAGAGCGTGGCGGGAGCAATTATGGAGGCAGTGATCGTGGTGGTTCTGGCTATGGCGGTGACAGAGGCGGCAGCGGCTATTCTGGAGGTGGAGACCGTGGCGGGTATGGTGGAGGTGATCGTTCAAACAACTTCAGTAGAGATGGGGGAAATAGAGACGGTGGATATGGTGGCGGAGGCAGGGGGGGTGGTTTTAACAAAGGAGGCGGCGGAAGCGGTGGATATGCCGACCGTGGTGGCGGTGGTGGTGGTGGCGGTGATATGGTAA
Protein
MAVGKVAITKADTLGNLKIKNGTNKVQVVIPMEEVINKVVTMVRAMEVVMIVAVAMKEVMMGIIRVEESVAGAIMEAVIVVVLAMAVTEAAAAILEVETVAGMVEVIVQTTSVEMGEIETVDMVAEAGGVVLTKEAAEAVDMPTVVAVVVVAVIW

Summary

Uniprot
Pfam
PF00076   RRM_1
Interpro
IPR001876   Znf_RanBP2        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034870   TET_fam       
IPR035979   RBD_domain_sf       
IPR036443   Znf_RanBP2_sf       
SUPFAM
SSF90209   SSF90209        + More
SSF54928   SSF54928       
Gene 3D
ProteinModelPortal

Ontologies

Topology

Length:
155
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
26.70959
Exp number, first 60 AAs:
6.66838
Total prob of N-in:
0.79412
outside
1  -  155
 
 

Population Genetic Test Statistics

Pi
191.427074
Theta
197.940677
Tajima's D
-0.551701
CLR
2.389997
CSRT
0.229738513074346
Interpretation
Uncertain
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