Silkworm Genome Informatics Database

Gene

KWMTBOMO05661 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA006541

Annotation

polymerase_delta_interacting_protein_3_[Bombyx_mori]

Location

Bomo_Chr10(-):7498240-7509332 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.057

CDS

ATGTCGTCCTTGATCGAAATGAGCTTAGAGGAAATCATAAAGAAAAAGAAAATAAACATCAGGTCTAAACGACAAAATAAACATGGAAAGCAAGGTGTTCAGCAAGGAGCTCTCAAAGCTAAACCACAAGTTATGGATGCTAGAAATAAAATAATATCAAAGAAGAGAATTCAGATAACAGATGCTCGAGACAAATTGGCCGAACTTGCAAAGCAGAGGGATGCTAGATTGAAGCTAGAACATCTCAAAATGCAAAGAAGAGGACAAATGACACCTGTAAATGTTTTTCCAAAGGCCACCAAATTCACTCGAACTGTTGTCAACAAAGATAGAGTGTTCACAGATACATCCAGGCAAGTTGTCTCACAGCCTCTGAACACACCTAATCTTAGACGTCAAATCAACAATAAACGTAGATTTGTAGGAAATAAAGCAGTTGGTACACAAAAAATACATAAAAATCCACAACCCCAAAAAATTCTCAGAACAGTGGAAAATGATATAGAAATTATAGATGATGATGATGATGATCCAATGGGGGAAGAATATATTCCAACAAAATTGTTGAACCGCAAAGCTAGTCTACAACTTAAAATAATTACTCACAACAATGGTGCAAGAGATAAACCACCCAGTACCACTAATCGAACTGCCATAAGCGAAAGGGAGTATAGCCCACCAAGACCACCTTCGATTCTCAAGAAACGTCCAATGGCTGCTCTCAAATCTAACAATAAAGCTTACAACTCTGACAAGACGGCTCCAGAATTTAGAATCATTGTTAGTAGTTTGAAAAGCACAGTAACAGCTGGAGATATAGAGGAATTATTTGGAGATGTAGGTGGCATGGTCGAATCGCGTTTGGTTCGTCCCGGTACTGCAGAAGTAATTTATAAAACTCAAGAAGATGCACAGAGGGCTGTAGATTTATATCACAATCGACAGCTAGACGGACAGCCTATGAATTGCTTACTTGTCGTGCCTAGAACACTGAATTCTTCTTCGAGAAACAACAGTAAACCAGCATTATACAGCACTAACTCTAACGTAGAACCTGACTTATCAACGTTCCACAAAGTATTATTTAGTAATTTATAA

Protein

MSSLIEMSLEEIIKKKKINIRSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQINNKRRFVGNKAVGTQKIHKNPQPQKILRTVENDIEIIDDDDDDPMGEEYIPTKLLNRKASLQLKIITHNNGARDKPPSTTNRTAISEREYSPPRPPSILKKRPMAALKSNNKAYNSDKTAPEFRIIVSSLKSTVTAGDIEELFGDVGGMVESRLVRPGTAEVIYKTQEDAQRAVDLYHNRQLDGQPMNCLLVVPRTLNSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL

Uniprot

Q0ZAL5 A0A2A4JM16 A0A2A4JNG1 A0A1E1W0Q0 S4PWT4 A0A212ERP6 + More
A0A194QL70 A0A194PFQ3 I4DNV1 U5EYF8

Pubmed

23622113 22118469 26354079 22651552

EMBL

DQ648524 ABG42999.1 NWSH01001013 PCG73125.1 PCG73124.1 GDQN01010489 + More
GDQN01005703 JAT80565.1 JAT85351.1 GAIX01006233 JAA86327.1 AGBW02012957 OWR44168.1 KQ461198 KPJ06124.1 KQ459606 KPI91529.1 AK403152 BAM19591.1 GANO01000385 JAB59486.1

Proteomes

UP000218220 UP000007151 UP000053240 UP000053268

PRIDE

Q0ZAL5

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf
IPR034784   PDIP3_RRM
IPR036443   Znf_RanBP2_sf
IPR034870   TET_fam
IPR001876   Znf_RanBP2

SUPFAM

SSF54928 SSF54928 + More
SSF90209 SSF90209

Gene 3D

3.30.70.330

CDD

cd12681 RRM_SKAR

ProteinModelPortal

Q0ZAL5 A0A2A4JM16 A0A2A4JNG1 A0A1E1W0Q0 S4PWT4 A0A212ERP6 + More
A0A194QL70 A0A194PFQ3 I4DNV1 U5EYF8

PDB

3ULH E-value=0.000348835, Score=104

KEGG

733075 K22414 polymerase delta-interacting protein 3 | (RefSeq) Poldip3; polymerase delta interacting prote

GO

GO:0003723 GO:0006406 GO:0005623 GO:0046872 GO:0006355 GO:0000166 GO:0003676 GO:0003729 GO:0004930 GO:0007186 GO:0035240 GO:0016021 GO:0008270 GO:0003700 GO:0043565

PANTHER

PTHR23238

Length:

365

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00229

outside

1 - 365

Pi

291.330127

Theta

170.431092

Tajima's D

1.337653

CLR

0.366776

CSRT

0.748112594370281

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics