Silkworm Genome Informatics Database

Gene

KWMTBOMO05659

Pre Gene Modal

BGIBMGA006793

Annotation

PREDICTED:_MICAL-like_protein_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):7475703-7481711 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.631

CDS

ATGTACAACTCTTCTATGGCGACGAGCACGCCGAACCTGCCGTCGAGCGCGCCTCGACGTAAGAAACAGAAGGCCCCTCCGCCCCCTGTGGTACTGGTTTCAGAGCCGCAACAGCCGGGCACGTCAATGGAAGATGTTGCCAGCCTATCATCGCACAGTTCTTACAATTCTACTGCTAACTCGAGTCACATGTACGGAAAAAGCACTCCAGTGCAGCTAAGGAAGAACATAACGGCACCAACTCCTCCTGACAGCATATCAACGCTGTCCGAATGTGCGGGCTCTCTTGAAAAAGGCGTCGATACATCCGGTCTCGGAAGTAACAACTCTAGTTTAGTTGGGCGACGAACTAAGGGCCCAGCGCCGGGCCTCCCGCTGCCGGAACGACGCGAAGTGAAACTTCAGATGTCCCCAGAAGAGTTGCAAGTGCAGCTCGATCTCCTGGAAACGCAGCAGCTCGGGCTGGAGCGGCAGGGGGTACTCATCGAGAAGATGATACGGGATAAGTGTGAGGGCGACGAGCCATCCTCTGTGCCGCAAGAAGAGGTCGAAGATCTTGTGATACAACTCTGCGAACTTGTCAACGAGAAGAACGATCTGTTCAGGAAACAAACGGAACTTATGTATATCCGTCGACAACAACGTCTAGAACAGGAGCAAGCAGATATCGAGCACGAGATTAGAATAATCCAATCGCGTCCAGCGGTCAACCGTATTGACGCGGATAAGGCGCGGGAAGAGGAGCTGGTCACGCGGCTCGTGGAGATAGTACGTCTGCGCGACGAGCTGGTGCAGCAGCTGGACGCGGAGCGGCGCCGCGAGCAGCAGGAGGACCTCGCCATCGCAGCGTCCATCGCCAGTAAACGAGCTCAGAGACAAAGCGAATCAAACAGTTCTTCAATCAAATCAGTTGAGGTTGCAGCTCCGAAGAAGAACAAAGTAAAGGATAAAATGAAAAAACAATTCAAAAAAGCAAAACACACATTAATTTCAAAGAAAAAGGACGATTCGCCTGAACACAAAGAAGAAAAAGAACGTAAGAAATCTAAATAA

Protein

MYNSSMATSTPNLPSSAPRRKKQKAPPPPVVLVSEPQQPGTSMEDVASLSSHSSYNSTANSSHMYGKSTPVQLRKNITAPTPPDSISTLSECAGSLEKGVDTSGLGSNNSSLVGRRTKGPAPGLPLPERREVKLQMSPEELQVQLDLLETQQLGLERQGVLIEKMIRDKCEGDEPSSVPQEEVEDLVIQLCELVNEKNDLFRKQTELMYIRRQQRLEQEQADIEHEIRIIQSRPAVNRIDADKAREEELVTRLVEIVRLRDELVQQLDAERRREQQEDLAIAASIASKRAQRQSESNSSSIKSVEVAAPKKNKVKDKMKKQFKKAKHTLISKKKDDSPEHKEEKERKKSK

Uniprot

H9JB98 A0A1E1W4G5 A0A2A4J798 A0A1E1WP26 A0A3S2LSE8 A0A2H1W597 + More
A0A212ERP8 A0A194QRG3 A0A194PDW5 A0A0L7KX36

Pubmed

19121390 22118469 26354079 26227816

EMBL

BABH01008835 GDQN01009181 GDQN01000541 JAT81873.1 JAT90513.1 NWSH01002908 + More
PCG67320.1 GDQN01010580 GDQN01002309 JAT80474.1 JAT88745.1 RSAL01000258 RVE43377.1 ODYU01006404 SOQ48218.1 AGBW02012957 OWR44170.1 KQ461198 KPJ06126.1 KQ459606 KPI91531.1 JTDY01004745 KOB67807.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 + More
UP000037510

PRIDE

H9JB98

Pfam

PF12130   DUF3585        + More
PF00307   CH
PF00412   LIM

Interpro

IPR022735   bMERB_dom        + More
IPR028563   MICAL-L
IPR001781   Znf_LIM
IPR036872   CH_dom_sf
IPR001715   CH-domain

SUPFAM

SSF47576 SSF47576

Gene 3D

1.10.418.10

CDD

cd00014 CH

ProteinModelPortal

H9JB98 A0A1E1W4G5 A0A2A4J798 A0A1E1WP26 A0A3S2LSE8 A0A2H1W597 + More
A0A212ERP8 A0A194QRG3 A0A194PDW5 A0A0L7KX36

PDB

5SZK E-value=1.38174e-06, Score=124

KEGG

101742557 K19948 MICAL-like protein 1 | (RefSeq) MICAL-like protein 1

GO

GO:0017137 GO:0005623 GO:0032456 GO:0046872

PANTHER

PTHR23167:SF44

Length:

350

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.06486

outside

1 - 350

Pi

230.884138

Theta

164.673246

Tajima's D

1.787074

CLR

0.229522

CSRT

0.847707614619269

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics