Silkworm Genome Informatics Database

Gene

KWMTBOMO05658

Pre Gene Modal

BGIBMGA006792

Annotation

PREDICTED:_MICAL-like_protein_1_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):7467673-7473907 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.448

CDS

ATGTCGGAAAGAAAAGGCACAAAAGCTCTGGAGTTGTGGTGTAAGCGTTTAATTAAAGATTGTCCGGATATACACATAGAAAATATGACAACATCTTGGAGAAATGGAATGGCATTTTGTGCTTTAGTTCATCATTTTAGGCCAGATTTGATTGATATGTCGAAATTAAAACCTGAAAATATTTATGAAAACAATCAACTAGCATTTAACATAGCTGAAAAATACCTTGGAATACCTGCATTATTGGACCCTGAAGACATGGTAGATAATGACGTTCCGGACAGATTATCAATTTTGACTTATTTATCCCAATTCTACCAACGCCTCAGTCATACAGTGAACACTAAGGTGTCAGAAAATGAATCGAAAGCTTTACCTACAAAAACAACAGAACCACCTACACCAGTAAGATTTGGCAAGACCGGTCTTGATAAATGCACTTCATGTGGCTTACCTGTTTATTTAGCTCAACGTCTGATGGTAGCCCATAAACTCTACCACAGAAGATGTTTCCGTTGTTCAAAATGCTCAGGACACCTGAATCCTAAGAGTTATGAAACAGTTGAAGGATCTGATTTTACCTGTGATAGTTGTAAAAATGATAAAACTCTATCTAAACTTTTGAACAACAACAATGATCAAAATCTAATGGGCATGTTGGCATTCACTGATGTTTTAGATGAGCCAAAACCAAAAGATAATTTGTGTGAAGATAAAATTAGTTTCAGGGAAAACAAACGACCACAGTCTGTTCTGGACAAAATAAGTATGTTCGAAAAAAATATAGAAAAAGATGTCCCCATAGATAACAGGATGAATAATATTTTAAAAGAAAATTCCACTCAGATAAATATAGAAGTAAAAACTGAAATACTGAATGAGCATGACCCAAAAACTGTTCTTGATAGAACAGAGAGTAGTAATAAACCAATTAATAATTTACCAGACGTAGTATACAAAAGTAATGTTAAAAAATTCAATTTCTTACAAACACAACTTTCTGACGGTAGCTGCAATGAATCAACTGTTGAAGAGAAAACTTTACCTAAATCTGAACACAAGTTGCAAGAAGATGTGAGTATTGATGTAAAAAGTTTCAACAAAGATGTTGTCCTAGAAAACAGTGAACCATTAATAGTCAATGATTATAACAATATAACGGACGATAGCAGACTAGCGAACAGTGTTAACGTTACACTAAGTAGCACTGAACCGATTTCTGAAGAGCCTATCGTATTAGAACCAGAAATCAAAATAAATGTACCGCCGCGACGTAAAAAGCAAATGGGTCAAGATTTTAAAAAGATATCAAAACCAAAAGGCGCACCAACTGTTACACCTCAAGAGAACGAAGAGTATCCTGATCATTTGAACCCATTTTCGGATGATGATGATGAGGTTCAGGTCTCCCAAAATCCTTCCAAGACAGTGAGCACTAATCCTTTCGGCAGCAGCGACGATGAAAACGAGGAACTACCACCAATACCACCGATTTCAAAGCAACCTGAAACACTACCAGTAAAACGTCTCATAGCCGTCAATCCATTTTGGTCCGACGGAGAAGAACCTTCCACAGACGATGAAATTGACGACTTAAGGTAA

Protein

MSERKGTKALELWCKRLIKDCPDIHIENMTTSWRNGMAFCALVHHFRPDLIDMSKLKPENIYENNQLAFNIAEKYLGIPALLDPEDMVDNDVPDRLSILTYLSQFYQRLSHTVNTKVSENESKALPTKTTEPPTPVRFGKTGLDKCTSCGLPVYLAQRLMVAHKLYHRRCFRCSKCSGHLNPKSYETVEGSDFTCDSCKNDKTLSKLLNNNNDQNLMGMLAFTDVLDEPKPKDNLCEDKISFRENKRPQSVLDKISMFEKNIEKDVPIDNRMNNILKENSTQINIEVKTEILNEHDPKTVLDRTESSNKPINNLPDVVYKSNVKKFNFLQTQLSDGSCNESTVEEKTLPKSEHKLQEDVSIDVKSFNKDVVLENSEPLIVNDYNNITDDSRLANSVNVTLSSTEPISEEPIVLEPEIKINVPPRRKKQMGQDFKKISKPKGAPTVTPQENEEYPDHLNPFSDDDDEVQVSQNPSKTVSTNPFGSSDDENEELPPIPPISKQPETLPVKRLIAVNPFWSDGEEPSTDDEIDDLR

Uniprot

A0A2H1W597 A0A1E1WP26 A0A2A4J798 A0A2A4J608 A0A1E1WK63 A0A194QRG3 + More
A0A194PDW5 A0A3S2LSE8 A0A212ERP8 A0A0L7KX36 B4HGN1 A0A1W4VKA9 B4PHA9 A0A0J9RUA1 Q9VU34 D6X075 A0A182MHY0

Pubmed

26354079 22118469 26227816 17994087 17550304 22936249 + More
10731132 12537568 12537572 12537573 12537574 16110336 17569856 17569867 26109357 26109356 18362917 19820115

EMBL

ODYU01006404 SOQ48218.1 GDQN01010580 GDQN01002309 JAT80474.1 JAT88745.1 + More
NWSH01002908 PCG67320.1 PCG67319.1 GDQN01003661 GDQN01002910 JAT87393.1 JAT88144.1 KQ461198 KPJ06126.1 KQ459606 KPI91531.1 RSAL01000258 RVE43377.1 AGBW02012957 OWR44170.1 JTDY01004745 KOB67807.1 CH480815 EDW41339.1 CM000159 EDW94370.1 CM002912 KMY99346.1 AE014296 AY051991 AF520716 AAF49857.2 AAK93415.1 AAM55245.1 KQ971371 EFA10033.2 AXCM01000506

Proteomes

UP000218220 UP000053240 UP000053268 UP000283053 UP000007151 UP000037510 + More
UP000001292 UP000192221 UP000002282 UP000000803 UP000007266 UP000075883

PRIDE

Q9VU34

Pfam

PF00412   LIM        + More
PF12130   DUF3585
PF00307   CH

Interpro

IPR001715   CH-domain        + More
IPR036872   CH_dom_sf
IPR028563   MICAL-L
IPR001781   Znf_LIM
IPR022735   bMERB_dom

SUPFAM

SSF47576 SSF47576

Gene 3D

1.10.418.10

CDD

cd00014 CH

ProteinModelPortal

A0A2H1W597 A0A1E1WP26 A0A2A4J798 A0A2A4J608 A0A1E1WK63 A0A194QRG3 + More
A0A194PDW5 A0A3S2LSE8 A0A212ERP8 A0A0L7KX36 B4HGN1 A0A1W4VKA9 B4PHA9 A0A0J9RUA1 Q9VU34 D6X075 A0A182MHY0

PDB

2D89 E-value=1.81309e-23, Score=272

KEGG

101742557 K19948 MICAL-like protein 1 | (RefSeq) MICAL-like protein 1

GO

GO:0032456 GO:0046872 GO:0005623 GO:0017137 GO:0003779 GO:0005515 GO:0008270 GO:0016020 GO:0004930 GO:0007186 GO:0035240 GO:0016021 GO:0003700 GO:0043565

PANTHER

PTHR23167:SF44

Length:

533

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00797999999999999

Exp number, first 60 AAs:

0.00743

Total prob of N-in:

0.00386

outside

1 - 533

Pi

214.088401

Theta

171.922637

Tajima's D

0.964338

CLR

0.066975

CSRT

0.654917254137293

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics