SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05646
Pre Gene Modal
BGIBMGA006545
Annotation
kinesin-like_protein_Ncd_[Bombyx_mori]
Full name
Kinesin-like protein       + More
Protein claret segregational      
Location in the cell
Nuclear   Reliability : 4.611
 

Sequence

CDS
ATGTCCAAGATACCAAAACTACCAACAATATCAAAAGAAAATAGATTTGGACAATTTCATAATCGGCCCATATCCAGAACTATTGCTAATGGTCTCAGTGATGTTGATAAGAAAAATTTAATCACTAATCATACTAGACCTTTACGAAATGGCCCACCTGTTTCTGCTGCTGCACCTCGGATTAAGAGATCTGCAACTGCACCATCATCGACAACAATTCCGAATAATGTGACAAAAGTTGAAAAAAGATCAACTGTGGCTCCGAAAATCCCTCCTTATGACTTCAAAGCAAGATTCAATGACTTGTTAGAAAAACATAAAAAAATGAAGAGTGAGTTTACTGATTTAAAAGACAAACATTTAGAAGTCTCAGATGAATATGAAAAGATCAAAGAGACATTCCAAAGCTGTAGCAATGAAAGAGATATTCTTAAGGCCAATTTAAGTGTTAAAACTTTAGAGTATGATGAAATTAAAGTTAATTTTGATGTAATGAAAACAGAAAATGAAGATCTACAACGTAAGACAAAGCTTCTAGAGGAAGTTACATTTAGTCTTAAACAGAAATCTTTTGAACTAGATCAAGTTCAGACAGATTTAAATTCTTTAAGAAGACGCCACAGCAGCCTACAAGAAGAAGCAGAAGCACTAAGAGTACTCACTGACCAACTAAAAAAAAAATGCATTGAATATGACAAACTAAAATTAGATTTTACTGAAGCTCAGGAAAATATTATCAAATATAAAACTGATTCTGAAGCTCTCCAAAATATTTTGGCATCAATGTATAAAGAGCAGAGAGACCTTAGGAATGCTATTCAAGATTTAAAGGGTAACATTCGTGTATACTGCCGAATTAGACCACCTCTAAGTATTGAAATAACAAAGCCACTGTTTAATCTAAATGTTGTTGATGCTTGTTCTATAGAAGTTGAAAAAATAGAATTACTTAATTCAGCCAGAAAAACAAAACCACAATTATTTACTTTTGATGGCATATTTACTCCACATGCATCTCAGGAAGATGTTTTTGCAGAAGTTTCGTCAATGGTCCAATCGGCTTTAGATGGGTATAATGTGTGCATATTTGCTTATGGACAGACAGGATCAGGCAAGACATATACAATGGAAGGAGGTTGTGGAACCGAGCAGTATGGTATTATACCACGAGCCTTTAACATGATTTTTACATGCATGGAAGATTTGAAAAGAATGGGCTGGGAACTTACAATAAAAGCTTCATTTTTAGAGATTTACAATGAAGTCATATATGATTTACTCAATTCCAGTAAGGACCAGGAAAATCATGAAATTAAAATGGTTAATTCAAAGGGTGGTGATGTATATGTGTCAAACTTGAAAGAAGAAGAAGTCAAAAGTTCACACGAATTCATCAGGCTGATGATATTTGCCCAAAGAAACAGACAAACTGCTGCTACATTGAACAATGAACGCAGCTCCAGATCTCATTCGGTGGCTCAAATTAAAATAGCTGCTATAAATGAGAAGCGAAAGGAAAAGTACACTAGTAATTTAAATCTAGTTGACTTAGCTGGGTCTGAAAGTGGAAAGACAACACAAAGAATGGATGAAACTAAACATATCAATAGGTCTTTGTCTGAATTATCTAAAGTTATTCTTTCCCTCCAAACAAATCAGATGCATATTCCTTACAGAAATTCCAAATTGACTCACTTATTAATGCCTAGTCTTGGTGGCAACTCTAAGACACTTATGTTGGTCAATATCAATCAATTTGATGAGTGCTTTAGTGAAACTTTGAATTCGTTGAGGTTTGCTACAAAAGTCAATAACTGTAGAGTAGTTAAGGCCAAGAAGAACCTATGTATGGTCGACACTTAG
Protein
MSKIPKLPTISKENRFGQFHNRPISRTIANGLSDVDKKNLITNHTRPLRNGPPVSAAAPRIKRSATAPSSTTIPNNVTKVEKRSTVAPKIPPYDFKARFNDLLEKHKKMKSEFTDLKDKHLEVSDEYEKIKETFQSCSNERDILKANLSVKTLEYDEIKVNFDVMKTENEDLQRKTKLLEEVTFSLKQKSFELDQVQTDLNSLRRRHSSLQEEAEALRVLTDQLKKKCIEYDKLKLDFTEAQENIIKYKTDSEALQNILASMYKEQRDLRNAIQDLKGNIRVYCRIRPPLSIEITKPLFNLNVVDACSIEVEKIELLNSARKTKPQLFTFDGIFTPHASQEDVFAEVSSMVQSALDGYNVCIFAYGQTGSGKTYTMEGGCGTEQYGIIPRAFNMIFTCMEDLKRMGWELTIKASFLEIYNEVIYDLLNSSKDQENHEIKMVNSKGGDVYVSNLKEEEVKSSHEFIRLMIFAQRNRQTAATLNNERSSRSHSVAQIKIAAINEKRKEKYTSNLNLVDLAGSESGKTTQRMDETKHINRSLSELSKVILSLQTNQMHIPYRNSKLTHLLMPSLGGNSKTLMLVNINQFDECFSETLNSLRFATKVNNCRVVKAKKNLCMVDT

Summary

Description
NCD is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The NCD motor activity is directed toward the microtubule's minus end.
Similarity
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. NCD subfamily.
Keywords
3D-structure   ATP-binding   Cell cycle   Cell division   Coiled coil   Complete proteome   Cytoplasm   Cytoskeleton   Meiosis   Microtubule   Mitosis   Motor protein   Nucleotide-binding   Phosphoprotein   Reference proteome  
Feature
chain  Protein claret segregational
EMBL
BABH01008799    EF092449    ABK92269.1    RSAL01000080    RVE48611.1    NWSH01002607    + More
PCG67865.1    ODYU01009576    SOQ54101.1    JTDY01000483    KOB76973.1    AGBW02009576    OWR50395.1    KQ459606    KPI91542.1    KQ461198    KPJ06137.1    GFDL01009108    JAV25937.1    GFDL01009075    JAV25970.1    UFQS01000177    UFQT01000177    SSX00803.1    SSX21183.1    DS232269    EDS38811.1    CP012526    ALC46920.1    APCN01001975    AAAB01008799    EAA03777.5    CM000160    EDW98246.1    JXUM01140582    JXUM01140583    KQ569087    KXJ68769.1    ATLV01019658    KE525276    KFB44479.1    JRES01001160    KNC25056.1    CH479179    EDW24199.1    CM000070    EAL28123.2    JXJN01007738    GBXI01010269    JAD04023.1    CH477694    EAT37177.1    KQ435050    KZC14236.1    CH902617    EDV43817.1    GBYB01000095    JAG69862.1    OUUW01000005    SPP81052.1    GDHF01031029    JAI21285.1    AXCN02001212    CH480819    EDW53411.1    SPP81051.1    GAKP01008606    JAC50346.1    CH954182    EDV53177.1    AE014297    AHN57591.1    X52814    M33932    AY058596    X57475    GAMC01003536    GAMC01003534    JAC03022.1    CCAG010013281    KQ414663    KOC65509.1    AXCM01000279    KQ414716    KOC62824.1    KZ288215    PBC32683.1    CH940650    EDW67342.1    CH964232    EDW81188.1    CH916373    EDV94386.1    NNAY01001399    OXU24109.1    KQ981965    KYN31814.1    KQ982558    KYQ54991.1    CVRI01000036    CRK93080.1    CH933806    EDW16770.1    KQ979608    KYN20496.1    AJVK01007914    KQ976717    KYM76772.1    ADTU01023780    GL888243    EGI64093.1    GL452770    EFN76819.1    KQ976946    KYN06934.1    ADMH02002125    ETN58653.1    KK107078    EZA60402.1    QOIP01000011    RLU16712.1    AJWK01022514    JXJN01023088    GL439967    EFN66508.1    CCAG010009526    FJ219211    ACI96507.1    FJ219185    ACI96481.1    KQ435776    KOX74885.1    FJ219195    FJ219197    ACI96491.1    ACI96493.1    FJ219180    ACI96476.1    FJ219191    ACI96487.1    FJ219208    ACI96504.1    FJ219203    ACI96499.1    FJ219188    FJ219196    FJ219198    FJ219210    ACI96484.1    ACI96492.1    ACI96494.1    ACI96506.1    FJ219192    ACI96488.1   
Pfam
PF00225   Kinesin        + More
PF16796   Microtub_bd
Interpro
IPR027417   P-loop_NTPase        + More
IPR001752   Kinesin_motor_dom       
IPR027640   Kinesin-like_fam       
IPR036961   Kinesin_motor_dom_sf       
IPR019821   Kinesin_motor_CS       
IPR027325   KIFC3-like       
IPR031852   Vik1/Cik1_MT-bd       
SUPFAM
SSF52540   SSF52540       
Gene 3D
PDB
5W3D     E-value=2.3072e-97,     Score=910

Ontologies

Topology

Subcellular location
  
Length:
620
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00146
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00034
outside
1  -  620
 
 

Population Genetic Test Statistics

Pi
238.292777
Theta
187.642499
Tajima's D
0.743569
CLR
0.165879
CSRT
0.584470776461177
Interpretation
Uncertain
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