SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05641
Pre Gene Modal
BGIBMGA006786
Annotation
PREDICTED:_rotatin-like_isoform_X2_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.271
 

Sequence

CDS
ATGGCCGAGGAGTTGTGTAAAATACTTGTAAACCTGTATCGGAAAATTTTGCTGGACAATAAAAAGCATTTGGCTAGTCAAAACGAACAATGGGTGAATATATCGTCATGCCTATCATCAGTGCTAGCCGTCAGTCCGCGAAGCCGTGAATTCGGCGTGCACCGCCACCTGCCGAAGGTGTTACTCGAAATGTTGCAGGCGGCGCGCGACCATCTCTCGGTACAAGGGAAGCCGGCTGATGTCATCCGCAATGCTAATAACAATCCCGTTCTATGCACGTTGTACTGGGTGCTCACCAGCGTCGATTGTTTGATGGTAAATTGTCCTGCTGCCAAGATAAGTTTCGCGGAGGATAACATAGCGCTGTCGCTCAACAAGCTCTGGCCCTGGTGTATGATGACTGACCAACTACGCCAGGCAGTCATGCATTTGCTTTACACGTTTACGAACGATTGTGAAAAAGCCTATTCATCGATGTGCACGTGCGTGAGCGGCCGCAACCTGACGAGCGAGGTGTGTGCGCTGGCGGCCCGCGAGGCGGCGCTGCAGTCGCGCACTAGGGCCGACTCGCTGCTGCTACTCGCTTTAAATACGTTGAGGAATTGCCTACACCATCACCACTGCCGAACTATCATTATAAAGAGCGACGTGTTGAGTTCGGTGTACAGAATGTGCGTCCGAGAGCGCGTCCGCGGCGCGTGCGGGGCGGCGGACGCGTGGGCCGGGTTCGTGGAGACGCTGTCTCGGCACGCGGACGGCGCGGCGGCCGTGCTCGGGGCGCTGGCGCCGCGCGCCGCCATGTGCGCGCTGCCGCCGCCGCTGCGAGCTAAGCTCATGCCCGCTCTAGCTCACGGGGCGCATTATCATCGCGTTGCTTTTCTGCAGTCCTATGTGCGGATGGCGGACGTCGTTGAGCTCGTCTGA
Protein
MAEELCKILVNLYRKILLDNKKHLASQNEQWVNISSCLSSVLAVSPRSREFGVHRHLPKVLLEMLQAARDHLSVQGKPADVIRNANNNPVLCTLYWVLTSVDCLMVNCPAAKISFAEDNIALSLNKLWPWCMMTDQLRQAVMHLLYTFTNDCEKAYSSMCTCVSGRNLTSEVCALAAREAALQSRTRADSLLLLALNTLRNCLHHHHCRTIIIKSDVLSSVYRMCVRERVRGACGAADAWAGFVETLSRHADGAAAVLGALAPRAAMCALPPPLRAKLMPALAHGAHYHRVAFLQSYVRMADVVELV

Summary

Pfam
PF00067   p450        + More
PF14726   RTTN_N
Interpro
IPR016024   ARM-type_fold        + More
IPR030791   Rotatin       
IPR011989   ARM-like       
IPR002401   Cyt_P450_E_grp-I       
IPR001128   Cyt_P450       
IPR017972   Cyt_P450_CS       
IPR036396   Cyt_P450_sf       
IPR029249   Rotatin_N       
SUPFAM
SSF48371   SSF48371        + More
SSF48264   SSF48264       
Gene 3D

Ontologies

Topology

Length:
307
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02895
Exp number, first 60 AAs:
0.00146
Total prob of N-in:
0.01307
outside
1  -  307
 
 

Population Genetic Test Statistics

Pi
185.255565
Theta
166.166544
Tajima's D
0.62002
CLR
0.020956
CSRT
0.549172541372931
Interpretation
Uncertain
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