SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05638
Pre Gene Modal
BGIBMGA006784
Annotation
PREDICTED:_rotatin-like_isoform_X2_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.005
 

Sequence

CDS
ATGGATAACTTACCCAATGAAGGCGCCACACTGTTCTGGATCAAACAGGCCTTCATCGGAAACGATGCTTCCATAATAACGCTTTTGAGTCGAGAACAGTTTTATCCGCAACAAACGACACAGGAATGTATAGAAGTGACTCAGCTGCACATACACATCGTTAAAGTGCTTCTCAGGTGTGTTATATTGTTAGAGCGTGACGAATATAGTACAAATAAACTGGAGAGCCTCTTGAAGATATTACTCGCGTGCTTGGAAAGGACTGAATTGAAAAATTTTCATATGTTAGGATACCTCAACGAACTGACGCGTTGTGTTCGACACGCCCTGAACTCCCGATACTGCAAGCTGTCACAGGAAACGCTCATCGAATGTATGAAGTTGCTCACGAAAACATTGAACGGCTGCGCGTCCGGGGCTGGCTGCAAGGGCCAGGCGTGTAGACTGGATATAATGCTGTCAATATTGGCTTTGTTAAGGGAAATATTCGAAGAAGCCATACCCGTTCAGAGATGGAGTGAAGCGTGGAGCAGCGATGCGGTGAGAGAAGTATTTGTGTGCGGTAACAGTAGGCGAGTGGAACTACGGGCGGCCGCCATACACGTTGTAGCCTCACTTGCACATTACGCGCAGTTCTTACCACATTTGTTGCAAGGTCAAGGTTAA
Protein
MDNLPNEGATLFWIKQAFIGNDASIITLLSREQFYPQQTTQECIEVTQLHIHIVKVLLRCVILLERDEYSTNKLESLLKILLACLERTELKNFHMLGYLNELTRCVRHALNSRYCKLSQETLIECMKLLTKTLNGCASGAGCKGQACRLDIMLSILALLREIFEEAIPVQRWSEAWSSDAVREVFVCGNSRRVELRAAAIHVVASLAHYAQFLPHLLQGQG

Summary

Pfam
PF01400   Astacin        + More
PF14726   RTTN_N
PF00067   p450
Interpro
IPR030791   Rotatin        + More
IPR001506   Peptidase_M12A       
IPR029249   Rotatin_N       
IPR024079   MetalloPept_cat_dom_sf       
IPR016024   ARM-type_fold       
IPR002401   Cyt_P450_E_grp-I       
IPR001128   Cyt_P450       
IPR017972   Cyt_P450_CS       
IPR036396   Cyt_P450_sf       
SUPFAM
SSF48371   SSF48371        + More
SSF48264   SSF48264       
Gene 3D

Ontologies

Topology

Length:
221
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.38805
Exp number, first 60 AAs:
0.12003
Total prob of N-in:
0.05354
outside
1  -  221
 
 

Population Genetic Test Statistics

Pi
196.931919
Theta
154.819781
Tajima's D
0.893547
CLR
0
CSRT
0.624568771561422
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号