Gene

KWMTBOMO05637

Pre Gene Modal

BGIBMGA006784

Annotation

PREDICTED:_rotatin-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(+):7007503-7019605      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.026

CDS

ATGAGTAAACCTGAGATTATAATTAATTACATTCAGAAGCTTAGACATCCAATAAAAGAGATTCGTGAACGCTCTCTTCAATCATTAAAATCCAAATTCAAGTTGGGATGGGAGTTCGATGATGAGATTTCGGGAACCAGGTTTCTATTGGAATCCTTAATGGAATGGTTCAATGACGAGAAACCGCTTCTACAGCGAGAAGCTTTAGATTTGCTACACTCAGTAATAAAGACAAAATCTGGGACATACATCGTACAAGAAACAGGCTTAAACAATTTGGTTACAAAAATACAGAAATTTAAAGATAAAATAGATAAGGATGCATTAAATATCTATGAAGACATTATGGAGAGTCTGACCTTCTTAAACACAGTGTCTTCAGAAGAAAATTTGAATATTCCAAGACTAAGTTTATCTGAAGAAATGAGAGCTGAAAGTTGTGGGAGATCAAGCAGCAGTTACTATAATTTAGCTTCAAGCACACAGAGTTCAAAAGAATCATCGGTTTTAAACATATGTTTAGATGTCAACGGGCAAAGTTCGAATTCTGATGATGGTGTAAAAGTGCTGCTATTTCCATGGGCTGATCTAAGTCAATCAGATATTAGACCCATTCTTTTAATCGAGGATGCTCTAAGGCTACTTCGTTCTACCAGACGATGTTGCAGATTTATCCGAGATGTATTTTTGCGCGATTTTCCTGCAGAAATATTCTTAAATCGTCCTCAAATTATAAAGAATCTTTGGTCAATGATTGATGGAAATAATAAAACTCATTCTGAAGAGGCACTACATGTACTATTTCACATAACGTCTGCATTGCGGTCCAGGCTCTTACAATTAAAGTCTTTTGACCTCAAATACAGCATCCAGTTTACAGGCGATGATAAAATCTCGCAGAATGATGTTAATTTAGAGCTGGAACAAATTACAGGAGATGACTTTTCTGGGTCGTTAGAGGAAGATAAACTCATAGCTTTAAAGCAATTACCTGCTCCTATTTTTACTTTAGAATCCCTTCATAGTATATTTTCTACAATGAATAGGAATTTAACTTTTTTTGAACAGAATGAATTAAGTGACATTCTTGCCTGGAAAGAACTAAATACATTCTTGCAATTAATCGAGGTCCTTGTTGGATTGCTTTTCGACTGTGTTACGGAAAAATTCTGGTCTGTTGACCATACTTCGAAGACTCACAGAGATATCTCTCACAAAAGTTGTATGGTCATGCGCGTATTAGGGGACATACTTACGAAGTACAGAGAATCATTTTTCAATGACACAGCAGCGGAGCGTTATCGAGTTGCTTGGTTACGTTTGATATTTTGTGGGGAAAGATTTCTTAATTGGGCGAGAAACTCAGCTTTACCACCCTCATCTCTGGTATCCGCCGTACAAGCTGCGCAACTAGATCCAGCGGTGGACTTATTTTACCCTGAATTGAGTAATAGAATATCAATTGTTTTGCAGAATGTGAATCTGTCTGTAGACCAAGAATACAAAAGTAAATACCGAGAGTTGAAAATGCTATTCTCCAGCATGGAGCACGCTGTAAACTTTATGAAGAATAAGAATTCGTGTCGTAATACAACCAAAGTACTGACCGTCATAACAGATGCGCTTCCTACTTTGGAATTGATTCAAAGCGAGACTTTTCTAAATGACGTTATAAATGTGTTATTGATTAAAACTAAAGACTTTGTTATGGATGAAAACGATTGGTCCAAGGCGAGGAATATAGCTTTGAAATTGATGGCACACAATTCGGAGTGGGTTCGTGCCAAATTCTATGAGAGAATGGCGGATATGGTGAAATCAATTTTAGTCGATGAAACCAACCAATCGGTTAATGAAAAAAGTTTGACTTTGATATGTGATGTGGGAGTTTTGACTGAGATATGCTGTCACGGTCTTTCTTCTAAATCAAAGGAGGTAGAGGAACATGCTACGGATGTTATGCTGTATCTGCTGCGAGGGCGGCTGGTGCTCAGTGACGGTTGCTGGTGGCGTCTGATGGCCAGCTTGTTGCCCGTCCTACCGCTGCTACACGTATACGCTGCACACGAAACACATCTTGGACGAGCGATTTGCAAGTCACTGGAACGCGACATCGCCAATTGCATGGGCGTGTCGAACGCGGACTTGATATCGGGCTTGGTGCGGCTTTTATTCGTGCGGTGCGCTACGGTACAGTTAGACGCCGCCCACTCCTTATGTCGTTTACTAGACGACGAAAGATACTTACCTCCGCAGCAATCTCTAAGAGTTGATGTTTTACTAAGCGCATTAAGAAGAGTGAAAACTCAAGAGTTCAATTTGGATACTTCTAGTTCACCCACAAAGATGATACAGACGACCGCCCTATTACAAATGTTGGACGTTTTAAAACAAGGCATCGTGCTGGACGAGCGCGGCGCCGAGCTCGTGGCGCGCCCCCCGCTGCGGCCCGCGCTCGAGCCGTCGCTGCGCCGCACCACCCTGCAGCAGCTCGCGCTCGTCATGCGGCAACAACAACTGCACGAAACATTCATGGAGTACGACGGCCTTCGAGTTGTCGTGGCTACGTTGAGGATGTCCTTACTGGTGGATGACTATCTTGCGTTTCCGGAGTGCGCGGTCAGCTGCGTGTCGGTGCTAAACAGTGTGTGCTTCACGGCTCGTCACGCCTTGGCCAAGATACCTGACCTATTTTTGCTATTGTTGAGAGTGATATTGGTGTTTCCAACAAATGAAGCTGCAGTGGCTATGACCGCACAAGTGCTGGCTCTAGTGGCGTGGGCCGGATTTGTATTACAAGAGCTAGATTCTGCTCGACGTCGCGTACCAGCTCTGCCATTAAACGTGACGGACCGGATATCTCTGCCTTTTAACGTCCACAGCTATTGGAGCACTAGCCCTAATGCTGAACATTCATACATTGAGTGGTTGTTAGGGGAGGAACAGTGGCGTGCATGTATCCGCGTGCGCTGGTGGTGCACGTACGCGGGGCGCGCGTGCGTGCTGCAGGGGCCGAGCGCCGCCGCCGCGTGCCCCGCCCCGCTGGGCCTGCAGCCCGCCGCGCGCGACGTGGCCGCGCTGAGGACGGCGTGCCCGCAGTACGCGTGCGGCGCCGCCCTGCTCGCGCTCGAGAACGCGACCTCGCATGCCCAGTGA

Protein

MSKPEIIINYIQKLRHPIKEIRERSLQSLKSKFKLGWEFDDEISGTRFLLESLMEWFNDEKPLLQREALDLLHSVIKTKSGTYIVQETGLNNLVTKIQKFKDKIDKDALNIYEDIMESLTFLNTVSSEENLNIPRLSLSEEMRAESCGRSSSSYYNLASSTQSSKESSVLNICLDVNGQSSNSDDGVKVLLFPWADLSQSDIRPILLIEDALRLLRSTRRCCRFIRDVFLRDFPAEIFLNRPQIIKNLWSMIDGNNKTHSEEALHVLFHITSALRSRLLQLKSFDLKYSIQFTGDDKISQNDVNLELEQITGDDFSGSLEEDKLIALKQLPAPIFTLESLHSIFSTMNRNLTFFEQNELSDILAWKELNTFLQLIEVLVGLLFDCVTEKFWSVDHTSKTHRDISHKSCMVMRVLGDILTKYRESFFNDTAAERYRVAWLRLIFCGERFLNWARNSALPPSSLVSAVQAAQLDPAVDLFYPELSNRISIVLQNVNLSVDQEYKSKYRELKMLFSSMEHAVNFMKNKNSCRNTTKVLTVITDALPTLELIQSETFLNDVINVLLIKTKDFVMDENDWSKARNIALKLMAHNSEWVRAKFYERMADMVKSILVDETNQSVNEKSLTLICDVGVLTEICCHGLSSKSKEVEEHATDVMLYLLRGRLVLSDGCWWRLMASLLPVLPLLHVYAAHETHLGRAICKSLERDIANCMGVSNADLISGLVRLLFVRCATVQLDAAHSLCRLLDDERYLPPQQSLRVDVLLSALRRVKTQEFNLDTSSSPTKMIQTTALLQMLDVLKQGIVLDERGAELVARPPLRPALEPSLRRTTLQQLALVMRQQQLHETFMEYDGLRVVVATLRMSLLVDDYLAFPECAVSCVSVLNSVCFTARHALAKIPDLFLLLLRVILVFPTNEAAVAMTAQVLALVAWAGFVLQELDSARRRVPALPLNVTDRISLPFNVHSYWSTSPNAEHSYIEWLLGEEQWRACIRVRWWCTYAGRACVLQGPSAAAACPAPLGLQPAARDVAALRTACPQYACGAALLALENATSHAQ

Uniprot

H9JB89   A0A2A4J928   A0A212EUN4   A0A194QMF9   A0A194PE57   A0A139WBK6   + More
A0A195EP54   A0A158NEG1   A0A195BV69   A0A154PRC5   A0A195FKC7   A0A151XJ89   F4WVJ4   A0A310SXI6   E9ID30   A0A0L7QLD8   E2B9K2   K7IRQ8   A0A232FD48   E0VIU0   A0A087ZR13   A0A0C9RCN8   A0A2A3E951   A0A0M9A9J8   A0A1Y1NBB4   A0A195CQA9   V4AU31   W5M728   A0A3L8E4K6   I3KA67   F7CVJ3   G3WGH6   A0A2U9CXV1   A0A3Q1GHK3   A0A1W5BJ36   A0A0L8G8T4   G3WGH8   C4TFE0   A0A3P9D2Y4   C4TFD9   A0A3Q1B8S3   H2LUM2   C4TFD6   C4TFE2   C4TFE1   E6ZIL3   C4TFD8   C4TFD7   G3WGH7   A0A3Q4G585   A0A3Q2X1X5   A0A3B5B6K1   A0A3Q3FFD4  

Pubmed

19121390    22118469    26354079    18362917    19820115    21347285    + More
21719571    21282665    20798317    20075255    28648823    20566863    28004739    23254933    30249741    25186727    17495919    21709235    17554307   

EMBL

BABH01008785    NWSH01002591    PCG67903.1    AGBW02012332    OWR45199.1    KQ461198    + More
KPJ06140.1    KQ459606    KPI91547.1    KQ971372    KYB25348.1    KQ978625    KYN29664.1    ADTU01013285    KQ976401    KYM92477.1    KQ435057    KZC14297.1    KQ981490    KYN41120.1    KQ982080    KYQ60397.1    GL888387    EGI61815.1    KQ759804    OAD62796.1    GL762454    EFZ21315.1    KQ414924    KOC59425.1    GL446556    EFN87635.1    NNAY01000408    OXU28605.1    DS235206    EEB13296.1    GBYB01014329    JAG84096.1    KZ288344    PBC27719.1    KQ435709    KOX79990.1    GEZM01007669    JAV95009.1    KQ977444    KYN02662.1    KB201262    ESO98430.1    AHAT01004312    AHAT01004313    AHAT01004314    AHAT01004315    AHAT01004316    AHAT01004317    AHAT01004318    QOIP01000001    RLU27556.1    AERX01010073    AERX01010074    AEFK01062067    AEFK01062068    AEFK01062069    AEFK01062070    AEFK01062071    AEFK01062072    AEFK01062073    AEFK01062074    AEFK01062075    AEFK01062076    CP026263    AWP20729.1    KQ423217    KOF73283.1    AB435849    BAH66370.1    AB435848    BAH66369.1    AB435845    BAH66366.1    AB435851    BAH66372.1    AB435850    BAH66371.1    FQ310508    CBN81897.1    AB435847    BAH66368.1    AB435846    BAH66367.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000007266    + More
UP000078492    UP000005205    UP000078540    UP000076502    UP000078541    UP000075809    UP000007755    UP000053825    UP000008237    UP000002358    UP000215335    UP000009046    UP000005203    UP000242457    UP000053105    UP000078542    UP000030746    UP000018468    UP000279307    UP000005207    UP000002280    UP000007648    UP000246464    UP000257200    UP000053454    UP000265160    UP000257160    UP000001038    UP000261580    UP000264840    UP000261400    UP000261660   

PRIDE

H9JB89   

Pfam

PF01400   Astacin        + More
PF14726   RTTN_N
PF00067   p450
PF02949   7tm_6
PF07686   V-set

Interpro

IPR030791   Rotatin        + More
IPR001506   Peptidase_M12A       
IPR029249   Rotatin_N       
IPR024079   MetalloPept_cat_dom_sf       
IPR016024   ARM-type_fold       
IPR002401   Cyt_P450_E_grp-I       
IPR001128   Cyt_P450       
IPR017972   Cyt_P450_CS       
IPR036396   Cyt_P450_sf       
IPR004117   7tm6_olfct_rcpt       
IPR011989   ARM-like       
IPR018188   RNase_T2_His_AS_1       
IPR036179   Ig-like_dom_sf       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR013106   Ig_V-set       

SUPFAM

SSF48371   SSF48371        + More
SSF48264   SSF48264       
SSF48726   SSF48726       

Gene 3D

3.40.390.10     1.10.630.10     1.25.10.10     2.60.40.10    

ProteinModelPortal

H9JB89   A0A2A4J928   A0A212EUN4   A0A194QMF9   A0A194PE57   A0A139WBK6   + More
A0A195EP54   A0A158NEG1   A0A195BV69   A0A154PRC5   A0A195FKC7   A0A151XJ89   F4WVJ4   A0A310SXI6   E9ID30   A0A0L7QLD8   E2B9K2   K7IRQ8   A0A232FD48   E0VIU0   A0A087ZR13   A0A0C9RCN8   A0A2A3E951   A0A0M9A9J8   A0A1Y1NBB4   A0A195CQA9   V4AU31   W5M728   A0A3L8E4K6   I3KA67   F7CVJ3   G3WGH6   A0A2U9CXV1   A0A3Q1GHK3   A0A1W5BJ36   A0A0L8G8T4   G3WGH8   C4TFE0   A0A3P9D2Y4   C4TFD9   A0A3Q1B8S3   H2LUM2   C4TFD6   C4TFE2   C4TFE1   E6ZIL3   C4TFD8   C4TFD7   G3WGH7   A0A3Q4G585   A0A3Q2X1X5   A0A3B5B6K1   A0A3Q3FFD4  

KEGG

101742116    K16484 rotatin | (RefSeq) rotatin-like

GO

GO:0005813   GO:0036064   GO:0044782   GO:0004222   GO:0005506   GO:0016705   GO:0020037   GO:0016021   GO:0005814   GO:0010457   GO:0032053   GO:0004984   GO:0005549   GO:0007099   GO:0033897   GO:0003723   GO:0007368   GO:0005488   GO:0008176   GO:0006468   GO:0005886   GO:0006171   GO:0035076   GO:0043401   GO:0008270   GO:0003700   GO:0043565  

PANTHER

PTHR31691  

Length:

1051

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

8.15260999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1  -  1051

 

 

Pi

234.717384

Theta

179.619297

Tajima's D

0.986124

CLR

0.004367

CSRT

0.656667166641668

Interpretation

Uncertain