Gene

KWMTBOMO05624

Pre Gene Modal

BGIBMGA006560

Annotation

PREDICTED:_intraflagellar_transport_protein_20_homolog_[Amyelois_transitella]

Location

Bomo_Chr10(-):6599751-6601758      View in EpiBrowser

Full name

Intraflagellar transport protein 20 homolog B       + More
Intraflagellar transport protein 20 homolog      
Intraflagellar transport protein 20 homolog A      

Location in the cell

Cytoplasmic   Reliability : 2.48

CDS

ATGGCAGAAGAATTGCAAAAAGTTCACCTATTTTACGATGACATCAATAAAATAAAGGTTCTTGAGGAGAATGTTTTGAAAGATACTGAAGATTTAAGGGACACCTGTAAGGAGTACGAAAATAAGGTGCAAAATTTTGAAAAAATTATAAGCTCGCTGTTAGATCTAATTAAAGATCTCGGCGACAATGTTGAAAATAAGAAAATGGCTGCAATAGGAGCAATGAACTTATTAAAATCAATAGCCAAAGATAAGGAATCCGAACAGCTGAAATTGCAAGCGGAAATTAACGACAAGACTTCATTATTGGAACAAATAGACAGCGAATACGATACACTTCAAATCCTTGAAGCAACTCAGATGGAAACAATTGAATATCTTACACAATTACGTTAA

Protein

MAEELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEKIISSLLDLIKDLGDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDKTSLLEQIDSEYDTLQILEATQMETIEYLTQLR

Description

Involved in ciliary process assembly. May play a role in the trafficking of ciliary membrane proteins from the Golgi complex to the cilium. Regulates the platelet-derived growth factor receptor-alpha (PDGFRA) signaling pathway. Plays an important role in spermatogenesis, particularly spermiogenesis, when germ cells form flagella.

Keywords

Cell projection   Coiled coil   Cytoplasm   Cytoskeleton   Differentiation   Golgi apparatus   Spermatogenesis   Complete proteome   Reference proteome   Alternative splicing  

Feature

chain  Intraflagellar transport protein 20 homolog B
splice variant  In isoform 2.

Uniprot

H9JAL5   A0A2H1WK60   A0A2A4JY25   A0A194PEX1   A0A194QKV4   A0A212FNP4   + More
A0A1E1VX70   A0A067RA83   A0A2P8ZAJ5   A0A1A9VT60   A0A3R7M4L2   W8AU62   A0A2J7QTU8   A0A0L0CN93   T1J9Z6   A0A1B0FJY4   A0A1A9YJG4   A0A3L8E6S9   A0A232F1W5   K7IRQ5   A0A034W2G6   A0A1A9X4D9   A0A1A9ZUU9   E1ZZA2   A0A0E9X169   A0A0A9ZEV1   A0A1I8MBE6   A0A154P780   A0A1I8Q0R2   F6VTY2   H2ZKX7   A0A1B0DK19   A0A1B0D5N6   A0A158NEG6   E2B9K6   A0A2B4SQL4   A0A2P4TAN7   A0A195FMD3   A7SER9   A0A0P4WEJ1   F4WVJ0   A0A1B0CJ22   A0A0B6XXD7   A0A2T7PDD8   A0A1L1RUE2   D6X253   A0A195CQA4   A0A1L8H621   Q640Z7   A0A3S2U7R0   M3W9I1   A0A091DS13   A0A151XJ19   B2GRJ4   Q66I67   A0A0L8H5N8   B7ZQ18   Q90WZ0   A0A3B3CFH2   A0A1Q3G4W9   G1Q3Z8   A0A218UN02   A0A3M0KBX9   R7UJ95   Q17L50   B5G0K2   H0ZEF7   A0A0Q3MC78   T1FXJ2   A0A3L8RWU6   A0A369SC42   B3RYV5   A0A151N5V4   A0A1U7RDN6   Q66KL7   A0A2G8KDX5   A0A0M9A9J3   A0A182P7P5   A0A182GBC9   A0A182S8A3   G1K3J3   B4LPG4   T2MA27   A0A084WL24   B4J6H0   A0A182J375   A0A310S7H5   A0A182YKV3   V4AKN8   A0A182VG92   A0A182K4I9   A0A182TZZ3   A0A182KNW3   A0A182X5E2   A7UU37   A0A182I1A5   A0A182RDU3   A0A2A3E3J3   A0A182NK14   A0A3Q0SII1  

Pubmed

19121390    26354079    22118469    24845553    29403074    24495485    + More
26108605    30249741    28648823    20075255    25348373    20798317    25613341    25401762    26823975    25315136    12481130    15114417    21347285    17615350    21719571    15592404    18362917    19820115    27762356    17975172    15182712    11916979    29451363    21993624    23254933    17510324    17018643    20360741    30282656    30042472    18719581    22293439    29023486    26483478    20431018    17994087    24065732    24438588    18057021    25244985    20966253    12364791    14747013    17210077   

EMBL

BABH01008750    ODYU01009143    SOQ53356.1    NWSH01000455    PCG76292.1    KQ459606    + More
KPI91568.1    KQ461198    KPJ06162.1    AGBW02005235    OWR55329.1    GDQN01011744    JAT79310.1    KK852824    KDR15474.1    PYGN01000124    PSN53501.1    QCYY01002259    ROT71714.1    GAMC01016796    GAMC01016793    JAB89762.1    NEVH01011193    PNF31993.1    JRES01000156    KNC33756.1    JH431980    CCAG010004088    QOIP01000001    RLU27649.1    NNAY01001298    OXU24438.1    GAKP01010657    GAKP01010654    JAC48295.1    GL435311    EFN73517.1    GBXM01012932    JAH95645.1    GBHO01001158    GBHO01001155    GBRD01017968    GBRD01017967    GDHC01021191    GDHC01020233    JAG42446.1    JAG42449.1    JAG47859.1    JAP97437.1    JAP98395.1    KQ434822    KZC07194.1    AJVK01035201    AJVK01011849    ADTU01013294    GL446556    EFN87639.1    LSMT01000017    PFX32964.1    PPHD01003592    POI33426.1    KQ981490    KYN41124.1    DS469639    EDO37752.1    GDRN01056844    JAI65774.1    GL888387    EGI61811.1    AJWK01013975    HACG01001704    CEK48569.1    PZQS01000004    PVD31430.1    AADN05000057    KQ971371    EFA09915.1    KQ977444    KYN02657.1    CM004469    OCT91540.1    BC082442    CM012449    RVE64708.1    AANG04004035    KN123351    KFO25586.1    KQ982080    KYQ60394.1    BC165149    AAI65149.1    AY600453    BC081508    KQ419279    KOF84085.1    BC169649    BC169651    CM004468    AAI69649.1    AAI69651.1    OCT94243.1    AY048114    BC087360    GFDL01000197    JAV34848.1    AAPE02023599    MUZQ01000227    OWK54752.1    QRBI01000111    RMC10585.1    AMQN01008324    AMQN01008325    KB302824    ELU03863.1    CH477218    EAT47445.1    DQ215067    DQ215068    DQ215069    DQ215070    ACH44813.1    ABQF01026756    LMAW01002540    KQK80263.1    AMQM01000389    KB095811    ESO13209.1    QUSF01000148    RLV89383.1    NOWV01000027    RDD44359.1    DS985246    EDV23735.1    AKHW03004004    KYO32141.1    CR762302    BC080338    MRZV01000660    PIK46183.1    KQ435709    KOX79997.1    JXUM01052654    KQ561744    KXJ77653.1    AAMC01044400    CH940648    EDW61223.1    HAAD01002684    CDG68916.1    ATLV01024174    KE525350    KFB50918.1    CH916367    CH917341    EDW01971.1    EDW05136.1    KQ777667    OAD52059.1    KB201656    ESO95305.1    AAAB01008960    EDO63815.1    APCN01000048    KZ288442    PBC25709.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000027135    + More
UP000245037    UP000078200    UP000283509    UP000235965    UP000037069    UP000092444    UP000092443    UP000279307    UP000215335    UP000002358    UP000091820    UP000092445    UP000000311    UP000095301    UP000076502    UP000095300    UP000008144    UP000007875    UP000092462    UP000005205    UP000008237    UP000225706    UP000078541    UP000001593    UP000007755    UP000092461    UP000245119    UP000000539    UP000007266    UP000078542    UP000186698    UP000011712    UP000028990    UP000075809    UP000000437    UP000053454    UP000261560    UP000001074    UP000197619    UP000269221    UP000014760    UP000008820    UP000007754    UP000051836    UP000015101    UP000276834    UP000253843    UP000009022    UP000050525    UP000189705    UP000008143    UP000230750    UP000053105    UP000075885    UP000069940    UP000249989    UP000075901    UP000008792    UP000030765    UP000001070    UP000075880    UP000076408    UP000030746    UP000075903    UP000075881    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000075900    UP000242457    UP000075884    UP000261340   

PRIDE

H9JAL5    A0A1L1RUE2   

Pfam

PF14931   IFT20

Interpro

IPR028172   FT20       

ProteinModelPortal

H9JAL5   A0A2H1WK60   A0A2A4JY25   A0A194PEX1   A0A194QKV4   A0A212FNP4   + More
A0A1E1VX70   A0A067RA83   A0A2P8ZAJ5   A0A1A9VT60   A0A3R7M4L2   W8AU62   A0A2J7QTU8   A0A0L0CN93   T1J9Z6   A0A1B0FJY4   A0A1A9YJG4   A0A3L8E6S9   A0A232F1W5   K7IRQ5   A0A034W2G6   A0A1A9X4D9   A0A1A9ZUU9   E1ZZA2   A0A0E9X169   A0A0A9ZEV1   A0A1I8MBE6   A0A154P780   A0A1I8Q0R2   F6VTY2   H2ZKX7   A0A1B0DK19   A0A1B0D5N6   A0A158NEG6   E2B9K6   A0A2B4SQL4   A0A2P4TAN7   A0A195FMD3   A7SER9   A0A0P4WEJ1   F4WVJ0   A0A1B0CJ22   A0A0B6XXD7   A0A2T7PDD8   A0A1L1RUE2   D6X253   A0A195CQA4   A0A1L8H621   Q640Z7   A0A3S2U7R0   M3W9I1   A0A091DS13   A0A151XJ19   B2GRJ4   Q66I67   A0A0L8H5N8   B7ZQ18   Q90WZ0   A0A3B3CFH2   A0A1Q3G4W9   G1Q3Z8   A0A218UN02   A0A3M0KBX9   R7UJ95   Q17L50   B5G0K2   H0ZEF7   A0A0Q3MC78   T1FXJ2   A0A3L8RWU6   A0A369SC42   B3RYV5   A0A151N5V4   A0A1U7RDN6   Q66KL7   A0A2G8KDX5   A0A0M9A9J3   A0A182P7P5   A0A182GBC9   A0A182S8A3   G1K3J3   B4LPG4   T2MA27   A0A084WL24   B4J6H0   A0A182J375   A0A310S7H5   A0A182YKV3   V4AKN8   A0A182VG92   A0A182K4I9   A0A182TZZ3   A0A182KNW3   A0A182X5E2   A7UU37   A0A182I1A5   A0A182RDU3   A0A2A3E3J3   A0A182NK14   A0A3Q0SII1  

KEGG

101742115    K16473 intraflagellar transport protein 20 | (RefSeq) intraflagellar transport protein 20 homolog

GO

GO:0031514   GO:0051642   GO:0005813   GO:0042073   GO:0030992   GO:0005929   GO:0005794   GO:0061512   GO:0008542   GO:0001736   GO:0060271   GO:0055007   GO:0005801   GO:0001822   GO:0005814   GO:0097546   GO:0005902   GO:0060122   GO:0044292   GO:0036372   GO:2000583   GO:2000785   GO:0032391   GO:0001750   GO:0061351   GO:0017137   GO:1902017   GO:0060828   GO:0007224   GO:0034067   GO:0035845   GO:0090102   GO:1902636   GO:0072659   GO:0002046   GO:0032420   GO:0007283   GO:0030030   GO:0030154   GO:0005930   GO:0036064  

PANTHER

PTHR31978  

Subcellular location

Golgi apparatus  
cis-Golgi network  
Cytoplasm  
Cytoskeleton  
Microtubule organizing center  
Centrosome  
Centriole  
Cell projection  
Cilium  

Length:

131

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.13340

outside

1  -  131

 

 

Pi

197.550998

Theta

182.808895

Tajima's D

0.130398

CLR

0.43284

CSRT

0.406329683515824

Interpretation

Uncertain