SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05620
Pre Gene Modal
BGIBMGA006778
Annotation
PREDICTED:_INO80_complex_subunit_B_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.553
 

Sequence

CDS
ATGGTACGAAGACAACGAGAACAAAGCACTACAGAGGATGAAATCGTCATTGATACACCACCTTCTAAAAAACTTAAGAAGCACAGGCACAAAAAGCACAAGAGAAGAAAGCTACAAGATGAGTTTGATAGTGACACTTCCATCGATGTATCATATGAAGATAATTTGGATAAACCCTATAAAATAAAATTAAAAGGTGGGAGAGAGTTGCCTGGAACATCAGCTGCCGATCTCCTCAAAGCACAAACAATGAAATCTGTACCAGATTCAAGGCGATCTTTGCCTGGATCTTCCTCAAGTACTCCTCCTAAAGTAACTTCTAAAAAAAAGAAAAAGGGACGGGAAAGTGGAACTTCTAGCGAAGAAGAAAGATGGCTGGATGCCATAAAGTCTGGAAAACTTGAGGAGGTTGATGAGGAACTAAAGAAGATAAAACCTAAAGATCCTAAAATGATGACAGCAAGGCAAAGGGCCATGTATGAGAGGGGAACAGATAAAGAAACCAGCCCTGGAGGTGAAGTACTACTCGCCCTTCCCTCAGGTTACAAAGAGAAAGTAATGACAGCAGAAGCAATTCAGAAAGCTGCACTAAAATCACAAAAGCGCAAACAACTTGCTGATGAAAAACGTGAGAAAGACAAAAAGAAAACAATGGACAGACTTCTTAAAAAACAAGATTCTAAAAACATAAAAAATATGCATAAGGGTAAACCCATCAAAAAACAGGAGCCCATGATTGTTTATAAAAATAATATCAATGAAATTTCCTTGGCTCTGCCCATTGGTATTGAATTCCCATTGGCTGTGAAACCTCCAATAGCAGCACCAAAACCAATTATCTGTGGAGCTGATGGATGTGTTAATTTAAAAAAATATAATTGTTCTAAAACTAGCATACCTCTGTGTAGTTTAGAATGTTATAAAAAGAATTTGAAAAAATAA
Protein
MVRRQREQSTTEDEIVIDTPPSKKLKKHRHKKHKRRKLQDEFDSDTSIDVSYEDNLDKPYKIKLKGGRELPGTSAADLLKAQTMKSVPDSRRSLPGSSSSTPPKVTSKKKKKGRESGTSSEEERWLDAIKSGKLEEVDEELKKIKPKDPKMMTARQRAMYERGTDKETSPGGEVLLALPSGYKEKVMTAEAIQKAALKSQKRKQLADEKREKDKKKTMDRLLKKQDSKNIKNMHKGKPIKKQEPMIVYKNNINEISLALPIGIEFPLAVKPPIAAPKPIICGADGCVNLKKYNCSKTSIPLCSLECYKKNLKK

Summary

Pfam
PF04438   zf-HIT        + More
PF05585   DUF1758
PF04795   PAPA-1
Interpro
IPR008737   Peptidase_asp_put        + More
IPR029523   INO80B/Ies2       
IPR007529   Znf_HIT       
IPR006880   INO80B_C       
PDB
6HTS     E-value=1.27406e-11,     Score=167

Ontologies

Topology

Length:
313
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.04732
Exp number, first 60 AAs:
0
Total prob of N-in:
0.29229
outside
1  -  313
 
 

Population Genetic Test Statistics

Pi
244.040678
Theta
197.566595
Tajima's D
0.740397
CLR
0
CSRT
0.583420828958552
Interpretation
Uncertain
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