SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05609
Pre Gene Modal
BGIBMGA006770
Annotation
PREDICTED:_sterile_alpha_and_TIR_motif-containing_protein_1_isoform_X3_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.833
 

Sequence

CDS
ATGGCCTCGTACTCCACATACACGGGAAAACCAAAAATTTTCTTCCCAAAGAAGGTCCGTTCCGAAGAGTCCCTTCTTGCACAAGAAAAGATCCCGAAGAACTCTCGATGGATACCTGAGCTTACGCTCGATGGAAGCAACAGTCTGAAACACAACGGAAGCGCCAAAGACTTGGCATCGGTCATGGAGAATCTAAAGAAGGGCGGTCTGGTCTCCAGACAAAACCAGTCCTTAAATACACAAGTCACTAGTTCGACGCAACAGATGGTCTCCAGTACTACGTCGAGTAGCGCGGCCTCCAGTCAGCGTATGCAAAGTTCTTCCCAAAGACTGCAGCACATGGCAACTTCGGAAATGAAAGCCAGCTCGATGAAATCTGATCTGACTGAACTAAAAAGTTCGATTTCCGAAATGAAGAATCTAAGCAGTACAGCAGCTAAAAACTTTGGGCAAAGATTGCGAAGCTCCATGGAAAACATAGTAGATCAAGATGATATGGGCGAACGCCACCTTCCTGATATACGAGATCTTGGTGAAATAAGCGATTTGGGTAATATGAGTGATATGAGCGAACTCCAAGGGGACGGACCACTGGTGACTTTTCCCGAATCCGATACGCCACCTCCTATGAGTGAAAAACCATCTTTGCTTTCTGGAAACACAGTAGCCGTTGGATCAAGTGCTGCAAATGAATTGAAGTACAGTGCGGCACGGGTCACGTCAGCTAGTTCGACCCGGGTTGTAGCTGACGGTTACAGTGCATCAAGATCAGCCGCGAACAGTGCAAGGATGCGTCGTCTACAGCACGGCGAACTGCAGTATGCTGAAAGAAGTGCGGCTGGAGCATCACATCGACTGCTACAGGCCGAAGGACTTACTGCCGAACAAAACGCCGCGTACCTTCAAGAGCAGCGTTCCTTAAAAGCGGGTGAAATGAGTGCGCAAGAAGCTAATAATATGTCCGCTTCGAGTTCGAGACTGCAAACCGAAGCTTTCAGTGCCGAGAAAAAAGCTATGGCTTCAGCGCAAGCACGACAAACTGTCACATCCAGTGGGATGTTCTCTCACAAGGAACACTCCACTATGGCACAATCGAATATGACAATCTCGAGCAAGAACCTCACAACCAAATCAACGCTTCTCTCCTCACAGATGAGTCAATTACTAAATGGGACCATCAAACCCGGCGACGAAGATCTCACAAATTTAACTTTCGAGGATTTAAACAATCTAAACGCCAATTCAAATCAAAAGGATGTAGATATGGCCATACAGAAATATTCATCGCGAATGAACGCTTTCATTACATCCATAAAAAACAAACAAATGGATATGAAAAATGCATCTATACATTTCAGTAAACTGAATGAAATGTTGAGGAGAGCTTGGGCGGTACCTACATATGGACACGAACTTGGCTATTCACTTTGCAATACATTGCGGACTTCGGGTGGCTTAGACATTCTGATGGCGAATTGTTTGGAGTCTAACAATCCGGAACTGCAGTTCTCATCTGCCAAATTACTTGAGCAATGTCTCACGACAGAAAACAGGGCGCACGTCGTAGAGAATGGTCTCGAAAAGGTCGTAAACGTCGCATGTGTTTGTACGAAGAATGCGAATTCCGTGGACCACTCTCGAGTTGGTACAGGCATTTTGGAGCACCTGTTCAAGCACAGCGAGAGCACCTGCGATGACGTCATCAAATTAGGAGGTCTGGATGCGGTGCTGTTCGAATGCAGAAAAAACGACGTGGAAACTTTGAGACACTGCGCGACGGCTCTAGCGAACTTATCTCTATACGGTGGCGCGGAAAACCAAGAAGCTATGATCAAGAGAAAAGTACCGATGTGGCTGTTTCCTTTGGCTTTTCATAACGACGACAACATTAAATATTACGCGTGCTTAGCTATAGCGGTCCTAGTCGCTAACAAAGAAATCGAAGCCGCAGTATTGAAATCTGGGACATTAGATTTGGTCGAACCGTTCGTTACGTCACACAATCCTTCCGAATTCGCGAGATCGAATCTCGCTCACGCGCACGGTCAAAGCAAAAATTGGCTGAAAAGATTAGTTCCAGTGTTGAGTTCGAAGAGGGAAGAAGCTAGGAATCTGGCGGCGTTCCACTTCTGCATGGAAGCCGGGATCAAGAAGCAACAGGGGAACACGGAGATCTTTAGAGAAATAGGTGCCATAGAATCGCTCAAGAAAGTTGCCAGTTGCCCAAACGCGGTGGCCTCTAAATACGCCGCGCAGGCTCTTCGACTTATCGGGGAGGAAGTTCCACACAAGTTATCACAGCAGGTTCCCCTCTGGTCAATCGAAGACGTAAGAGAATGGGTCAAACAAATAGGGTTTTCGGAATACGCTACAAACTTTTACGAAAGCAGAGTCGACGGTGATTTACTGTTGCAAATCACGGAAGAGAATTTAAAAGAAGACATAGGCTTACAAAATGGGATCAAAAGAAAAAGATTTACCCGCGAACTCCAACAATTAAAGAAAATGGCCGATTACACGTCTCGCGACACAGGGAGTCTGAATGAGTTTTTACAAAGCATTGGTCCGGAATACACTATATACACGTACTCTATGCTCAACGCTGGCGTAGATAAAGAATCTATTCGAGGCCTGAGCGACGAGCAATTGGAAAGCGAATGTCGCATTGGCAACAGCATTCACAGACTAAGGATATTGAATGCCATCAAAGCTTACGAAAACAGTTTACCCAGTAAAGGCGAAGAGAACATGGAGAAGAATTTGGACGTCTTCGTCAGCTATAGAAGGTCAAATGGATCGCAGCTGGCTAGCTTGCTCAAAGTGCACTTACAGTTGAGAGGTTTCACGGTGTTCATCGATGTGGAGAGGCTAGAAGCAGGCAAATTTGACAATAATTTGCTGCAGAGTATCAGACAAGCTAAACACTTCTTGCTTGTTCTCACACCGAACGCCTTGGACAGGTGTAAGAGTGATCATGACAGAAAAGACTGGGTCCATCGGGAAATTGTAGCAGCGTTACAATCGCAGTGTAACATTGTGCCAATTATCGACAACTTCGAATGGCCTAAAGCTGAGGAGTTGCCTGAAGATATGAGAGCCGTGTGCCATTTCAACGGAGTCCGGTGGATTCACGACTACCAAGACGCTTGCGTCGAAAAACTTGAAAGTTTCCTACGTGGAAAGTCTAATCTCGCCAATCGCCTAGAGGGACAGCTCAGAGGTCGCGGGGACGTCCAAACCCCCGGGACCGCTACGATAGGTCGCGGTCCGCCGAACTATCAACGAATGGCGTCTTGCGAGAGCCGCGGTAGTGATAAAGCAGATTGA
Protein
MASYSTYTGKPKIFFPKKVRSEESLLAQEKIPKNSRWIPELTLDGSNSLKHNGSAKDLASVMENLKKGGLVSRQNQSLNTQVTSSTQQMVSSTTSSSAASSQRMQSSSQRLQHMATSEMKASSMKSDLTELKSSISEMKNLSSTAAKNFGQRLRSSMENIVDQDDMGERHLPDIRDLGEISDLGNMSDMSELQGDGPLVTFPESDTPPPMSEKPSLLSGNTVAVGSSAANELKYSAARVTSASSTRVVADGYSASRSAANSARMRRLQHGELQYAERSAAGASHRLLQAEGLTAEQNAAYLQEQRSLKAGEMSAQEANNMSASSSRLQTEAFSAEKKAMASAQARQTVTSSGMFSHKEHSTMAQSNMTISSKNLTTKSTLLSSQMSQLLNGTIKPGDEDLTNLTFEDLNNLNANSNQKDVDMAIQKYSSRMNAFITSIKNKQMDMKNASIHFSKLNEMLRRAWAVPTYGHELGYSLCNTLRTSGGLDILMANCLESNNPELQFSSAKLLEQCLTTENRAHVVENGLEKVVNVACVCTKNANSVDHSRVGTGILEHLFKHSESTCDDVIKLGGLDAVLFECRKNDVETLRHCATALANLSLYGGAENQEAMIKRKVPMWLFPLAFHNDDNIKYYACLAIAVLVANKEIEAAVLKSGTLDLVEPFVTSHNPSEFARSNLAHAHGQSKNWLKRLVPVLSSKREEARNLAAFHFCMEAGIKKQQGNTEIFREIGAIESLKKVASCPNAVASKYAAQALRLIGEEVPHKLSQQVPLWSIEDVREWVKQIGFSEYATNFYESRVDGDLLLQITEENLKEDIGLQNGIKRKRFTRELQQLKKMADYTSRDTGSLNEFLQSIGPEYTIYTYSMLNAGVDKESIRGLSDEQLESECRIGNSIHRLRILNAIKAYENSLPSKGEENMEKNLDVFVSYRRSNGSQLASLLKVHLQLRGFTVFIDVERLEAGKFDNNLLQSIRQAKHFLLVLTPNALDRCKSDHDRKDWVHREIVAALQSQCNIVPIIDNFEWPKAEELPEDMRAVCHFNGVRWIHDYQDACVEKLESFLRGKSNLANRLEGQLRGRGDVQTPGTATIGRGPPNYQRMASCESRGSDKAD

Summary

EMBL
NWSH01000351    PCG77140.1    PCG77143.1    PCG77142.1    ODYU01009998    SOQ54780.1    + More
PCG77135.1    RSAL01000073    RVE49008.1    PCG77138.1    KX778610    AON96652.1    BABH01008720    PCG77141.1    PCG77139.1    AGBW02013342    OWR43570.1    KQ461198    KPJ06180.1    KQ459606    KPI91585.1    KQ976736    KYM76083.1    KQ979479    KYN21297.1    KQ976806    KYN08197.1    ADTU01013666    ADTU01013667    KQ981490    KYN41319.1    NEVH01002992    PNF40972.1    KK853689    KDQ97276.1    GEZM01005824    JAV95886.1    GEZM01005823    JAV95888.1    KQ434936    KZC11875.1    QOIP01000010    RLU17822.1    KK107455    EZA50513.1    GBYB01013644    JAG83411.1    GEZM01005826    JAV95882.1    GEZM01005825    JAV95884.1    GBYB01013647    JAG83414.1    GEDC01027322    JAS09976.1    GBYB01013643    JAG83410.1    GBYB01013912    JAG83679.1    GFDF01000841    JAV13243.1    GFDF01000842    JAV13242.1    LBMM01000947    KMQ97161.1    GL446149    EFN88463.1    GFDF01000847    JAV13237.1    GL436754    EFN71525.1    KQ971372    KYB25339.1    GBBI01002987    JAC15725.1    KYB25338.1    GBGD01000282    JAC88607.1    KZ288226    PBC31901.1    GL888103    EGI67415.1    GECL01003089    JAP03035.1    GFTR01008463    JAW07963.1    GBYB01013645    JAG83412.1    DS234993    EEB10024.1    KQ414582    KOC70905.1    KA646204    AFP60833.1    KA646205    AFP60834.1    GBRD01010648    GBRD01010646    JAG55176.1    GAMC01021615    JAB84940.1    GBRD01010647    GBRD01006414    JAG55177.1    GBRD01010650    GBRD01010649    JAG55174.1    GDHF01014247    JAI38067.1    GFDL01000183    JAV34862.1    GFDL01000180    JAV34865.1    CVRI01000035    CRK92905.1    GAKP01022292    JAC36660.1    CH902618    KPU78536.1    KPU78541.1    CH954178    KQS43265.1    GGFM01006769    MBW27520.1    KPU78537.1    GDHF01010016    JAI42298.1    KPU78539.1    KQS43260.1    GDHF01028399    GDHF01005600    JAI23915.1    JAI46714.1    GDHF01002313    JAI50001.1    KQS43259.1    KQS43263.1    KQS43262.1    KQS43264.1    CH478527    EAT32828.1    CM002912    KMY98263.1    CM000159    KRK01421.1    KRK01420.1    KQS43266.1    KMY98267.1    KMY98261.1    AXCN02000924    AE014296    ABW08491.1    ABW08490.1    AGB94251.1    KRK01425.1   
Pfam
PF07647   SAM_2        + More
PF13676   TIR_2
PF15928   DUF4746
PF00536   SAM_1
PF00400   WD40
Interpro
IPR039184   SARM1        + More
IPR000157   TIR_dom       
IPR016024   ARM-type_fold       
IPR013761   SAM/pointed_sf       
IPR035897   Toll_tir_struct_dom_sf       
IPR011989   ARM-like       
IPR001660   SAM       
IPR031827   DUF4746       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR011993   PH-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR001849   PH_domain       
IPR019775   WD40_repeat_CS       
SUPFAM
SSF47769   SSF47769        + More
SSF52200   SSF52200       
SSF48371   SSF48371       
SSF50978   SSF50978       
PDB
3TAD     E-value=0.00073032,     Score=106

Ontologies

Topology

Length:
1108
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1108
 
 

Population Genetic Test Statistics

Pi
294.664958
Theta
20.013227
Tajima's D
1.525981
CLR
0.370892
CSRT
0.794060296985151
Interpretation
Uncertain
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