Gene

KWMTBOMO05603

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr10(-):6020789-6021251      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.665 Nuclear   Reliability : 2.297

CDS

ATGCAAGACCGTCGTAAGATCGACGCACTAGAAATGTGGTGTTGGAGACGTCTCCTCAGAATTCCGTGGACCGCGCACCGTACCAACATTTCGATCCTGAAAGAGCTCAACATCAAGGAGAGACTATCGTCAACAGTCCAATTACGAATCCTCAAATTCTTCGGGCACATCACTCGTAATGAGGACTCCATTGAGCGGTTGGTGGTGCAAGGGAAAGTCGAGGGCAAAAGATCTCGCGGACGATCTCCAACACGATGGACCGACCTCATAAAATCTGTTACTCACTCCAACATAAATGCTTGCTCTCACTCTGCGAAACATCGTGCCACATGGCGTCGCATCGCGAGAGCATCGGTATCGCAGGATCCGACTGATGCATGA

Protein

MQDRRKIDALEMWCWRRLLRIPWTAHRTNISILKELNIKERLSSTVQLRILKFFGHITRNEDSIERLVVQGKVEGKRSRGRSPTRWTDLIKSVTHSNINACSHSAKHRATWRRIARASVSQDPTDA

Cofactor

pyridoxal 5'-phosphate

Uniprot

D7F162   D7F163   S4NYG9   D7F167   D7F175   A0A3S2L0R7   + More
A0A2H1W7G4   D7F174   A0A2W1BGD9   D7F172   A0A2H1V742   D7F161   A0A2H1VU13   A0A194PHS9   D5LB39   A0A2H1VNK5   D7F168   A0A2G8LJK7   A0A2G8K183   A0A2G8K327   A0A2G8JVI4   A0A2G8JVA1   A0A2G8L6P4   W4YPU3   A0A2G8KTJ4   A0A2G8JE23   A0A0B7BUS3   A0A3S3NR17   A0A3S3RLW1   A0A2W1B3R1   A0A2G8K796   A0A0B7BSZ9   A0A0B7BUR9   H2YWZ6   A0A0B7BT80   A0A085LZ21   A0A3Q1MCX3   A0A085NA37   A0A0B7BSC2   W5NMM5   A0A3S3P648   A0A3Q1LT03   H2YWZ5   A0A0B7BVD9   A0A0B7BVD3   A0A0B7BSB6   A0A3S1HJZ0   A0A3Q1M4E7   A0A3Q1LR75   A0A3Q1LLH3   A0A3S0ZE77   A0A3S1AZH6   O97916   A0A0L8GBP3   A0A2S2NMQ2   W4Y921   A0A2W1BSS7   X1D4L4   A0A3Q1M4J9   A0A3Q1M7G0   A0A151IIH7   W5MM77   A0A3Q1M2T8   W5NLK6   A0A3Q1MXT5   A0A0B7BVF2   A0A3Q1NB85   W5NIE2   A0A3Q1N9K5   A0A0B7BT11   A0A3Q1MN71   A0A3Q1M8I7   A0A3Q1LP60   A0A3Q1MMS2   F6R5D0   A0A3Q1MDY8   A0A3Q1MGA3   X1WK45   A0A3Q1M297   A0A3Q1NE26   A0A3Q1LKN4   A0A3Q1MIT2   A0A3Q1MVY4  

Pubmed

20470440    23622113    28756777    26354079    29023486    24929829    + More
19393038    10555285    24624126   

EMBL

FJ265547    ADI61815.1    FJ265548    ADI61816.1    GAIX01008594    JAA83966.1    + More
FJ265552    ADI61820.1    FJ265560    ADI61828.1    RSAL01000289    RVE42931.1    ODYU01006805    SOQ48998.1    FJ265559    ADI61827.1    KZ150203    PZC72267.1    FJ265557    ADI61825.1    ODYU01001007    SOQ36619.1    FJ265546    ADI61814.1    ODYU01004401    SOQ44236.1    KQ459603    KPI92872.1    GU815090    ADF18553.1    ODYU01003523    SOQ42419.1    FJ265553    ADI61821.1    MRZV01000056    PIK60437.1    MRZV01000994    PIK41715.1    MRZV01000940    PIK42365.1    MRZV01001207    PIK39730.1    MRZV01001216    PIK39650.1    MRZV01000196    PIK55924.1    AAGJ04055194    MRZV01000378    PIK51329.1    MRZV01002322    PIK33998.1    HACG01049256    CEK96121.1    NCKU01012182    RWS00163.1    NCKU01008836    RWS01655.1    KZ150366    PZC71172.1    MRZV01000817    PIK43880.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    KL363256    KL367985    KFD50217.1    KFD59415.1    KL363266    KL367526    KFD49675.1    KFD66333.1    HACG01049254    CEK96119.1    AHAT01022938    NCKU01004395    RWS06003.1    HACG01049255    CEK96120.1    HACG01049245    CEK96110.1    HACG01049249    CEK96114.1    RQTK01000360    RUS81011.1    RQTK01000625    RUS76894.1    RQTK01000685    RUS76136.1    AJ132772    CAA10770.1    KQ422743    KOF74343.1    GGMR01005851    MBY18470.1    AAGJ04161766    KZ149985    PZC75696.1    BART01031562    GAH15691.1    KQ977522    KYN02133.1    AHAT01015286    AHAT01012943    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    AHAT01009145    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    ABLF02024992    ABLF02024994    ABLF02025002    ABLF02043975   

Proteomes

UP000283053    UP000053268    UP000230750    UP000007110    UP000285301    UP000007875    + More
UP000009136    UP000018468    UP000271974    UP000053454    UP000078542    UP000007819   

PRIDE

D7F162    D7F163    D7F167    D7F175    D7F174    D7F172    + More
D7F161    D5LB39    D7F168   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF05699   Dimer_Tnp_hAT
PF03221   HTH_Tnp_Tc5
PF04218   CENP-B_N
PF00282   Pyridoxal_deC

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR008906   HATC_C_dom       
IPR002138   Pept_C14_p10       
IPR006600   HTH_CenpB_DNA-bd_dom       
IPR007889   HTH_Psq       
IPR009057   Homeobox-like_sf       
IPR015424   PyrdxlP-dep_Trfase       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR021115   Pyridoxal-P_BS       
IPR002129   PyrdxlP-dep_de-COase       

SUPFAM

SSF56219   SSF56219        + More
SSF46689   SSF46689       
SSF53383   SSF53383       

Gene 3D

3.60.10.10     3.40.640.10    

ProteinModelPortal

D7F162   D7F163   S4NYG9   D7F167   D7F175   A0A3S2L0R7   + More
A0A2H1W7G4   D7F174   A0A2W1BGD9   D7F172   A0A2H1V742   D7F161   A0A2H1VU13   A0A194PHS9   D5LB39   A0A2H1VNK5   D7F168   A0A2G8LJK7   A0A2G8K183   A0A2G8K327   A0A2G8JVI4   A0A2G8JVA1   A0A2G8L6P4   W4YPU3   A0A2G8KTJ4   A0A2G8JE23   A0A0B7BUS3   A0A3S3NR17   A0A3S3RLW1   A0A2W1B3R1   A0A2G8K796   A0A0B7BSZ9   A0A0B7BUR9   H2YWZ6   A0A0B7BT80   A0A085LZ21   A0A3Q1MCX3   A0A085NA37   A0A0B7BSC2   W5NMM5   A0A3S3P648   A0A3Q1LT03   H2YWZ5   A0A0B7BVD9   A0A0B7BVD3   A0A0B7BSB6   A0A3S1HJZ0   A0A3Q1M4E7   A0A3Q1LR75   A0A3Q1LLH3   A0A3S0ZE77   A0A3S1AZH6   O97916   A0A0L8GBP3   A0A2S2NMQ2   W4Y921   A0A2W1BSS7   X1D4L4   A0A3Q1M4J9   A0A3Q1M7G0   A0A151IIH7   W5MM77   A0A3Q1M2T8   W5NLK6   A0A3Q1MXT5   A0A0B7BVF2   A0A3Q1NB85   W5NIE2   A0A3Q1N9K5   A0A0B7BT11   A0A3Q1MN71   A0A3Q1M8I7   A0A3Q1LP60   A0A3Q1MMS2   F6R5D0   A0A3Q1MDY8   A0A3Q1MGA3   X1WK45   A0A3Q1M297   A0A3Q1NE26   A0A3Q1LKN4   A0A3Q1MIT2   A0A3Q1MVY4  

KEGG

105842503    no KO assigned | (RefSeq) uncharacterized LOC105842503

GO

GO:0004519   GO:0003964   GO:0016021   GO:0046983   GO:0004197   GO:0003677  

Length:

126

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.48459

outside

1  -  126

 

 

Pi

135.387439

Theta

118.358575

Tajima's D

0.451646

CLR

0.307539

CSRT

0.501374931253437

Interpretation

Uncertain