Gene

KWMTBOMO05601

Pre Gene Modal

BGIBMGA006572

Annotation

PREDICTED:_patched_domain-containing_protein_3_[Amyelois_transitella]

Location

Bomo_Chr10(-):5804404-5857701      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.675

CDS

ATGGGTTGTTGCAAACTGACAATCGTTGATGATGTCCTGAACAGGTCTTTCTACAAACTGGGCCTGGCCGTCGGCAGACAGCCCGGCTACTTCATAATAATACCGGTACTACTAACCTTGCTCATGGTAACCGGATATCAAAGGATTCATTATGAGATGGACCCGGAATATTTGTTTTCGCCTGTTAGCGGACAAGGAAAGTTGGAAAGGAGGGTAGTTGAAGAGCACTTCAAAGTTAACTACTCGCACAGATTTAACGTTGGCAGAATTACACGAGCAGGAAGATTTGGTCGAGTAATTATAGTGGCCAAAGACAACAATACTAACTTACTGCGAACCGAAATATGGAAAGAATTAAGGGAATTGGATGATCTGGTGCAAAACGTAACAGTCACGTTACCGACTGGAGAGACTTTCACGTATCGTGAAGAGTGCGCCAGATGGGAGGGGCAATGCTTCGTCAACGACATACTGAACTTAGACAAAATAATAGGCGAGGTGGAGCGCGGCGAGTTAAATCTGACTTTCCCAATAATGTTCAATCCCGTGACGTGGGAAGCACATGCATTTCCAGTATACTTTGGAGGAAGTCAAGTGGTTGATGATGTTATAGTGTCAGTGCCAGCCGTGCAATTGGTGTGGTTTGTTAGAACGGATACTAAAATACAGGAACAAAGGGGTGCGGCGTGGGAAGACGCGTTTTTGGACGCGGTGGGTATCGCCGAAGATACTGGCCGATTCAAGCACATATCGGTGGCTCGATTCGCTTCACGAACTCTTGACCATGAACTCGAAAAGAACACAAGAACCGTGATACCGTTCTTTAGTTCTACTTTCATTTTGATGGGTGTATTTTCAGTCGTCACTTGTTTGATGGGTGATTGGGTGCGTTCGAAGCCTTGGTTAGGATTACTGGGTAACATATCAGCCGTTATGGCCACGGCCGCAGCATTTGGCTGCGCGATATACTTAGGCATCTCTTTCATTGGAATAAATTTAGCGGCACCCTTCCTAATGATTGGTATCGGCATTGATGATACTTTTGTGATGTTGGCTGCGTGGAGAAGGGCTTCCCCAAAACTACCGGTTCCGGAACGCATGGCATCTATGTTATCAGAAGCCGCTGTTTCCATTACGATAACGTCGGTAACGGACATGTTGTCATTTTTCATTGGAATCTTTTCCCCGTTTCCATCTGTACAAATATTCTGCATGTACTCAGGTCTGGCGGTGTGTTTCACTTTTGTTTGGCATCTAACATTCTTTGCCGGTTGCGTCGCAGTTTCGGGATATCGTGAAAAACAAAACAGACACACAATTACTATGCTCAAAGTTTTGCCTGAATCGAGAGCACGTAAAGAAGAAAAATCGTGGTTATACAGGGCTTTCTGCAGCGGGGGCATTGATCCAGCCGATCCCGATAATCCAATTGACAATAAGGAACATTGTATCATGGCCTTCTTCCGTACAACCATGGCCGATTTGTTGAACCATAACGGAGTTAAAGCTTTCGTAATAGTTATATTCCTACTGTACTTGGCTGGAGCCGGTTACGGTGTTACCAATCTGAAGGAAGGTTTGGAAAGAAGAAAGCTGTCTAAAGTGGATTCATACTCTGTCGAGTTCTTCGATAGGGAGGATCTTTATTACAGAGAATTTCCATACAGGATACAGGTGGTAATTAGCGGTCAATACAATTATTCAGATACTTTAGTACAGGCTGAAGTTGAAAAACTGACAAAACGTTTGGAAAGCACATCGTACATATCGAATTCACTGTACACGGAGTCGTGGCTTAAAACGTTTTTGGATTACGTATCTGCTAATAACGACTATTTGAATGTGACTATCGATAACGAAGTTGACTTCATACAGAATCTCAAAGAGTTGTGGCTGTTTCCCGCTAATCCTTTCTCATTGGATGTCAAATTTAACGACGCCGGAGACCAAATCGTTGCTTCCAGGTTTCTGATACAAGCTATCAATATAAGTGGTACAAACCATGAAAAGGAAATGGTCAAAGCGTTAAGAACTATAGTTGCTGAATCACCGTTGAATGCTTCAGTGTTCCATCCGTATTTCGTATTTTTCGACCAGTTCGAGCTTGTTAAGCCTACATCAATTCAAAATTTGTGCTATGGAGCATTAATGATGATGATTACATCATTTATATTCATACCAAACATCTTGTGCTCGCTATGGGTGGCGTTTAGTATAATATCGATTGAGGTCGGTGTGGTCGGTTATATGGCCCTATGGGATATAAATCTCGATTCAATATCAATGATCAATCTCATCATGTGCATCGGTTTTTCTGTCGACTTCACTGCACATATATGCTATGCCTACATGGCATCTAAAGCGAAATACCCTCACGAACGAGTCAGCGAATGCTTATACTCTCTGGGATTACCAATAGTGCAAGGCTCTTTCAGCACAATTCTCGGTGTCATCGCATTGCTTCTCGCTGACAGTTACATATTCTCTGTATTCTTTAAAATGGTATTCATGGTAATATTCTTTGGAGCGATGCACGGTCTATTCTTATTACCGGTTTTACTGTCTTTGTTCGGACCAGGATCCTGCACAAGAAAATCAGACGATATGAAGATGTCGAAACTCGAAAAGTTTCCTAGCCCGTATTGTATACCGCACCCTCAGCTGATGTTGAACGATCAAATTTACAACAGCAAAAATTTGACCCCTAACGGAGTTTATAAAGGTTACGTGGACGATAAAGACCTGGGTATAGGGACGTCAGGCGAAGACACAAGTGAAAGCAGCTCTAATCAATCACAAAGACGACAAATCACCGAAAATGACAACGGACGCAAGCAATACGATGAAACAGGTTGGAAAAGATCGAATTATTGCCAAAGTTCGAGCCAATTTCAACCCTCCGGAGAATTAGATCCTTTCGGGCAAGACGTAGAAAGGAACTGGCATCGACAGCGCTATGAAAATAACCGTCGCACTTTTGAGAATTACGGTAAGCCTACACCCATTTCGAGGACCAGAGACGATGATTGGGTAACATCAACACGCAAAACCAGTGACACTGGACCTCGTCGAGAGGGTACATATAGAGTAATGCGGGCGCATTCACATCACAACCTCCACAGGCCCAGAGCTCCTCGTCGGTCTAACTCTCAGCATAATCTGGATCATTTAGATTACGTCGCAGAAATGCGATTTCCCTGA

Protein

MGCCKLTIVDDVLNRSFYKLGLAVGRQPGYFIIIPVLLTLLMVTGYQRIHYEMDPEYLFSPVSGQGKLERRVVEEHFKVNYSHRFNVGRITRAGRFGRVIIVAKDNNTNLLRTEIWKELRELDDLVQNVTVTLPTGETFTYREECARWEGQCFVNDILNLDKIIGEVERGELNLTFPIMFNPVTWEAHAFPVYFGGSQVVDDVIVSVPAVQLVWFVRTDTKIQEQRGAAWEDAFLDAVGIAEDTGRFKHISVARFASRTLDHELEKNTRTVIPFFSSTFILMGVFSVVTCLMGDWVRSKPWLGLLGNISAVMATAAAFGCAIYLGISFIGINLAAPFLMIGIGIDDTFVMLAAWRRASPKLPVPERMASMLSEAAVSITITSVTDMLSFFIGIFSPFPSVQIFCMYSGLAVCFTFVWHLTFFAGCVAVSGYREKQNRHTITMLKVLPESRARKEEKSWLYRAFCSGGIDPADPDNPIDNKEHCIMAFFRTTMADLLNHNGVKAFVIVIFLLYLAGAGYGVTNLKEGLERRKLSKVDSYSVEFFDREDLYYREFPYRIQVVISGQYNYSDTLVQAEVEKLTKRLESTSYISNSLYTESWLKTFLDYVSANNDYLNVTIDNEVDFIQNLKELWLFPANPFSLDVKFNDAGDQIVASRFLIQAINISGTNHEKEMVKALRTIVAESPLNASVFHPYFVFFDQFELVKPTSIQNLCYGALMMMITSFIFIPNILCSLWVAFSIISIEVGVVGYMALWDINLDSISMINLIMCIGFSVDFTAHICYAYMASKAKYPHERVSECLYSLGLPIVQGSFSTILGVIALLLADSYIFSVFFKMVFMVIFFGAMHGLFLLPVLLSLFGPGSCTRKSDDMKMSKLEKFPSPYCIPHPQLMLNDQIYNSKNLTPNGVYKGYVDDKDLGIGTSGEDTSESSSNQSQRRQITENDNGRKQYDETGWKRSNYCQSSSQFQPSGELDPFGQDVERNWHRQRYENNRRTFENYGKPTPISRTRDDDWVTSTRKTSDTGPRREGTYRVMRAHSHHNLHRPRAPRRSNSQHNLDHLDYVAEMRFP

Uniprot

A0A1L2D6R5   A0A2H1WTD7   A0A2A4JY65   A0A194PEZ9   A0A212FKD3   A0A1C9EGM5   + More
A0A194QRM7   A0A0L7LDD9   H9JAM7   Q17LN2   A0A084W6U5   A0A182Q3L7   A0A023EWC3   A0A1S4H4P3   Q7PRH6   A0A139WCA8   A0A1Y1NIC1   A0A336K2U8   A0A0K8UBW4   A0A2J7QI84   A0A0L0BTK5   A0A1I8NTH2   W8B1J6   A0A1B0BX71   A0A1A9V1S5   A0A067QLA5   B4J489   B4MR35   B4NYU3   A0A1B0AG94   A0A0J9R699   Q86P36   B4LIL7   B4II44   B3NB69   A0A1W4V2B9   A0A0M4EWW5   B4KUI3   A0A0R1DVD4   B3MJ63   A0A1J1I1H5   B5E1M9   A0A158P0Z3   A0A195AUN0   B4HBD3   F4WTY0   A0A3B0JL01   A0A151J1H4   A0A151IPA3   A0A1B6CYR1   A0A0T6AWY4   A0A0L7QSL4   A0A151WWG6   A0A154PDC9   A0A151JUM0   A0A023F4K6   A0A0V0G2T1   A0A069DXM1   A4GVR7   A0A3L8E3A2   A0A224XE10   E2BA38   A0A0P4VN91   T1H8R3   J9JQ05   E1ZW52   A0A2A3EFB6   A0A0A9X8T6   A0A2H8TP81   A0A146L5X5   A0A1B6JHV1   A0A1S3DUH4   A0A0C9QXC8   N6SYM9   A0A2P8YWU5   K7IPV6   A0A232F287   A0A1B0G727   E0W0L7   E9IAD8   A0A1A9XIF1   A0A1A9WQZ3   B4QD75   A0A3B0J2I8   W8BB82   A0A087ZSR5   A0A2R7X378   A0A0P4VZS3   A0A1D2MK48   A0A226E2D1   A0A2P2HXT6   A0A3S4R506   A0A0N0BH07   A0A0K2T5I5   T1GSJ1  

Pubmed

26354079    22118469    26227816    19121390    17510324    24438588    + More
24945155    12364791    18362917    19820115    28004739    26108605    24495485    24845553    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    15632085    21347285    21719571    25474469    26334808    18563713    30249741    20798317    27129103    25401762    26823975    23537049    29403074    20075255    28648823    20566863    21282665    27289101   

EMBL

KR338939    AMR74905.1    ODYU01010914    SOQ56318.1    NWSH01000389    PCG76749.1    + More
KQ459606    KPI91598.1    AGBW02008063    OWR54203.1    KX778610    AON96648.1    KQ461198    KPJ06191.1    JTDY01001599    KOB73414.1    BABH01008690    BABH01008691    CH477214    EAT47579.1    ATLV01020950    ATLV01020951    ATLV01020952    ATLV01020953    KE525310    KFB45939.1    AXCN02002295    GAPW01000068    JAC13530.1    AAAB01008849    EAA07199.5    KQ971371    KYB25536.1    GEZM01001584    JAV97652.1    UFQS01000061    UFQT01000061    SSW98787.1    SSX19173.1    GDHF01028499    JAI23815.1    NEVH01013957    PNF28292.1    JRES01001352    KNC23395.1    GAMC01019450    GAMC01019449    JAB87106.1    JXJN01022098    KK853300    KDR08758.1    CH916367    EDW00569.1    CH963849    EDW74574.1    CM000157    EDW89794.1    CM002911    KMY91712.1    AE013599    BT003500    AAF57274.2    AAO39504.1    AFH07900.1    AFH07901.1    CH940648    EDW60387.2    CH480841    EDW49570.1    CH954177    EDV59834.1    CP012524    ALC42675.1    CH933808    EDW10770.2    KRG05467.1    KRJ98710.1    CH902619    EDV38157.1    CVRI01000038    CRK94133.1    CM000071    EDY69532.2    ADTU01005915    ADTU01005916    ADTU01005917    KQ976738    KYM75767.1    CH479252    EDW38675.1    GL888345    EGI62337.1    OUUW01000001    SPP73321.1    KQ980514    KYN15729.1    KQ976878    KYN07667.1    GEDC01018770    JAS18528.1    LJIG01022611    KRT79642.1    KQ414756    KOC61632.1    KQ982691    KYQ52156.1    KQ434868    KZC09210.1    KQ981732    KYN36560.1    GBBI01002500    JAC16212.1    GECL01003692    JAP02432.1    GBGD01000318    JAC88571.1    EF442429    ABO28476.1    QOIP01000001    RLU27167.1    GFTR01008398    JAW08028.1    GL446664    EFN87447.1    GDKW01002634    JAI53961.1    ACPB03020617    ABLF02028363    ABLF02028367    GL434776    EFN74561.1    KZ288266    PBC30174.1    GBHO01030090    GBHO01030089    JAG13514.1    JAG13515.1    GFXV01004014    MBW15819.1    GDHC01016003    JAQ02626.1    GECU01008922    JAS98784.1    GBYB01005302    JAG75069.1    APGK01058856    APGK01058857    APGK01058858    APGK01058859    APGK01058860    KB741292    ENN70323.1    PYGN01000312    PSN48726.1    NNAY01001161    OXU24936.1    CCAG010003764    DS235861    EEB19173.1    GL762003    EFZ22481.1    CM000362    EDX05862.1    SPP73322.1    GAMC01019451    JAB87104.1    KK856273    PTY25355.1    GDRN01095418    JAI59530.1    LJIJ01001034    ODM93265.1    LNIX01000007    OXA51440.1    IACF01000676    LAB66436.1    NCKU01001607    NCKU01001606    NCKU01001540    NCKU01001539    RWS11672.1    RWS11674.1    RWS11862.1    RWS11869.1    KQ435760    KOX75554.1    HACA01003355    CDW20716.1    CAQQ02129062    CAQQ02129063    CAQQ02129064   

Proteomes

UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    UP000005204    + More
UP000008820    UP000030765    UP000075886    UP000007062    UP000007266    UP000235965    UP000037069    UP000095300    UP000092460    UP000078200    UP000027135    UP000001070    UP000007798    UP000002282    UP000092445    UP000000803    UP000008792    UP000001292    UP000008711    UP000192221    UP000092553    UP000009192    UP000007801    UP000183832    UP000001819    UP000005205    UP000078540    UP000008744    UP000007755    UP000268350    UP000078492    UP000078542    UP000053825    UP000075809    UP000076502    UP000078541    UP000279307    UP000008237    UP000015103    UP000007819    UP000000311    UP000242457    UP000079169    UP000019118    UP000245037    UP000002358    UP000215335    UP000092444    UP000009046    UP000092443    UP000091820    UP000000304    UP000005203    UP000094527    UP000198287    UP000285301    UP000053105    UP000015102   

PRIDE

H9JAM7    Q86P36   

Pfam

PF02460   Patched        + More
PF05875   Ceramidase

Interpro

IPR003392   Ptc/Disp        + More
IPR000731   SSD       
IPR008901   ACER       

ProteinModelPortal

A0A1L2D6R5   A0A2H1WTD7   A0A2A4JY65   A0A194PEZ9   A0A212FKD3   A0A1C9EGM5   + More
A0A194QRM7   A0A0L7LDD9   H9JAM7   Q17LN2   A0A084W6U5   A0A182Q3L7   A0A023EWC3   A0A1S4H4P3   Q7PRH6   A0A139WCA8   A0A1Y1NIC1   A0A336K2U8   A0A0K8UBW4   A0A2J7QI84   A0A0L0BTK5   A0A1I8NTH2   W8B1J6   A0A1B0BX71   A0A1A9V1S5   A0A067QLA5   B4J489   B4MR35   B4NYU3   A0A1B0AG94   A0A0J9R699   Q86P36   B4LIL7   B4II44   B3NB69   A0A1W4V2B9   A0A0M4EWW5   B4KUI3   A0A0R1DVD4   B3MJ63   A0A1J1I1H5   B5E1M9   A0A158P0Z3   A0A195AUN0   B4HBD3   F4WTY0   A0A3B0JL01   A0A151J1H4   A0A151IPA3   A0A1B6CYR1   A0A0T6AWY4   A0A0L7QSL4   A0A151WWG6   A0A154PDC9   A0A151JUM0   A0A023F4K6   A0A0V0G2T1   A0A069DXM1   A4GVR7   A0A3L8E3A2   A0A224XE10   E2BA38   A0A0P4VN91   T1H8R3   J9JQ05   E1ZW52   A0A2A3EFB6   A0A0A9X8T6   A0A2H8TP81   A0A146L5X5   A0A1B6JHV1   A0A1S3DUH4   A0A0C9QXC8   N6SYM9   A0A2P8YWU5   K7IPV6   A0A232F287   A0A1B0G727   E0W0L7   E9IAD8   A0A1A9XIF1   A0A1A9WQZ3   B4QD75   A0A3B0J2I8   W8BB82   A0A087ZSR5   A0A2R7X378   A0A0P4VZS3   A0A1D2MK48   A0A226E2D1   A0A2P2HXT6   A0A3S4R506   A0A0N0BH07   A0A0K2T5I5   T1GSJ1  

PDB

5JNX     E-value=8.0696e-29,     Score=321

KEGG

101740298    no KO assigned | (RefSeq) patched domain-containing protein 3

GO

GO:0016021   GO:0005886   GO:0030659   GO:0006672   GO:0016811   GO:0007165   GO:0016020   GO:0007264   GO:0001664   GO:0005525   GO:0003824  

Length:

1066

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

255.53712

Exp number, first 60 AAs:

21.00837

Total prob of N-in:

0.32538

POSSIBLE N-term signal

sequence

inside

1  -  28

TMhelix

29  -  51

outside

52  -  269

TMhelix

270  -  292

inside

293  -  303

TMhelix

304  -  326

outside

327  -  330

TMhelix

331  -  353

inside

354  -  373

TMhelix

374  -  396

outside

397  -  405

TMhelix

406  -  428

inside

429  -  498

TMhelix

499  -  521

outside

522  -  706

TMhelix

707  -  726

inside

727  -  730

TMhelix

731  -  753

outside

754  -  762

TMhelix

763  -  785

inside

786  -  797

TMhelix

798  -  820

outside

821  -  834

TMhelix

835  -  857

inside

858  -  1066

 

 

Pi

203.598931

Theta

181.680595

Tajima's D

0.360462

CLR

0.500524

CSRT

0.469176541172941

Interpretation

Uncertain