SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO05600
Pre Gene Modal
BGIBMGA006763
Annotation
PREDICTED:_telomere-associated_protein_RIF1-like_[Bombyx_mori]
Location
Bomo_Chr10(+):5789942-5803480      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.904
 

Sequence

CDS
ATGCCTGAATACGATGCAGCGCTACTGAAGGAAGTTGTCTGCCGTTTGGAAGATAACTCCCTCGAAAATGACAAAAGCAGACGCCAAAATTATGAGATTCTGGTAAAATGCTTAGATGATGAAGTGGATGTAAATATTAGTGTAGTGAAGAAAATTTTGAACATTTGTGAACATGATATGAAACAGAACATGAAATACACTGCATTCAACTTAACCATTATCTTGAAAATCTTAGAAAGAGTGAAGGCTGGAAAATTACCACAAACTCTGAATTTTGTGTCAACTGCTCTTGTGATACTCGATGTAATCAATGCTACAGCTTTATTGAGCAAAATAGAACACATAAGAACTTTATGCACCGAAACAATGATACAGTTTCCAGATGAGACACTTGTTAAACTCGCTATGTGTTATACAAATAAAATTATGGAATTCTTTGAAGTTAGTAAATATCACAAATTTCCACTGGAATCTAGGATCCTGTTTTTTCAGATAATCCTGAAAATCATCAAGGTATTACCACCTGAGAAGAAAATAGAATTTGTGAATGAAGGTTTATCAGTGTGGTTATCAAAGCTAATACCTACAATAGTTACTTATTTGAATCATGACTGTAGTGTTTCTTGTATGAAATGTATCGAACTTCTAGAACTGTTGACTAATGAAATTTTGAGGATAGATTACACCAAAGACATTTATTGGGAATGTCTATATCAAAATATTTCTAATCCTAGTAGGTATCCACTTCTAATGAAGAAGCTTCTAGAAAATGGCAGTTCACTGTGGCACAGACTTTGGATTGTATGCATCAAACTTCTTGGCCATCAAATAACCCGCAACGTTTCAGGTATGGGTACACCAATCAACTCAATGCTGCCTGTCGTTGAAGCAGCATTCAAGATTGATGCTGATAATCGTTGTAGAGCTTTTCAGTGTTGGTCAGTTCTAATTGATACATTTGCCAAAGAAACGAATGACAACTGTGTAAACAAAAGGCTAAAATTACTTGTGATTCCACTAAGGCTTAATAATGCAAAAGTTGAAGAGACAGCTCTAGCTAAGTTTGAAACATGGTGGCACTTGATAGTGAAATTCAGTACGAGACTTGGTGTATTTACTGATGTAGTACTGACATCATTTCTACATTTTTGTTTTGGAAAATACAATGCATCAGGAAAACCCTCATTTATTCCTGGTCAAATATCAGACAAGCTATCAATGAAATGTGTTGATGCATTTGTTGAGATTGTTGGACATGTTGGTTGTGAGGGATGCACTGATGTGCCAAGGTTAAAGGAAAGATTATTGAAAAAAAAATATTTAATAGAACATTGGCATGATTGGTCTTATTCACTGAAAACTGCTATAAATTTACTAATAAAAAAGGGTAACGAGGACTCACAAAAGCAAATGTCATGTATTTGGAAATCTTTTCTTTTGACGGTTGGAGAATTGCCTGATAATAATATTAGGACAGATCTAGTTAATGAATTGTTAAACCATTTTGAGAATTTTGTTGAGGAAAGTAAAAGTGACCAAAAAAAAGTTGAACTTGTATTTAACTCATTAGTAATTACCTTGTTTGATGACGAAACGAAAATAAGTCAATTGTTCAACTCGCAAACTGAAGACGATGGAATACTGCACAGAATTATTAGCATACTTGTAGATCCAGCATTTAATTCTTTTTATCGTCATAAAAACACAACAGAGATGATACAAAAATTAAAACCCATAGCATATTTTATTCTTGAGGAATCTATAAATTCAAAAAAGCTTATATTCTTGAAATGGGTTTTGGATAAACTTCCATCAAATGACAACACACTTAAGATTTGGACAGCATTGGCAGAATTATTATGCGAGTCTGATTTCAATCTCTGCTCAACTAGTTTATCTTACATGGTTATATGGCCCTTGAAATCAATGAATCTATTTAATGATGTTAAATATTCTGCTAAAACTTGGCTCACGCTATACAATACAACGTTAGCAAAATTGAAAAAGACTGAATTGGATGAGAACATATCAAATATAATTCTATATTCAAACATTGTTACACAGTCTAGCACATATATGTCATTGTGTGCTTTGTTGGCTATCCTTAGTAATAGTTTAACGAAAGATGCAGGTTCAAAATACGACCAACAAGTAGAGTTAGTGCAAGTTTTGGTTAACAGAATCGATAATTATGAAGACATTGAAGATATATTTCCACTGTTAGTTGACATCATCATTGGAATTTGTAATCATGTGACAGAATCAGTTAACGAAACTCTGGAAGAACATGCAATGACGTGTGTTAAAAAAATCATGAAACTATTGATTCCTATTTTAAAACAAAACAGTGCTGTACAAAATACCAATCAAATTTTAATAGGAAAATTGCTGAAATCAGTTTATACAGTGTTACAAACAGCACTCTACCCAAAATCTCATTCAATCTTATATGATGTTCTAAAACAATACGCTGGATGTTTTAATGATAAGTTAATATTATTTGATGCTGTAGATTCCATTTTGAAATTAAATTCTACACAAGATAAGGAGAACAGCCCGCGGGATATGAATAGTGATTTAGAAAACTGTGAATCTTTAAAGCAAATGAACAAAAATGAGGCTACTAATAAAAAGTCTTGTACGCCTAACGCCAAGGAAGTTACAAAGAAAAAGAAACGAGAATCTAGCATAGTAAACACAGTAGTAGAAAATGGCGAAGAATTTGTTGTTGTCAAATCAAACTGGAAATTTAATCCTAAAAAGCTTACAGAAAATCAAAAAGAAAAATTCACAAGAAAACGAGAAGATATACCTGCCCTGTACCAAGACTTATCTCAATCTCAAGATGAATTTAAATTAACAAAGTGGAAAACAGACTCCCAAGACACAACAACAAATAGTAAATCAAACAGCAAGTCCGTGAACAATTTTGATAATCCAGAAATTAATCTTAAAGAAATGCCAGGTACCGACGTTGTTCCTACTATTATTGAAAACATACTTGGGGATAAAAAAGGAACAACATCTGGAATAGAGGCAGAATTAAGCCCAAAATCAATTACTACTGATAAAAAACGAGAAGTGCCCAAATCAAGAACACCACGAATGGCATTAAAAGATAGAATCTTTCATAATGTCAGGAATTTGATTGAGAAATCTATAACACCAGAAAAGCGTGCATCTACTGAAGATAAAAATTTGGAAAATTCCGTAAAAACTTCCACTTCCACAGACGTAAATATTGAAAATCTCGTTAATTCAGCCCCATCTTTGTTGCTCTCTGATAGGCCATCTCGTGTCAAAAGGAAGCCTAAAAAGTTTGATGATGCGGAACTCTTTGCTCTAAAAAAACGGCGTCACTCCCAGACAGATTCACAATCTGATGATCAAACTGTGGAGAAGCCTATGGATAATATAACAACAGATTTACAAATGAAAAAGAGTTCCAAAATAACTGACACGGTCAAAAAAAATATTGAAGAAAATAATTTGTCTGGAATAGTCTTGTTAATAGAGAGCACTGGTGATAAATATACTGAAAATACGGAGGTAGCGAAACTAACACCGAAAGTAAATAATATTGAACCAAGTGACAGTATTGAAACTAGTGACAGTATACAATCAGTAACTTTACATGAAGGAACCAAGGAGCAGGACATAATTGAGAAAGAAAAAATAACGACTAAGAATTTCGTGGCAACGACGGAAAAGGTAGACAGTGATAATGTTTCTACAGGCTCACAAGAAAATACCAGTGAAAAAAGATGTGCTAAGATTACTCATGTTGTACAAGTACACTCTACAGATGAAATCACAACTAAAAGCAAAGAAAGCTCTGCTCGAAAGAGCACTAATAAAAAATCACGAATTGAAAAGGAATTAGCCATTGACATGGTTGAAGGGCACCCATTTTTAAACACACCTACAACATCTCAAAAAAGAAATACTCGAAAAAGTTTAGTCACTCCCACAACTAATAAGACAAGTTTATCGGAAAAGTTAAATAAAACGAAAAATTCCGGGAAGAAAGATCTAAAAGAAGGTTTGAAAATAACGCAATTAAAGAGTACAAAGACACCTGATTCTCAAGGAGAAAGTTCACAAACTGATAAATCTCAAAGTTGTTCTGAGGATGTTATAGAAAGCTCTCAAGATTCGACATTAACTACTGTAAGTGTTATAAAAAAGACCCCTAAAAAGATAGCAATTGTCAGCATTGAAAAAATTTATGTTATTTCTAAGAACGACGCAAACGTTAATCGCACTAAAAGCCTATTGAAGGAACCAGATATTGAAATCATTGAATTTTCTGATGAGAAAATTAATTCGGACAATAACCCCGTCACAGTAAACGAAAGTGCAGCAGATAAAACTGTTGAAAGTAATATTACAAACATAGAACCAAACTCTTCTAACATGATGAACGATTCACAGTCTATAATTATTAATGAGACACCTTACTCTTGTCATGAAAGCAAAGACGATATTGAATTGCCTGTAAATAAAACTGTCATAGAAGAGAAAAATAAAACGGAATCAAGCGACATTACAAACACAGAGTCTTTAGCTGAAAAAGAAATATCAGACGATGTGGTTATTATAAACGATGATGACGTGCCAATAACGATTAGTAGTGAAGAAAAATCAATTCAACTTGAAAGTCAAGAATTAGCAGAAGCAGACACACAACCTATTGAGCACAATGATGAATTCAATACCAGTTCGAATCTAAATATGCCATGTGGCATGGAAGAGGAAAAATCAATAAACCAAAGTAATGAAACTGAAATCAATACACAAGACGACGCTACAAAAACGTTCACAGAATCAATGGATGTTTCAGTAGTAGTTGAGTCTACCAATGACGTGTCTTCTCCATACAAGAACGACGAACAGAGAAAAAAGGACTTTTTGAATAATACAGTTGAGATTTCTCCCATAAAAATATTAAGGCCCGATCTTGAAGACAAATCTCCATCTCCGGAGACGAGCAGAGACTACGTCGTTATAAAATTGACATCGCCAGTACATAGTAATGGAGAACCATTCGAAAAGGGGTCCCCAGAATTTTTTACAGAAGAAAAAGTATCTCCAGATAAAAGAGACCAATCTCCTCCTAGGCCTGAAGTAGTTGTCAACAACACAAGTCCTAATTCTTTACAGTCACTGAAAAAGAACAAACCTCAAGTACGAGCCGGCGGCCGTGCAGCTCAAATGCTCGGCCTATGTGTTCCTGATAATTTAAATTCAATTATGAAACCTGACAGATCTGATTATGAAGAAAGTAAAAAAAATAACCAGTCAACAACACCGGCTCGAAGAAATTTAAGAATATTGTATAACTCTGTTGGTGGCGGAATAGAAACAACAATGGAAAGTGAGGACAGCGAAACTTTCTTAAGACTAAAACGAACTTTACCAGCACTTGATGTGAGTCCATCAGTTCCTATTTTAAAAAGAAAGTTGGCCGAGATCTCTGATGAAGCTACCGTTTCACCTGCAAATAAAAGAAAACGGGTCAGTTTCCACGACCCACCAGTGTCAACTACGGTATCTGTACAAAAGTACATAGAACCAATAGGTCTGAGATCACCACAAAATTCGGCGCAAAAGCGTCAAGAAAGGCAAACACGGCCTCATTCCAATTTCAAGTCCCAAAAGAGACTCGACAGTGCATTCAAGTTAGAAACTGCTTTGTCAAAGGCCGTCGAGAGTTTCACTGATGTTGAAATTCTGAATAGCAGTGATAATACTCAATCAAGTATTGAAACTTCACTAGTAAATGTTACTGTTGATTCAAATAATGATATTCTTAGTGGTATCCAACCACTTAAATCTTTGGACGAGGCACAAACTCCTTTAAAGTCTCAGGATACTACTGAACACTTAAAATCACTCACTGACATGGAGACAGACAGTGACATTATCAGTAAAGACGATACACAAATATCGTCGCTAGAACAGACTCCTGTTGTAGAAGTTGTGAAAATAAGTGACCTGAATGATACAGACCCGATTTGTCCTCAATTAATAAACTGCAGTGATCCCATTGATAATGTTGCGGCGGACCTGTCTTCTGTCACGATGAAATCGTTGCTCATAAAAGAATTGCAGGGTAAAGTTAACACAATCGGTGATTTAGCTAAAATGACTGAATTGGAGGTAAATCGATTATGTATAAAGGCACCAAAAGTGAAAACAGCTAAAAACGCGTTATATCTGTATGCCTTGAGGAATGCTGCGATGAATAAAGCTGCAAATTCTGAGGTTAAAACCGATGTGACTGATGATACGAGAATGATACCGGAAACTGCAAAGATAAATATTGATACACAAACTATTAATGTTTCAATAAATGATGTTGAAATTCAAACATGTGATGTGTCGACATCATCCGTGTCTTTACAAACGGAAAGTGCTACAATGGTAGATACAGGAATACAAACTAAAGAATCTGGGGAAAAATCCACAGCTGATATGGTTACATTCTGCTTGGAAAAGAGATCAGACTTTGTGGATCGGCTTTCGGAACAACTGGACGGATCGTCTGTGCAGAAATTGGCAGAAAAAATGACTATTTATAACATTACCGAAACACTAACCCGGAAAATGACTACGGGAGATACCTATGCAGTATTAAAGAAAATATTAGAGCATTCAACCGAGAAAAATAAAAATACGGAACTATCCATTTTGGGTGACTATTTATATGAGAAATTTGATTCTAAAGATATAATATTGCTTTGTAGCCAGTTGTTACAAAGAGTTCACGATAAGCCAAACTAG
Protein
MPEYDAALLKEVVCRLEDNSLENDKSRRQNYEILVKCLDDEVDVNISVVKKILNICEHDMKQNMKYTAFNLTIILKILERVKAGKLPQTLNFVSTALVILDVINATALLSKIEHIRTLCTETMIQFPDETLVKLAMCYTNKIMEFFEVSKYHKFPLESRILFFQIILKIIKVLPPEKKIEFVNEGLSVWLSKLIPTIVTYLNHDCSVSCMKCIELLELLTNEILRIDYTKDIYWECLYQNISNPSRYPLLMKKLLENGSSLWHRLWIVCIKLLGHQITRNVSGMGTPINSMLPVVEAAFKIDADNRCRAFQCWSVLIDTFAKETNDNCVNKRLKLLVIPLRLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCFGKYNASGKPSFIPGQISDKLSMKCVDAFVEIVGHVGCEGCTDVPRLKERLLKKKYLIEHWHDWSYSLKTAINLLIKKGNEDSQKQMSCIWKSFLLTVGELPDNNIRTDLVNELLNHFENFVEESKSDQKKVELVFNSLVITLFDDETKISQLFNSQTEDDGILHRIISILVDPAFNSFYRHKNTTEMIQKLKPIAYFILEESINSKKLIFLKWVLDKLPSNDNTLKIWTALAELLCESDFNLCSTSLSYMVIWPLKSMNLFNDVKYSAKTWLTLYNTTLAKLKKTELDENISNIILYSNIVTQSSTYMSLCALLAILSNSLTKDAGSKYDQQVELVQVLVNRIDNYEDIEDIFPLLVDIIIGICNHVTESVNETLEEHAMTCVKKIMKLLIPILKQNSAVQNTNQILIGKLLKSVYTVLQTALYPKSHSILYDVLKQYAGCFNDKLILFDAVDSILKLNSTQDKENSPRDMNSDLENCESLKQMNKNEATNKKSCTPNAKEVTKKKKRESSIVNTVVENGEEFVVVKSNWKFNPKKLTENQKEKFTRKREDIPALYQDLSQSQDEFKLTKWKTDSQDTTTNSKSNSKSVNNFDNPEINLKEMPGTDVVPTIIENILGDKKGTTSGIEAELSPKSITTDKKREVPKSRTPRMALKDRIFHNVRNLIEKSITPEKRASTEDKNLENSVKTSTSTDVNIENLVNSAPSLLLSDRPSRVKRKPKKFDDAELFALKKRRHSQTDSQSDDQTVEKPMDNITTDLQMKKSSKITDTVKKNIEENNLSGIVLLIESTGDKYTENTEVAKLTPKVNNIEPSDSIETSDSIQSVTLHEGTKEQDIIEKEKITTKNFVATTEKVDSDNVSTGSQENTSEKRCAKITHVVQVHSTDEITTKSKESSARKSTNKKSRIEKELAIDMVEGHPFLNTPTTSQKRNTRKSLVTPTTNKTSLSEKLNKTKNSGKKDLKEGLKITQLKSTKTPDSQGESSQTDKSQSCSEDVIESSQDSTLTTVSVIKKTPKKIAIVSIEKIYVISKNDANVNRTKSLLKEPDIEIIEFSDEKINSDNNPVTVNESAADKTVESNITNIEPNSSNMMNDSQSIIINETPYSCHESKDDIELPVNKTVIEEKNKTESSDITNTESLAEKEISDDVVIINDDDVPITISSEEKSIQLESQELAEADTQPIEHNDEFNTSSNLNMPCGMEEEKSINQSNETEINTQDDATKTFTESMDVSVVVESTNDVSSPYKNDEQRKKDFLNNTVEISPIKILRPDLEDKSPSPETSRDYVVIKLTSPVHSNGEPFEKGSPEFFTEEKVSPDKRDQSPPRPEVVVNNTSPNSLQSLKKNKPQVRAGGRAAQMLGLCVPDNLNSIMKPDRSDYEESKKNNQSTTPARRNLRILYNSVGGGIETTMESEDSETFLRLKRTLPALDVSPSVPILKRKLAEISDEATVSPANKRKRVSFHDPPVSTTVSVQKYIEPIGLRSPQNSAQKRQERQTRPHSNFKSQKRLDSAFKLETALSKAVESFTDVEILNSSDNTQSSIETSLVNVTVDSNNDILSGIQPLKSLDEAQTPLKSQDTTEHLKSLTDMETDSDIISKDDTQISSLEQTPVVEVVKISDLNDTDPICPQLINCSDPIDNVAADLSSVTMKSLLIKELQGKVNTIGDLAKMTELEVNRLCIKAPKVKTAKNALYLYALRNAAMNKAANSEVKTDVTDDTRMIPETAKINIDTQTINVSINDVEIQTCDVSTSSVSLQTESATMVDTGIQTKESGEKSTADMVTFCLEKRSDFVDRLSEQLDGSSVQKLAEKMTIYNITETLTRKMTTGDTYAVLKKILEHSTEKNKNTELSILGDYLYEKFDSKDIILLCSQLLQRVHDKPN

Summary

Uniprot
H9JB68   A0A3S2TL09   A0A1C9EGN1   A0A194QKY4   A0A194PFX3  
Pubmed
19121390    26354079   
EMBL
BABH01008690    RSAL01000073    RVE49014.1    KX778610    AON96647.1    KQ461198    + More
KPJ06192.1    KQ459606    KPI91599.1   
Proteomes
UP000005204    UP000283053    UP000053240    UP000053268   
PRIDE
H9JB68   
Interpro
IPR016024   ARM-type_fold       
SUPFAM
SSF48371   SSF48371       
ProteinModelPortal
H9JB68   A0A3S2TL09   A0A1C9EGN1   A0A194QKY4   A0A194PFX3  

Ontologies

KEGG
101740154    K11138 telomere-associated protein RIF1 | (RefSeq) telomere-associated protein RIF1-like
GO

Topology

Length:
2261
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.607379999999996
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02927
outside
1  -  2261
 
 

Population Genetic Test Statistics

Pi
252.534848
Theta
199.815096
Tajima's D
0.882862
CLR
0.012572
CSRT
0.631868406579671
Interpretation
Uncertain
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