Gene

KWMTBOMO05594

Pre Gene Modal

BGIBMGA006579

Annotation

PREDICTED:_gamma-aminobutyric_acid_receptor_subunit_delta-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr10(-):5484691-5528219      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.577

CDS

ATGGATCAGCATTCGTACCAAGTTCCAACAGACTACAATAGAAACATTCCACCAGGTAAAAACACTACAGTGTACATAGGCGTCAATATCATCCGAGTTTCTGGGGTCGATGAGAACAAACAGGAGATAACACTAGACGTATTTCTGCAAGTGTCATGGACGGAAGATCGATTGAACGTGCCGCATCGGGTTCCGTTCATCGACCTGCCGTGGGAGTTCAGGCAGCTCATCTGGACGCCGGACCTGTACATCTGGCAGCTACAGACCATGAAGATACTGTCCGTCCTACAGGAGATGGCTTCGCTCAGACTCTACGCTAACCGAACCGTCACAGTCAGTATTGGAGCGACAATAACAATCAAATGCGACATGGACTTCGTGCTGTATCCGTTAGACGTGCAGAACTGTGACATCGACTTCGGTAGCTACAAGTACACAACTGAGGATGTTCGGTTCGAGTGGAGAGAGGTGGCCCGGTGGCTAGGTCTAGGTCCAGTCGGCAACGAGCGGAGCGAGTTCCGCCTCCCAAAATACGTAGTCACTTTCGTCACGGCCAAAAGCGAACATTCCGCGGCGCGAATGCAGATAATACTATCACGAGAACTCAGGAGCTACCTGTTGGAGAGCTACCTGCCGTCCTCGCTGTTCGTCATCATATCCTGGGGCAGCTTCTGCGTCATACCAGAAATCGTCCCGGGACGAATGGTGCTTCTGGTTACGACACTTTTGTCTTTAGTCACCATGTTTGATACTGTCAGTACGAACTCACCTGACGCATTGGAACTGAAATGCATCGAGGTGTGGCTTATATCGTGCACGATATTCGTATTCCTGGCATTACTAGAGTATTTCGTGGTGCTCTTTGGCATCCGGTACGACAAAAGCTGGAGCCGCCGGCGACAGGACCTGCGCAGAGCGGCCTCTGCAGCCCAACTGGGACCGCCGCCGCTACACATCAACCATTTGCAGAGACTAAGCACCCCCGTGACTGGAACGCCCCAGGGAGGGATGTTCTCACCCACTTTGAGCGTTGAAGATGAAGGTCTCAAGCAACAGTTTGAACACCAAGCAATTCAAAGGGATTCACCGATCCTGGAGTCGATACCGCCAGGGGGACGAGCCACTGGCTTCGTGACCAGAATGAGAGGGGTCATCGACAACGGGGTCATGTTCTGCGGAGCCCAGCACGGGGCGCTCGATAAATACGCTCTCATGATCTTCCCCATGTGTTTTCTGCTCTTCAATGTAATTTACTGGACCACGTACTTAAGTTGA

Protein

MDQHSYQVPTDYNRNIPPGKNTTVYIGVNIIRVSGVDENKQEITLDVFLQVSWTEDRLNVPHRVPFIDLPWEFRQLIWTPDLYIWQLQTMKILSVLQEMASLRLYANRTVTVSIGATITIKCDMDFVLYPLDVQNCDIDFGSYKYTTEDVRFEWREVARWLGLGPVGNERSEFRLPKYVVTFVTAKSEHSAARMQIILSRELRSYLLESYLPSSLFVIISWGSFCVIPEIVPGRMVLLVTTLLSLVTMFDTVSTNSPDALELKCIEVWLISCTIFVFLALLEYFVVLFGIRYDKSWSRRRQDLRRAASAAQLGPPPLHINHLQRLSTPVTGTPQGGMFSPTLSVEDEGLKQQFEHQAIQRDSPILESIPPGGRATGFVTRMRGVIDNGVMFCGAQHGALDKYALMIFPMCFLLFNVIYWTTYLS

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.

Uniprot

A0A3S2NTA4   A0A212EVB8   A0A2A4JDD5   A0A194PEB4   A0A1C9EGL6   A0A2A4JBW5   + More
A0A2H1WV50   A0A2A4JDF7   A0A194QKV2   A0A0L7LKU8   H9JAN4   A0A182SSN0   A0A1B6E4Y7   A0A1S4EZ53   J9KA55   U5EWP8   Q17KW1   W5JKR4   A0A1J1ISR8   A0A182GQW3   A0A182NHC3   A0A182XZC1   A0A182I3W1   T1HX37   A0A182RB17   A0A182WIY8   A7UR59   A0A2H8TZS2   A0A336N468   A0A182JTW2   B0XCS9   A0A3Q0JDL6   A0A182IU33   A0A3B4XDB8   A0A2P8Y5Z7   A0A3B4DSN1   W5L6S8   A0A3Q3XH08   A0A3B4URG0   F1QHR2   A0A3Q1HLV1   A0A1A8RZ20   A0A1A8KCX1   A0A1A8MSX2   E9QHL0   A0A1A8DHV1   A0A3B4UPD6   A0A1A8UIQ5   A0A1A8GMV7   A0A3Q2CW37   A0A0F8AUB1   A0A3Q1CEP7   A0A3Q2CWA7   A0A3B4XHX0   A0A3P8SSP4   A0A3Q1BC04   A0A3Q3JF15   A0A3P8SSM0   A0A3B5AKR8   A0A3Q2ZMB1   A0A3Q1F5B9   A0A3B5KTS9   A0A2U9BYL3   G3NPH8   A0A3Q3M4Q0   A0A3Q3M2D4   A0A3B3W092   A0A3B3XIP6   A0A3B5QAX8   A0A0V0VJ07   A0A087X7G8   A0A3P9P291   A0A3B3DQN8   A0A3P8YNP4   A0A1A7WCT2  

Pubmed

22118469    26354079    26227816    19121390    17510324    20920257    + More
23761445    26483478    25244985    12364791    29403074    25329095    23594743    25835551    23542700    29451363    25069045   

EMBL

RSAL01000092    RVE47963.1    AGBW02012210    OWR45448.1    NWSH01002007    PCG69450.1    + More
KQ459606    KPI91607.1    KX778610    AON96640.1    PCG69451.1    ODYU01011300    SOQ56949.1    PCG69452.1    KQ461198    KPJ06198.1    JTDY01000801    KOB75831.1    BABH01008659    BABH01008660    GEDC01014457    GEDC01004320    JAS22841.1    JAS32978.1    ABLF02019202    GANO01002867    JAB57004.1    CH477221    EAT47293.1    ADMH02001258    ETN63364.1    CVRI01000059    CRL03247.1    JXUM01081382    KQ563243    KXJ74218.1    APCN01000225    ACPB03015176    AAAB01008807    EDO64505.1    GFXV01007614    MBW19419.1    UFQT01004460    SSX35697.1    DS232718    EDS45096.1    PYGN01000890    PSN39661.1    CR385042    HAEI01010568    HAEH01022430    SBS10947.1    HAED01000867    HAEE01010240    SBR30290.1    HAEF01018826    HAEG01016159    SBR59985.1    HAEA01004573    SBQ33053.1    HADY01014644    HAEJ01007513    SBS47970.1    HAEB01019523    HAEC01004410    SBQ72487.1    KQ041049    KKF31044.1    CP026253    AWP09344.1    JYDN01000030    KRX63520.1    AYCK01014043    AYCK01014044    HADW01002228    SBP03628.1   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053268    UP000053240    UP000037510    + More
UP000005204    UP000075901    UP000007819    UP000008820    UP000000673    UP000183832    UP000069940    UP000249989    UP000075884    UP000076408    UP000075840    UP000015103    UP000075900    UP000075920    UP000007062    UP000075881    UP000002320    UP000079169    UP000075880    UP000261360    UP000245037    UP000261440    UP000018467    UP000261620    UP000261420    UP000000437    UP000265040    UP000265020    UP000257160    UP000265080    UP000261600    UP000261400    UP000264800    UP000257200    UP000261380    UP000246464    UP000007635    UP000261640    UP000261660    UP000261500    UP000261480    UP000002852    UP000054681    UP000028760    UP000242638    UP000261560    UP000265140   

PRIDE

H9JAN4   

Pfam

PF02932   Neur_chan_memb        + More
PF02931   Neur_chan_LBD
PF00520   Ion_trans
PF00027   cNMP_binding
PF16540   MKLP1_Arf_bdg
PF00225   Kinesin
PF00160   Pro_isomerase

Interpro

IPR006028   GABAA/Glycine_rcpt        + More
IPR006202   Neur_chan_lig-bd       
IPR006029   Neurotrans-gated_channel_TM       
IPR036734   Neur_chan_lig-bd_sf       
IPR036719   Neuro-gated_channel_TM_sf       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR006201   Neur_channel       
IPR014710   RmlC-like_jellyroll       
IPR005821   Ion_trans_dom       
IPR003967   K_chnl_volt-dep_ERG       
IPR018490   cNMP-bd-like       
IPR030172   KCNH6       
IPR000595   cNMP-bd_dom       
IPR003938   K_chnl_volt-dep_EAG/ELK/ERG       
IPR027359   Volt_channel_dom_sf       
IPR038105   Kif23_Arf-bd_sf       
IPR032384   Kif23_Arf-bd       
IPR027417   P-loop_NTPase       
IPR019821   Kinesin_motor_CS       
IPR001752   Kinesin_motor_dom       
IPR036961   Kinesin_motor_dom_sf       
IPR027640   Kinesin-like_fam       
IPR032924   KIF23       
IPR002130   Cyclophilin-type_PPIase_dom       
IPR029000   Cyclophilin-like_dom_sf       
IPR020892   Cyclophilin-type_PPIase_CS       
IPR002289   GABAAb_rcpt       
IPR008098   GABAAd_rcpt       
IPR007110   Ig-like_dom       

SUPFAM

SSF90112   SSF90112        + More
SSF63712   SSF63712       
SSF51206   SSF51206       
SSF52540   SSF52540       
SSF50891   SSF50891       

Gene 3D

2.70.170.10     1.20.120.350     2.60.120.10     3.40.50.12000     3.40.850.10     2.40.100.10    

CDD

cd00038  CAP_ED

ProteinModelPortal

A0A3S2NTA4   A0A212EVB8   A0A2A4JDD5   A0A194PEB4   A0A1C9EGL6   A0A2A4JBW5   + More
A0A2H1WV50   A0A2A4JDF7   A0A194QKV2   A0A0L7LKU8   H9JAN4   A0A182SSN0   A0A1B6E4Y7   A0A1S4EZ53   J9KA55   U5EWP8   Q17KW1   W5JKR4   A0A1J1ISR8   A0A182GQW3   A0A182NHC3   A0A182XZC1   A0A182I3W1   T1HX37   A0A182RB17   A0A182WIY8   A7UR59   A0A2H8TZS2   A0A336N468   A0A182JTW2   B0XCS9   A0A3Q0JDL6   A0A182IU33   A0A3B4XDB8   A0A2P8Y5Z7   A0A3B4DSN1   W5L6S8   A0A3Q3XH08   A0A3B4URG0   F1QHR2   A0A3Q1HLV1   A0A1A8RZ20   A0A1A8KCX1   A0A1A8MSX2   E9QHL0   A0A1A8DHV1   A0A3B4UPD6   A0A1A8UIQ5   A0A1A8GMV7   A0A3Q2CW37   A0A0F8AUB1   A0A3Q1CEP7   A0A3Q2CWA7   A0A3B4XHX0   A0A3P8SSP4   A0A3Q1BC04   A0A3Q3JF15   A0A3P8SSM0   A0A3B5AKR8   A0A3Q2ZMB1   A0A3Q1F5B9   A0A3B5KTS9   A0A2U9BYL3   G3NPH8   A0A3Q3M4Q0   A0A3Q3M2D4   A0A3B3W092   A0A3B3XIP6   A0A3B5QAX8   A0A0V0VJ07   A0A087X7G8   A0A3P9P291   A0A3B3DQN8   A0A3P8YNP4   A0A1A7WCT2  

PDB

6I53     E-value=1.88378e-20,     Score=245

KEGG

101739650    no KO assigned | (RefSeq) gamma-aminobutyric acid receptor subunit delta-like

GO

GO:0006811   GO:0016021   GO:0005886   GO:0005230   GO:0004888   GO:0005249   GO:0034765   GO:0007018   GO:0005524   GO:0003777   GO:0008017   GO:0000915   GO:0005623   GO:0072383   GO:0006457   GO:0003755   GO:0045202   GO:0005887   GO:0043005   GO:0042391   GO:0007165   GO:0005254   GO:0050877   GO:0034220   GO:1902476   GO:0007268   GO:0004890   GO:1902711   GO:0006810   GO:0016020   GO:0001664   GO:0005525   GO:0007264   GO:0003824   GO:0005216  

PANTHER

PTHR18945   PTHR10217:SF468   PTHR24115:SF467   PTHR24115   PTHR18945:SF34  

Length:

424

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

81.1326700000001

Exp number, first 60 AAs:

0.0089

Total prob of N-in:

0.20423

outside

1  -  205

TMhelix

206  -  228

inside

229  -  234

TMhelix

235  -  252

outside

253  -  266

TMhelix

267  -  289

inside

290  -  402

TMhelix

403  -  422

outside

423  -  424

 

 

Pi

165.423502

Theta

18.944215

Tajima's D

0.155044

CLR

0.964432

CSRT

0.420678966051697

Interpretation

Uncertain