Gene

KWMTBOMO05591

Pre Gene Modal

BGIBMGA006580

Annotation

PREDICTED:_S1_RNA-binding_domain-containing_protein_1_[Amyelois_transitella]

Location

Bomo_Chr10(-):5458682-5467739      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.593 Nuclear   Reliability : 2.247

CDS

ATGGAAAAACAAGTAAAGATAACACGAAAACGTAAGTTGGAAGAGAAAGAAGACGCAAAACCGCGAAAAAAACTGGCTAGGACTGTTGAACCAACCAAGTCTAAACCAAGAACAGTCAAAGAAATAAAACTTAAAACTAAGTCACAATCAGTTTCGGCTAAAACTGAAAAAATACTATTACAACCCTCTAGCACGATAAGTGATGAGAAAGCAGACGCCACAGAAGGTTCGGTTGATTTATGGGATGAATCAATTGTTTTGGCGCAGGTTGAGAAAATACCAGAAAAATTGGCAAAAAATTTGGTATCTTTACTATCCGAAGGTTGTACTTTACCTTTCATTGCAAGATACAGGAAAACTGCTGTTGATAATTTGATGCCTGATCGGCTACAAGAATTATATGAAACTTATCAGAATGTTATTCAACTGAAGAAAAAAGCAAAAAGTGTAATAGAAACATTAAAAAAATCAAAGAAGCTCACCCTGGATGTAGAGAAAAGTATCCTAAATGCTCGTAATCTGTCAGAATTAGATTTGGTTTATGCACCTTTGAAATCACATTCCCTATCATTATCAGAAAGAGCTAAAAAACTAGGCTTAGAGCCTCACGCAAGAAATGCTTTAAATGGTAATTACATAGATGTTGAAACACTATGTACAAAGTCAAATGATGAATTGTCAAATGTTGATAAAGTAGAAGCTCACATCACTCACATTGTTGCTGATATCATTCACAAAGATCCAAGAGTATTAGAAAAGATAAGAAGTTTAAAAGAAGAAACCAAATTCACTATTGTAAGCAGCAGAACGAAAAGTTCAATGAAAGAAACAAAAGACAGTGGACAAAGGAAAATTGAATCAAAATCAGACCCCGAGACATACAAAATATATTTCGACTGGAAATGCCCCAGTCATTTTGTTAAATCATATCAGACATTAGCACTGAACCGAGGAGAAGACGAAAAAATACTATCTGTAAAAGTGGTTGTACCTGATTGGTTTTATAACAATCTGGAAAGGTTTTGTATCACGTTATGGAATGGTATATTTTGGATAAAGAAAGGACTAAGTGATGCTTATAGTCGTCTCATCAAGCCCTGGCTGTCAAGACAAGTACGGAGTGAACTCACAGTAGCCGCTCAAAAAGAGGCTATCAAAACTTTTACAACAAACTTAGAAAAGTACCTACTGACTGAACCTATTAAAAATAGACGAATAGCCGGTCTGGATCCAGGCTTTAAAGCTGGATGTAAGGTAGGAATAATAAACCATAATGGTGATAAATTGGAAACCTTTACTTTACATCCTGATTTACGAAGGAAGAACGAAAATGATCCGGCAGCGTCATATCTGAAGAGCCAATTAAAAAACCACATGGTGGAATTAATCGGCCTAGGAAATGGCACCGCGTGTCGTGAAACTGAGACTTGGCTTAAGGAGTATCGCATCAGCGAAGATATTCCAGTTATTATTGTACCCGAACAAGGCGCTTCTATTTATTCAATTAGCAAAGAAGCACAAAAAGAACATCCAAATATGGACCCTAATTTAATATCCGCACTATCCATTGCTAGAAGAGTATTGGATCCACTCGGAGAGCTAATTAAGGTGGAACCGAAGCACCTAGGAGTGGGCATGTACCAACACGATATTCCAACAAAAATGCTAGAAACAGCACTGGATTCTACCGTAGAGCAAATAGTCAGTTTGGTTGGTGTTGACATCAACACTGCATCGCTGGCTATGTTAAGACGAATATCCGGATTAAACGAAAGCAAAGCTAAGAAGATTCTAGACTATCGGCTAAAGAACGAAGGATTCAGTTCAAGAGGGGAGATCCTGAAAGTGACCAGTATAGGAAAAATTACATATCAACAATGCGTTGGTTTTCTAAAAATATTAGGAGGACCGGAACCTCTCGACGCGACAATAATACACCCCGAGAGTTACACTGTTGCGAAATCCTTCGCCAAAAAGATTGGCGTGAACATAAACGAAATGTCTCAGTTAAATTTTCCGGCACTAGTTGAGCAGAAGACATCCTCTATTAACATTGACCGGATCAGTGAAGATCTACAAACTGACGTCGGCACGTTAGAATTGATAATAAGCGCGTTCAAACAGAAGTCGTACGAAGAGAACATTATTCGATTCGTGAAGCCAGTTTATTCTTTATCCGTTCAAGTCAAGGAGCAACTCAAGGAGGGAATGACTCTCACAGGTGTGGTTCGTAACGTCGTTCCCTTCGGTTGTTTTGTCGACTGTGGCGTTGGCGAGAACGGCCTCATACACAAAAGTAAATTGGGGGCTAGTTCTACTCCTAGACTGGGCGACAGGGTAGAAGTCACCGTCATAGCGTTTCCCCAACCCAAACGATTGCAATTTAAACTTGAGAGGATCCTAGACTGA

Protein

MEKQVKITRKRKLEEKEDAKPRKKLARTVEPTKSKPRTVKEIKLKTKSQSVSAKTEKILLQPSSTISDEKADATEGSVDLWDESIVLAQVEKIPEKLAKNLVSLLSEGCTLPFIARYRKTAVDNLMPDRLQELYETYQNVIQLKKKAKSVIETLKKSKKLTLDVEKSILNARNLSELDLVYAPLKSHSLSLSERAKKLGLEPHARNALNGNYIDVETLCTKSNDELSNVDKVEAHITHIVADIIHKDPRVLEKIRSLKEETKFTIVSSRTKSSMKETKDSGQRKIESKSDPETYKIYFDWKCPSHFVKSYQTLALNRGEDEKILSVKVVVPDWFYNNLERFCITLWNGIFWIKKGLSDAYSRLIKPWLSRQVRSELTVAAQKEAIKTFTTNLEKYLLTEPIKNRRIAGLDPGFKAGCKVGIINHNGDKLETFTLHPDLRRKNENDPAASYLKSQLKNHMVELIGLGNGTACRETETWLKEYRISEDIPVIIVPEQGASIYSISKEAQKEHPNMDPNLISALSIARRVLDPLGELIKVEPKHLGVGMYQHDIPTKMLETALDSTVEQIVSLVGVDINTASLAMLRRISGLNESKAKKILDYRLKNEGFSSRGEILKVTSIGKITYQQCVGFLKILGGPEPLDATIIHPESYTVAKSFAKKIGVNINEMSQLNFPALVEQKTSSINIDRISEDLQTDVGTLELIISAFKQKSYEENIIRFVKPVYSLSVQVKEQLKEGMTLTGVVRNVVPFGCFVDCGVGENGLIHKSKLGASSTPRLGDRVEVTVIAFPQPKRLQFKLERILD

Uniprot

H9JAN5   A0A3S2NYQ8   A0A1C9EGM2   A0A194PKI9   A0A194QRN5   A0A212EVC6   + More
A0A2H1WVB6   A0A2A4JQ99   A0A0L7LFQ2   A0A1W4X2L0   A0A1W4X2S3   A0A067RFC8   A0A1Y1LUZ6   A0A1I8NSA0   A0A1I8N2U5   W8CA25   T1P867   C3XRZ1   A0A0K8UTZ2   Q17DE1   A0A0B6YQJ5   D6X0H8   A0A182GQJ7   A0A1S4F716   A0A034WFQ7   A0A0A1X886   A0A026WA20   E2AFW3   A0A0C9QEQ1   A0A0L0BPS7   A0A0C9RFY8   E2BQE5   A0A1S3J3N5   A0A1Q3G1S8   A0A1Q3G1Z7   A0A0Q9WFB5   A0A0M4EN79   B4M174   B4K7P1   A0A0Q9X223   B4NAU9   A0A3Q0RQ31   A0A0J7NQ01   A0A3B5K9P8   V4B9L1   A0A3B3YW77   H2SYA7   A0A087XYL5   R7T5V6   A0A3Q2DDD0   A0A293LJW5   A0A151JQP4   B3M009   A0A3B3TLK4   A0A151X4U9   A0A195FKT1   A0A336MME1   F4WRG0   A0A154PFV8   A0A151IFV0   A0A1J1J1I7   B4PMC4   Q29BD4   A0A1W4VQ00   A0A3P9DRF4   B4GNS8   A0A3P8R3Y9   A0A3Q3ES78   Q9VCX7   M4AR03   I3IX54   A0A1L8G6C0   A0A158NR74   A0A336L9W8   A0A147BMM5   A0A3B3DGA6   A0A1A8LAC0   A0A087T7I4   A0A0L7QQC8   A0A3P9KU39   A0A1A8APR8   A0A3P8RVB0   A0A1A8HZL6   A0A1A8CG21   B4JSI0   A0A3B0JEE5   A0A3Q1CWL3   A0A2P2HVX7   A0A2A3E132   B4R0N1   A0A1A9XFK5   A0A3B4C7C5   A0A2J7PY93   A0A310SAC6   A0A0M8ZSF3   H2Y862   E9IRW8   A0A1B0DKL2   A0A3Q7Q915   A0A2Y9KKM8  

Pubmed

19121390    26354079    22118469    26227816    24845553    28004739    + More
25315136    24495485    18563158    17510324    18362917    19820115    26483478    25348373    25830018    24508170    30249741    20798317    26108605    17994087    21551351    23254933    21719571    17550304    15632085    25186727    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23542700    27762356    21347285    29652888    29451363    17554307    21282665   

EMBL

BABH01008655    BABH01008656    RSAL01000092    RVE47966.1    KX778610    AON96637.1    + More
KQ459606    KPI91610.1    KQ461198    KPJ06201.1    AGBW02012210    OWR45445.1    ODYU01011300    SOQ56947.1    NWSH01000874    PCG73774.1    JTDY01001323    KOB74204.1    KK852722    KDR17710.1    GEZM01046166    JAV77454.1    GAMC01006141    JAC00415.1    KA644861    AFP59490.1    GG666456    EEN69459.1    GDHF01033215    GDHF01030964    GDHF01027331    GDHF01025441    GDHF01024382    GDHF01022177    GDHF01019924    JAI19099.1    JAI21350.1    JAI24983.1    JAI26873.1    JAI27932.1    JAI30137.1    JAI32390.1    CH477296    EAT44396.1    HACG01011618    CEK58483.1    KQ971372    EFA10546.1    JXUM01080875    JXUM01080876    JXUM01080877    JXUM01080878    JXUM01080879    KQ563214    KXJ74278.1    GAKP01006349    JAC52603.1    GBXI01008065    GBXI01006763    GBXI01006121    JAD06227.1    JAD07529.1    JAD08171.1    KK107309    QOIP01000011    EZA52895.1    RLU17281.1    GL439158    EFN67712.1    GBYB01012998    JAG82765.1    JRES01001565    KNC22011.1    GBYB01007255    JAG77022.1    GL449761    EFN82079.1    GFDL01001329    JAV33716.1    GFDL01001276    JAV33769.1    CH940650    KRF83308.1    CP012526    ALC46088.1    EDW67485.1    CH933806    EDW16412.1    KRG02111.1    CH964232    EDW80913.1    LBMM01002652    KMQ94525.1    KB199882    ESP04111.1    AYCK01004310    AYCK01004311    AMQN01003409    KB311733    ELT88700.1    GFWV01003616    MAA28346.1    KQ978660    KYN29381.1    CH902617    EDV44199.1    KQ982540    KYQ55407.1    KQ981522    KYN40604.1    UFQT01001695    SSX31456.1    GL888285    EGI63231.1    KQ434896    KZC10707.1    KQ977771    KYN00022.1    CVRI01000063    CRL04721.1    CM000160    EDW98029.2    CM000070    EAL27064.2    CH479186    EDW38811.1    AE014297    AY061151    AAF56028.3    AAL28699.1    AERX01001585    AERX01001586    AERX01001587    AERX01001588    CM004474    OCT79335.1    ADTU01023814    UFQS01002738    UFQT01002738    SSX14606.1    SSX34003.1    GEGO01003381    JAR92023.1    HAEF01004398    SBR41780.1    KK113795    KFM61073.1    KQ414786    KOC60832.1    HADY01017745    HAEJ01005064    SBP56230.1    HAED01003707    SBQ89701.1    HADZ01013744    SBP77685.1    CH916373    EDV94720.1    OUUW01000005    SPP80754.1    IACF01000102    LAB65912.1    KZ288466    PBC25425.1    CM000364    EDX13954.1    NEVH01020850    PNF21294.1    KQ765605    OAD53888.1    KQ435878    KOX70027.1    GL765283    EFZ16697.1    AJVK01016062   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000218220    + More
UP000037510    UP000192223    UP000027135    UP000095300    UP000095301    UP000001554    UP000008820    UP000007266    UP000069940    UP000249989    UP000053097    UP000279307    UP000000311    UP000037069    UP000008237    UP000085678    UP000008792    UP000092553    UP000009192    UP000007798    UP000261340    UP000036403    UP000005226    UP000030746    UP000261480    UP000028760    UP000014760    UP000265020    UP000078492    UP000007801    UP000261500    UP000075809    UP000078541    UP000007755    UP000076502    UP000078542    UP000183832    UP000002282    UP000001819    UP000192221    UP000265160    UP000008744    UP000265100    UP000264800    UP000000803    UP000002852    UP000005207    UP000186698    UP000005205    UP000261560    UP000054359    UP000053825    UP000265180    UP000265080    UP000001070    UP000268350    UP000257160    UP000242457    UP000000304    UP000092443    UP000261440    UP000235965    UP000053105    UP000007875    UP000092462    UP000286641    UP000248482   

PRIDE

H9JAN5    Q9VCX7   

Pfam

PF09371   Tex_N        + More
PF17674   HHH_9
PF16921   Tex_YqgF
PF00575   S1

Interpro

IPR010994   RuvA_2-like        + More
IPR012337   RNaseH-like_sf       
IPR032639   Tex_YqgF       
IPR023319   Tex-like_HTH_dom_sf       
IPR018974   Tex-like_N       
IPR037027   YqgF/RNaseH-like_dom_sf       
IPR006641   YqgF/RNaseH-like_dom       
IPR041692   HHH_9       
IPR023323   Tex-like_dom_sf       
IPR003029   S1_domain       
IPR022967   S1_dom       
IPR012340   NA-bd_OB-fold       
IPR003583   Hlx-hairpin-Hlx_DNA-bd_motif       

SUPFAM

SSF47781   SSF47781        + More
SSF53098   SSF53098       
SSF50249   SSF50249       

Gene 3D

1.10.10.650     1.10.3500.10     3.30.420.140    

ProteinModelPortal

H9JAN5   A0A3S2NYQ8   A0A1C9EGM2   A0A194PKI9   A0A194QRN5   A0A212EVC6   + More
A0A2H1WVB6   A0A2A4JQ99   A0A0L7LFQ2   A0A1W4X2L0   A0A1W4X2S3   A0A067RFC8   A0A1Y1LUZ6   A0A1I8NSA0   A0A1I8N2U5   W8CA25   T1P867   C3XRZ1   A0A0K8UTZ2   Q17DE1   A0A0B6YQJ5   D6X0H8   A0A182GQJ7   A0A1S4F716   A0A034WFQ7   A0A0A1X886   A0A026WA20   E2AFW3   A0A0C9QEQ1   A0A0L0BPS7   A0A0C9RFY8   E2BQE5   A0A1S3J3N5   A0A1Q3G1S8   A0A1Q3G1Z7   A0A0Q9WFB5   A0A0M4EN79   B4M174   B4K7P1   A0A0Q9X223   B4NAU9   A0A3Q0RQ31   A0A0J7NQ01   A0A3B5K9P8   V4B9L1   A0A3B3YW77   H2SYA7   A0A087XYL5   R7T5V6   A0A3Q2DDD0   A0A293LJW5   A0A151JQP4   B3M009   A0A3B3TLK4   A0A151X4U9   A0A195FKT1   A0A336MME1   F4WRG0   A0A154PFV8   A0A151IFV0   A0A1J1J1I7   B4PMC4   Q29BD4   A0A1W4VQ00   A0A3P9DRF4   B4GNS8   A0A3P8R3Y9   A0A3Q3ES78   Q9VCX7   M4AR03   I3IX54   A0A1L8G6C0   A0A158NR74   A0A336L9W8   A0A147BMM5   A0A3B3DGA6   A0A1A8LAC0   A0A087T7I4   A0A0L7QQC8   A0A3P9KU39   A0A1A8APR8   A0A3P8RVB0   A0A1A8HZL6   A0A1A8CG21   B4JSI0   A0A3B0JEE5   A0A3Q1CWL3   A0A2P2HVX7   A0A2A3E132   B4R0N1   A0A1A9XFK5   A0A3B4C7C5   A0A2J7PY93   A0A310SAC6   A0A0M8ZSF3   H2Y862   E9IRW8   A0A1B0DKL2   A0A3Q7Q915   A0A2Y9KKM8  

PDB

3BZK     E-value=1.71146e-83,     Score=791

KEGG

101738990    no KO assigned | (RefSeq) S1 RNA-binding domain-containing protein 1

GO

GO:0006139   GO:0003676   GO:0003735   GO:0006412   GO:0003729   GO:0003746   GO:0003677   GO:0006281   GO:0004672   GO:0005524   GO:0005515   GO:0007165   GO:0001664   GO:0005525   GO:0007264   GO:0003824  

Length:

802

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02542

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00163

outside

1  -  802

 

 

Pi

231.78745

Theta

161.883456

Tajima's D

0.665762

CLR

0.973788

CSRT

0.568721563921804

Interpretation

Uncertain